Wall clock time and date at job start Tue Mar 31 2020 05:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86794 * 119.99680 * 2 1 4 4 H 1.48500 * 109.47601 * 270.00119 * 3 2 1 5 5 H 1.48500 * 109.47132 * 30.00003 * 3 2 1 6 6 H 1.48498 * 109.47142 * 149.99911 * 3 2 1 7 7 C 1.38634 * 120.00350 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99995 * 180.02562 * 7 2 1 9 9 O 1.34817 * 119.99970 * 359.97438 * 7 2 1 10 10 C 1.35809 * 117.00161 * 184.99006 * 9 7 2 11 11 C 1.39420 * 119.87899 * 5.50181 * 10 9 7 12 12 C 1.37601 * 120.60577 * 179.69637 * 11 10 9 13 13 C 1.39171 * 120.02038 * 0.03066 * 12 11 10 14 14 N 1.37817 * 133.33872 * 179.97438 * 13 12 11 15 15 H 0.97001 * 125.06605 * 359.97438 * 14 13 12 16 16 C 1.36817 * 109.87041 * 179.97438 * 14 13 12 17 17 C 1.34230 * 109.94289 * 0.02562 * 16 14 13 18 18 C 1.50696 * 126.49641 * 179.97438 * 17 16 14 19 19 H 1.09001 * 109.47004 * 211.62415 * 18 17 16 20 20 C 1.50699 * 109.47394 * 91.62678 * 18 17 16 21 21 O 1.20827 * 119.99713 * 266.30181 * 20 18 17 22 22 O 1.34226 * 120.00362 * 86.30588 * 20 18 17 23 23 N 1.46904 * 109.47181 * 331.62325 * 18 17 16 24 24 C 1.48530 * 110.99933 * 178.16094 * 23 18 17 25 25 C 1.54936 * 103.22768 * 159.72447 * 24 23 18 26 26 C 1.54593 * 102.91697 * 322.57785 * 25 24 23 27 27 C 1.47905 * 110.99832 * 295.55251 * 23 18 17 28 28 C 1.40669 * 119.54135 * 359.97438 * 13 12 11 29 29 C 1.38236 * 119.88012 * 185.22375 * 10 9 7 30 30 H 0.96992 * 120.00221 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.69699 * 359.72593 * 11 10 9 32 32 H 1.08004 * 119.99199 * 179.97438 * 12 11 10 33 33 H 1.08004 * 125.02374 * 179.97438 * 16 14 13 34 34 H 0.96695 * 117.00064 * 180.02562 * 22 20 18 35 35 H 1.09010 * 110.66386 * 278.15525 * 24 23 18 36 36 H 1.08993 * 110.67562 * 41.27936 * 24 23 18 37 37 H 1.09002 * 110.72208 * 204.22775 * 25 24 23 38 38 H 1.08997 * 110.72705 * 80.93851 * 25 24 23 39 39 H 1.09000 * 110.31216 * 263.04037 * 26 25 24 40 40 H 1.09009 * 110.30718 * 140.87656 * 26 25 24 41 41 H 1.09000 * 109.91805 * 333.51112 * 27 23 18 42 42 H 1.08998 * 109.91624 * 94.80003 * 27 23 18 43 43 H 1.08001 * 120.20986 * 0.25970 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0466 -1.4000 5 1 1.4470 2.6526 0.7000 6 1 3.5472 1.4403 0.7000 7 6 2.0090 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0001 9 8 1.3350 -2.3681 -0.0005 10 6 2.0707 -3.5048 0.1042 11 6 3.4457 -3.4247 0.3205 12 6 4.2046 -4.5668 0.4351 13 6 3.6010 -5.8168 0.3347 14 7 4.0805 -7.1070 0.4042 15 1 5.0086 -7.3496 0.5486 16 6 3.0526 -7.9947 0.2393 17 6 1.8992 -7.3316 0.0609 18 6 0.5386 -7.9421 -0.1557 19 1 -0.0565 -7.2869 -0.7919 20 6 -0.1517 -8.1149 1.1726 21 8 -0.0684 -9.1649 1.7647 22 8 -0.8593 -7.1025 1.6981 23 7 0.6871 -9.2517 -0.8045 24 6 -0.6335 -9.9044 -0.9945 25 6 -0.3574 -10.9455 -2.1082 26 6 0.6310 -10.2039 -3.0372 27 6 1.2653 -9.1099 -2.1584 28 6 2.2140 -5.9018 0.1163 29 6 1.4527 -4.7371 0.0017 30 1 -0.4850 0.8400 -0.0004 31 1 3.9195 -2.4574 0.3992 32 1 5.2691 -4.4932 0.6022 33 1 3.1543 -9.0699 0.2502 34 1 -1.2839 -7.2605 2.5523 35 1 -0.9540 -10.3983 -0.0771 36 1 -1.3778 -9.1787 -1.3220 37 1 -1.2756 -11.1930 -2.6410 38 1 0.1024 -11.8421 -1.6927 39 1 0.0980 -9.7544 -3.8751 40 1 1.3970 -10.8898 -3.3992 41 1 1.0285 -8.1255 -2.5621 42 1 2.3458 -9.2470 -2.1170 43 1 0.3875 -4.7986 -0.1656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040284645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:23 Heat of formation + Delta-G solvation = -42.881868 kcal Electronic energy + Delta-G solvation = -28183.834593 eV Core-core repulsion = 24195.570229 eV Total energy + Delta-G solvation = -3988.264363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.03169 -40.03264 -38.58479 -38.10126 -35.87069 -34.89108 -33.50048 -32.12319 -30.85238 -29.08181 -28.46359 -27.76111 -26.54045 -25.07745 -22.39176 -22.15175 -21.28235 -21.01325 -20.77883 -19.04738 -17.99979 -17.88644 -17.26859 -16.81780 -16.54526 -16.02302 -15.48651 -15.19470 -15.04736 -14.38298 -14.12465 -14.05864 -13.95286 -13.45947 -13.24077 -13.11028 -12.94767 -12.80470 -12.48498 -12.21006 -11.86677 -11.85010 -11.70325 -11.51862 -11.46488 -11.37569 -11.09848 -11.08750 -10.74569 -10.59520 -10.44645 -10.33652 -10.23362 -9.31190 -9.06354 -8.67587 -8.56603 -7.37142 -6.80241 -6.37324 -3.95698 1.70130 2.31425 2.49308 2.85643 3.15661 3.16363 3.20498 3.21085 3.53795 3.98571 4.01983 4.49084 4.60327 4.61929 4.82071 5.08821 5.14210 5.15934 5.16964 5.22083 5.36939 5.39942 5.41393 5.56557 5.59793 5.66259 5.68170 5.78876 5.89106 5.92139 6.02822 6.06055 6.21152 6.30067 6.42259 6.63766 6.70008 6.73259 6.85334 6.98256 7.21395 7.24329 7.30221 7.47180 7.81976 7.96028 8.06071 8.10323 9.08096 9.80499 10.81159 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016359 B = 0.003102 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.179438 B = 9023.322596 C = 9455.286542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.938 3.062 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.391 4.391 8 H 0.089 0.911 9 O -0.181 6.181 10 C 0.142 3.858 11 C -0.188 4.188 12 C -0.090 4.090 13 C 0.019 3.981 14 N -0.597 5.597 15 H 0.409 0.591 16 C 0.098 3.902 17 C -0.204 4.204 18 C 0.175 3.825 19 H 0.080 0.920 20 C 0.490 3.510 21 O -0.508 6.508 22 O -0.507 6.507 23 N -0.497 5.497 24 C 0.025 3.975 25 C -0.119 4.119 26 C -0.132 4.132 27 C 0.042 3.958 28 C -0.037 4.037 29 C -0.169 4.169 30 H 0.268 0.732 31 H 0.134 0.866 32 H 0.109 0.891 33 H 0.169 0.831 34 H 0.407 0.593 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 -18.374 -2.581 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.165 4.165 3 Si 0.763 3.237 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.106 0.894 9 O -0.085 6.085 10 C 0.089 3.911 11 C -0.207 4.207 12 C -0.110 4.110 13 C -0.084 4.084 14 N -0.200 5.200 15 H 0.245 0.755 16 C -0.031 4.031 17 C -0.214 4.214 18 C 0.064 3.936 19 H 0.098 0.902 20 C 0.331 3.669 21 O -0.395 6.395 22 O -0.317 6.317 23 N -0.223 5.223 24 C -0.102 4.102 25 C -0.157 4.157 26 C -0.170 4.170 27 C -0.085 4.085 28 C -0.042 4.042 29 C -0.190 4.190 30 H 0.078 0.922 31 H 0.152 0.848 32 H 0.127 0.873 33 H 0.186 0.814 34 H 0.265 0.735 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.396 -18.665 -2.449 19.129 hybrid contribution 0.206 1.209 0.262 1.254 sum 3.603 -17.457 -2.188 17.958 Atomic orbital electron populations 1.70044 1.05856 1.27416 1.46736 1.25225 0.95802 0.98642 0.96861 0.85761 0.78876 0.80440 0.78609 1.20001 1.20362 1.19332 1.21240 0.91577 0.81035 1.52937 0.89366 1.84024 1.33653 1.11109 1.79719 1.19055 0.89893 0.88000 0.94200 1.21064 0.94188 0.98171 1.07310 1.19675 0.98372 0.89099 1.03887 1.17935 0.93363 0.85013 1.12111 1.41592 1.09215 1.04320 1.64879 0.75495 1.21451 0.86466 0.94916 1.00292 1.19115 0.91912 0.91307 1.19017 1.19286 0.93389 0.90748 0.90132 0.90217 1.23271 0.75114 0.80635 0.87872 1.90660 1.58780 1.28534 1.61538 1.84618 1.62553 1.43987 1.40576 1.64581 1.21086 1.17795 1.18789 1.23384 0.90330 0.96677 0.99832 1.22430 0.99126 0.98308 0.95872 1.22429 0.98888 0.97681 0.97982 1.22838 1.00362 0.98320 0.87014 1.18424 0.91821 0.91261 1.02656 1.19329 0.99279 0.88167 1.12179 0.92181 0.84837 0.87314 0.81367 0.73470 0.89231 0.93651 0.91074 0.90642 0.91385 0.90968 0.92836 0.89968 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.49 29.55 -169.99 -5.02 15.47 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.39 -10.87 9.45 30.88 0.29 -10.58 16 8 H 0.09 2.25 5.26 -52.49 -0.28 1.97 16 9 O -0.18 -5.16 9.75 -0.10 0.00 -5.16 16 10 C 0.14 3.42 6.64 -39.14 -0.26 3.16 16 11 C -0.19 -3.99 9.11 -39.37 -0.36 -4.35 16 12 C -0.09 -1.61 10.06 -39.47 -0.40 -2.01 16 13 C 0.02 0.33 7.27 -83.91 -0.61 -0.28 16 14 N -0.60 -8.07 6.07 -10.61 -0.06 -8.13 16 15 H 0.41 4.07 8.96 -40.82 -0.37 3.71 16 16 C 0.10 1.34 10.50 -16.74 -0.18 1.17 16 17 C -0.20 -3.24 4.76 -102.71 -0.49 -3.73 16 18 C 0.17 2.53 2.18 -70.02 -0.15 2.38 16 19 H 0.08 1.19 7.97 -51.93 -0.41 0.77 16 20 C 0.49 7.41 6.74 36.01 0.24 7.65 16 21 O -0.51 -8.36 16.19 -18.75 -0.30 -8.67 16 22 O -0.51 -7.12 13.42 -39.25 -0.53 -7.65 16 23 N -0.50 -6.09 4.44 -225.28 -1.00 -7.09 16 24 C 0.03 0.28 5.63 -1.90 -0.01 0.26 16 25 C -0.12 -1.02 7.06 -24.87 -0.18 -1.19 16 26 C -0.13 -1.11 6.93 -25.38 -0.18 -1.29 16 27 C 0.04 0.45 5.76 -2.75 -0.02 0.43 16 28 C -0.04 -0.71 6.35 -105.14 -0.67 -1.38 16 29 C -0.17 -3.70 10.04 -39.07 -0.39 -4.09 16 30 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.13 2.80 5.66 -52.49 -0.30 2.50 16 32 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 33 H 0.17 1.91 8.02 -52.48 -0.42 1.49 16 34 H 0.41 3.81 9.10 45.56 0.41 4.22 16 35 H 0.09 1.07 7.11 -51.92 -0.37 0.70 16 36 H 0.05 0.49 8.02 -51.93 -0.42 0.07 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 42 H 0.08 0.85 7.70 -51.93 -0.40 0.45 16 43 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -33.95 360.86 -8.78 -42.73 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -4.61 Total: 10.64 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -3.44 Total: -12.89 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: -0.31 Total: -39.92 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.83 Total: -21.47 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.95 -8.78 -42.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040284645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.149 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds