Wall clock time and date at job start Tue Mar 31 2020 05:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86803 * 119.99948 * 2 1 4 4 H 1.48501 * 109.47103 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46959 * 299.99919 * 3 2 1 6 6 H 1.48503 * 109.46836 * 59.99812 * 3 2 1 7 7 C 1.38632 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00095 * 180.02562 * 7 2 1 9 9 O 1.34825 * 119.99981 * 0.02562 * 7 2 1 10 10 C 1.35812 * 117.00057 * 185.07264 * 9 7 2 11 11 C 1.39416 * 119.87914 * 174.46734 * 10 9 7 12 12 C 1.37607 * 120.60868 * 179.97438 * 11 10 9 13 13 C 1.39170 * 120.01267 * 0.02562 * 12 11 10 14 14 N 1.37821 * 133.33510 * 179.97438 * 13 12 11 15 15 H 0.96999 * 125.06520 * 0.03759 * 14 13 12 16 16 C 1.36814 * 109.87085 * 179.77356 * 14 13 12 17 17 C 1.34232 * 109.94219 * 0.22815 * 16 14 13 18 18 C 1.50703 * 126.49975 * 180.02562 * 17 16 14 19 19 H 1.09001 * 109.47340 * 144.97325 * 18 17 16 20 20 C 1.50699 * 109.46974 * 264.97931 * 18 17 16 21 21 O 1.20830 * 119.99722 * 120.00061 * 20 18 17 22 22 O 1.34222 * 120.00203 * 299.99442 * 20 18 17 23 23 N 1.46907 * 109.46767 * 24.97659 * 18 17 16 24 24 C 1.48536 * 110.99905 * 57.60336 * 23 18 17 25 25 C 1.54939 * 103.22638 * 159.71933 * 24 23 18 26 26 C 1.54598 * 102.91987 * 322.58615 * 25 24 23 27 27 C 1.47901 * 110.99747 * 174.99913 * 23 18 17 28 28 C 1.40671 * 119.54456 * 0.15399 * 13 12 11 29 29 C 1.38243 * 119.88002 * 354.84693 * 10 9 7 30 30 H 0.97001 * 120.00191 * 359.97438 * 1 2 3 31 31 H 1.07995 * 119.69920 * 0.02562 * 11 10 9 32 32 H 1.07997 * 119.99337 * 180.02562 * 12 11 10 33 33 H 1.07997 * 125.02946 * 180.25142 * 16 14 13 34 34 H 0.96698 * 117.00170 * 180.02562 * 22 20 18 35 35 H 1.08997 * 110.66895 * 278.15686 * 24 23 18 36 36 H 1.08995 * 110.66713 * 41.28754 * 24 23 18 37 37 H 1.08995 * 110.72689 * 204.22685 * 25 24 23 38 38 H 1.08998 * 110.87406 * 81.01244 * 25 24 23 39 39 H 1.08991 * 110.31049 * 263.03902 * 26 25 24 40 40 H 1.09007 * 110.30675 * 140.87303 * 26 25 24 41 41 H 1.08999 * 109.91965 * 333.51059 * 27 23 18 42 42 H 1.09005 * 109.91579 * 94.80516 * 27 23 18 43 43 H 1.07994 * 120.20601 * 359.56981 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3464 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8909 2.3965 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3348 -2.3682 0.0005 10 6 2.0704 -3.5048 0.1081 11 6 1.4304 -4.7373 0.2306 12 6 2.1609 -5.8983 0.3400 13 6 3.5517 -5.8493 0.3295 14 7 4.5328 -6.8131 0.4192 15 1 4.3719 -7.7651 0.5120 16 6 5.7674 -6.2275 0.3520 17 6 5.6371 -4.8976 0.2248 18 6 6.7557 -3.8934 0.1177 19 1 6.4562 -3.0857 -0.5501 20 6 7.0580 -3.3308 1.4827 21 8 8.1597 -3.4644 1.9607 22 8 6.1037 -2.6811 2.1672 23 7 7.9551 -4.5518 -0.4172 24 6 7.6783 -5.1695 -1.7394 25 6 9.0893 -5.3253 -2.3602 26 6 9.8168 -4.0444 -1.8909 27 6 9.0387 -3.5722 -0.6487 28 6 4.2011 -4.6072 0.2098 29 6 3.4511 -3.4347 0.1035 30 1 -0.4850 0.8400 0.0004 31 1 0.3514 -4.7814 0.2389 32 1 1.6548 -6.8477 0.4340 33 1 6.7078 -6.7569 0.3946 34 1 6.3449 -2.3376 3.0384 35 1 7.2021 -6.1423 -1.6174 36 1 7.0601 -4.5112 -2.3496 37 1 9.0305 -5.3588 -3.4481 38 1 9.5872 -6.2149 -1.9747 39 1 9.7834 -3.2833 -2.6702 40 1 10.8497 -4.2713 -1.6266 41 1 8.6142 -2.5847 -0.8298 42 1 9.7023 -3.5413 0.2155 43 1 3.9463 -2.4797 0.0078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040284643.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:20 Heat of formation + Delta-G solvation = -40.107365 kcal Electronic energy + Delta-G solvation = -28637.072915 eV Core-core repulsion = 24648.928863 eV Total energy + Delta-G solvation = -3988.144052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.02179 -39.97700 -38.55826 -38.04226 -35.78750 -34.96589 -33.46539 -32.08994 -30.77515 -29.10208 -28.25579 -27.86872 -26.45488 -25.22926 -22.20719 -22.03952 -21.35252 -21.02704 -20.55554 -19.16248 -18.22589 -17.71369 -17.44091 -16.59759 -16.15583 -15.88822 -15.60072 -15.33162 -15.15589 -14.40435 -14.02931 -13.88281 -13.77183 -13.39187 -13.29448 -13.13910 -12.98944 -12.85327 -12.51047 -12.25090 -11.88713 -11.73241 -11.55812 -11.46455 -11.35557 -11.22340 -11.13463 -11.09676 -10.73058 -10.57842 -10.39077 -10.34214 -10.20749 -9.25440 -8.99755 -8.67149 -8.52882 -7.36439 -6.74758 -6.36548 -3.93494 1.71911 2.37803 2.52232 2.92566 3.16467 3.18509 3.19464 3.23755 3.54196 4.03388 4.04459 4.53208 4.63475 4.65626 4.84180 5.12721 5.14231 5.20402 5.22791 5.28239 5.33795 5.39296 5.46952 5.50582 5.62049 5.68268 5.73142 5.82747 5.91523 5.98445 6.02535 6.12692 6.22501 6.32530 6.47218 6.71948 6.76069 6.81460 6.83815 7.00923 7.16278 7.24848 7.42514 7.52872 7.82951 7.97502 8.09859 8.17358 9.10300 9.82038 10.82106 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.010980 B = 0.004343 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.585442 B = 6444.954887 C = 7832.656517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.037 3.963 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.383 4.383 8 H 0.092 0.908 9 O -0.183 6.183 10 C 0.134 3.866 11 C -0.144 4.144 12 C -0.094 4.094 13 C 0.018 3.982 14 N -0.596 5.596 15 H 0.409 0.591 16 C 0.085 3.915 17 C -0.201 4.201 18 C 0.171 3.829 19 H 0.084 0.916 20 C 0.491 3.509 21 O -0.514 6.514 22 O -0.499 6.499 23 N -0.499 5.499 24 C 0.039 3.961 25 C -0.123 4.123 26 C -0.130 4.130 27 C 0.035 3.965 28 C -0.032 4.032 29 C -0.202 4.202 30 H 0.267 0.733 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.167 0.833 34 H 0.406 0.594 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.091 0.909 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.208 -10.995 -1.838 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.166 4.166 3 Si 0.762 3.238 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.459 4.459 8 H 0.109 0.891 9 O -0.088 6.088 10 C 0.081 3.919 11 C -0.164 4.164 12 C -0.115 4.115 13 C -0.085 4.085 14 N -0.199 5.199 15 H 0.244 0.756 16 C -0.044 4.044 17 C -0.210 4.210 18 C 0.061 3.939 19 H 0.101 0.899 20 C 0.333 3.667 21 O -0.402 6.402 22 O -0.308 6.308 23 N -0.224 5.224 24 C -0.088 4.088 25 C -0.161 4.161 26 C -0.169 4.169 27 C -0.093 4.093 28 C -0.036 4.036 29 C -0.223 4.223 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.130 0.870 33 H 0.184 0.816 34 H 0.264 0.736 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 15.069 -11.451 -1.707 19.003 hybrid contribution 0.319 1.307 0.159 1.355 sum 15.387 -10.144 -1.548 18.495 Atomic orbital electron populations 1.70052 1.05863 1.27270 1.47093 1.25225 0.95776 0.98638 0.96936 0.85711 0.79221 0.80750 0.78149 1.19148 1.20305 1.20246 1.21336 0.91795 0.80836 1.51944 0.89082 1.83987 1.33952 1.11247 1.79570 1.19042 0.89916 0.88051 0.94891 1.20029 0.99422 0.89728 1.07205 1.19533 0.89472 0.97533 1.04960 1.17933 0.90090 0.88074 1.12403 1.41558 1.04417 1.08154 1.65812 0.75564 1.21420 0.88052 0.93061 1.01854 1.19221 0.90915 0.92332 1.18566 1.19328 0.89207 0.95051 0.90296 0.89883 1.23224 0.81630 0.74100 0.87777 1.90653 1.24220 1.55691 1.69618 1.84667 1.44083 1.67284 1.34793 1.64514 1.05019 1.28578 1.24303 1.23275 0.96746 1.00380 0.88365 1.22479 0.95347 0.98259 1.00023 1.22410 0.99776 0.97616 0.97061 1.22952 0.94069 0.93579 0.98657 1.18551 0.90763 0.92254 1.02058 1.20351 0.92718 0.97114 1.12080 0.92289 0.85882 0.86957 0.81556 0.73633 0.89503 0.93063 0.91018 0.90763 0.91553 0.91023 0.94063 0.89028 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.48 13.67 55.48 0.76 -24.72 16 2 C 0.04 1.04 5.49 -17.52 -0.10 0.94 16 3 Si 0.94 20.75 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 7 C -0.38 -10.70 9.48 30.88 0.29 -10.41 16 8 H 0.09 2.40 5.19 -52.49 -0.27 2.13 16 9 O -0.18 -5.19 9.76 -0.13 0.00 -5.19 16 10 C 0.13 3.21 6.65 -39.14 -0.26 2.95 16 11 C -0.14 -2.94 9.95 -39.37 -0.39 -3.33 16 12 C -0.09 -1.62 10.06 -39.47 -0.40 -2.02 16 13 C 0.02 0.31 7.27 -83.91 -0.61 -0.30 16 14 N -0.60 -7.87 6.07 -10.61 -0.06 -7.94 16 15 H 0.41 3.91 8.96 -40.82 -0.37 3.55 16 16 C 0.09 1.14 9.66 -16.74 -0.16 0.98 16 17 C -0.20 -3.20 4.68 -102.70 -0.48 -3.68 16 18 C 0.17 2.57 2.21 -70.01 -0.15 2.41 16 19 H 0.08 1.30 7.96 -51.93 -0.41 0.88 16 20 C 0.49 7.75 7.38 36.01 0.27 8.01 16 21 O -0.51 -8.64 15.47 -18.75 -0.29 -8.93 16 22 O -0.50 -7.62 13.34 -39.24 -0.52 -8.14 16 23 N -0.50 -6.37 4.48 -225.27 -1.01 -7.38 16 24 C 0.04 0.43 5.57 -1.90 -0.01 0.42 16 25 C -0.12 -1.08 7.06 -24.87 -0.18 -1.25 16 26 C -0.13 -1.19 6.93 -25.37 -0.18 -1.37 16 27 C 0.04 0.42 5.56 -2.75 -0.02 0.40 16 28 C -0.03 -0.61 6.35 -105.14 -0.67 -1.28 16 29 C -0.20 -4.47 9.21 -39.07 -0.36 -4.83 16 30 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 32 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.17 1.83 7.61 -52.49 -0.40 1.43 16 34 H 0.41 4.28 9.10 45.56 0.41 4.70 16 35 H 0.09 0.91 6.38 -51.93 -0.33 0.58 16 36 H 0.05 0.61 8.02 -51.93 -0.42 0.19 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 41 H 0.04 0.50 7.65 -51.93 -0.40 0.10 16 42 H 0.09 1.19 7.16 -51.93 -0.37 0.82 16 43 H 0.13 2.90 5.62 -52.49 -0.29 2.60 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -33.84 357.82 -8.68 -42.52 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -4.52 Total: 11.01 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -3.40 Total: -12.35 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: -0.31 Total: -40.03 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.81 Total: -22.26 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.84 -8.68 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040284643.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.410 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds