Wall clock time and date at job start Tue Mar 31 2020 05:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00155 * 2 1 4 4 C 1.53001 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46898 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47063 * 179.97438 * 5 4 3 7 7 C 1.37650 * 125.83632 * 270.01602 * 6 5 4 8 8 S 1.76202 * 125.67663 * 359.97438 * 7 6 5 9 9 C 1.81002 * 99.99904 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47038 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00113 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99875 * 180.02562 * 10 9 8 13 13 C 1.46506 * 120.00006 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47127 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00098 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00001 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99633 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00019 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46777 * 90.00351 * 18 16 14 20 20 H 1.48500 * 109.47060 * 210.00202 * 18 16 14 21 21 H 1.48494 * 109.47312 * 330.00354 * 18 16 14 22 22 N 1.30183 * 108.64460 * 179.97438 * 7 6 5 23 23 N 1.40163 * 108.03452 * 0.02562 * 22 7 6 24 24 H 0.97007 * 126.29720 * 180.02562 * 23 22 7 25 25 C 1.34794 * 125.82669 * 89.97678 * 6 5 4 26 26 O 1.21827 * 126.21333 * 359.77577 * 25 6 5 27 27 H 1.09004 * 109.46973 * 300.00016 * 1 2 3 28 28 H 1.08991 * 109.47000 * 60.00594 * 1 2 3 29 29 H 1.09004 * 109.47280 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47410 * 59.99271 * 3 2 1 31 31 H 1.09007 * 109.46562 * 299.99695 * 3 2 1 32 32 H 1.09002 * 109.47275 * 59.99454 * 4 3 2 33 33 H 1.08999 * 109.46716 * 299.99386 * 4 3 2 34 34 H 1.09002 * 109.47216 * 59.99893 * 5 4 3 35 35 H 1.08995 * 109.47300 * 299.99985 * 5 4 3 36 36 H 1.09006 * 109.46799 * 299.99664 * 9 8 7 37 37 H 1.08997 * 109.47207 * 59.99745 * 9 8 7 38 38 H 0.97000 * 120.00207 * 359.97438 * 12 10 9 39 39 H 1.09000 * 109.47053 * 300.00421 * 13 12 10 40 40 H 1.09000 * 109.46739 * 59.99520 * 13 12 10 41 41 H 0.97004 * 119.99444 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 7 5.6182 2.4666 -0.0013 7 6 6.4216 2.4032 1.1146 8 16 5.8647 2.4482 2.7857 9 6 7.4505 2.3216 3.6490 10 6 7.2151 2.3402 5.1374 11 8 6.0864 2.4307 5.5717 12 7 8.2590 2.2573 5.9858 13 6 8.0302 2.2760 7.4328 14 6 9.3505 2.1705 8.1515 15 1 10.2683 2.0972 7.5870 16 6 9.3869 2.1684 9.5299 17 7 8.2693 2.2581 10.2172 18 14 11.0235 2.0368 10.4208 19 1 11.5697 3.3976 10.6560 20 1 10.8245 1.3514 11.7230 21 1 11.9772 1.2571 9.5916 22 7 7.6613 2.3043 0.7298 23 7 7.6819 2.3027 -0.6716 24 1 8.4695 2.2396 -1.2343 25 6 6.4047 2.4034 -1.0942 26 8 6.0298 2.4282 -2.2531 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8465 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8567 0.6437 -0.8908 33 1 3.8574 0.6436 0.8892 34 1 3.8365 3.1235 0.8887 35 1 3.8358 3.1230 -0.8912 36 1 7.9421 1.3892 3.3709 37 1 8.0841 3.1636 3.3704 38 1 9.1618 2.1853 5.6385 39 1 7.5382 3.2080 7.7108 40 1 7.3969 1.4337 7.7113 41 1 8.2949 2.2563 11.1869 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047822483.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:14 Heat of formation + Delta-G solvation = -47.649450 kcal Electronic energy + Delta-G solvation = -24762.553781 eV Core-core repulsion = 20805.986288 eV Total energy + Delta-G solvation = -3956.567493 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.62723 -38.99177 -38.37262 -37.50473 -35.97498 -34.39914 -32.51931 -32.43281 -31.05639 -29.93614 -27.59658 -26.92080 -25.68512 -23.93888 -22.80460 -22.59605 -21.42617 -20.10135 -19.09394 -17.38793 -17.03661 -16.97247 -16.74082 -16.58997 -16.10788 -15.95728 -15.76171 -15.35927 -15.28349 -15.07888 -14.52006 -14.32383 -13.90034 -13.45431 -13.21324 -12.89624 -12.78750 -12.76909 -12.48943 -12.08558 -12.06843 -11.76819 -11.50191 -11.39817 -11.08621 -10.95507 -10.92464 -10.88090 -10.60764 -10.39570 -10.03632 -9.51754 -9.45087 -9.34079 -8.84529 -8.11887 -7.93503 -6.24446 -4.32037 0.65150 1.41639 1.47134 1.89487 2.38466 3.01420 3.20038 3.20365 3.26642 3.28639 3.50376 3.80546 4.14986 4.28566 4.53512 4.63435 4.67864 4.81830 4.92988 4.97249 5.01794 5.03402 5.08370 5.11199 5.12282 5.31770 5.34112 5.34935 5.63088 5.70182 5.84552 6.42042 6.77611 7.12869 7.13950 7.18544 7.38654 7.53470 7.79919 7.86254 8.38199 8.60468 8.84932 9.34539 10.85574 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.015062 B = 0.002278 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.592575 B =12291.219749 C =13888.172976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.066 3.934 4 C -0.140 4.140 5 C 0.129 3.871 6 N -0.533 5.533 7 C 0.241 3.759 8 S 0.108 5.892 9 C -0.153 4.153 10 C 0.516 3.484 11 O -0.542 6.542 12 N -0.699 5.699 13 C 0.250 3.750 14 C -0.546 4.546 15 H 0.064 0.936 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 N -0.285 5.285 23 N -0.544 5.544 24 H 0.455 0.545 25 C 0.654 3.346 26 O -0.555 6.555 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.395 0.605 39 H 0.031 0.969 40 H 0.031 0.969 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.743 -0.027 -21.173 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.011 4.011 4 C -0.179 4.179 5 C 0.007 3.993 6 N -0.262 5.262 7 C -0.144 4.144 8 S 0.333 5.667 9 C -0.306 4.306 10 C 0.298 3.702 11 O -0.421 6.421 12 N -0.348 5.348 13 C 0.129 3.871 14 C -0.585 4.585 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.521 5.521 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 N -0.116 5.116 23 N -0.296 5.296 24 H 0.304 0.696 25 C 0.351 3.649 26 O -0.429 6.429 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.228 0.772 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.956 -0.085 -20.716 22.984 hybrid contribution 2.190 0.035 -0.691 2.297 sum -7.766 -0.050 -21.407 22.772 Atomic orbital electron populations 1.22763 0.80652 1.02966 1.00109 1.87881 1.19983 1.27586 1.95456 1.22343 0.92769 0.85214 1.00773 1.21891 0.94150 0.96807 1.05052 1.21606 0.73994 0.98197 1.05464 1.45666 1.08491 1.67319 1.04750 1.26739 0.89318 1.00669 0.97679 1.86619 1.07537 1.90450 0.82101 1.23955 0.99691 1.09243 0.97671 1.19399 0.86231 0.78581 0.85960 1.90725 1.22338 1.50945 1.78106 1.46398 1.08068 1.70876 1.09420 1.19217 0.97534 0.98118 0.72204 1.21197 0.92283 1.53270 0.91726 0.91750 1.24950 0.97090 0.94576 0.97338 1.69970 1.26375 1.48438 1.07335 0.86393 0.83001 0.78318 0.79084 1.20418 1.20960 1.19711 1.77523 1.15228 1.27260 0.91552 1.46546 1.08214 1.70658 1.04147 0.69585 1.16740 0.82267 0.81140 0.84785 1.91124 1.77568 1.59204 1.14969 0.93752 0.94049 0.89505 0.92427 0.92904 0.90182 0.89585 0.87984 0.87943 0.85753 0.85766 0.77196 0.95136 0.95121 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.79 10.70 -35.23 -0.38 -4.17 16 3 C 0.07 0.50 5.94 37.16 0.22 0.72 16 4 C -0.14 -1.20 5.91 -26.73 -0.16 -1.36 16 5 C 0.13 1.06 5.82 -4.04 -0.02 1.04 16 6 N -0.53 -5.80 2.75 -121.40 -0.33 -6.13 16 7 C 0.24 2.72 8.02 -88.20 -0.71 2.01 16 8 S 0.11 1.25 20.73 -107.50 -2.23 -0.97 16 9 C -0.15 -1.87 5.67 36.01 0.20 -1.66 16 10 C 0.52 9.00 7.85 -10.99 -0.09 8.92 16 11 O -0.54 -11.52 15.86 5.56 0.09 -11.44 16 12 N -0.70 -13.22 5.55 -61.47 -0.34 -13.56 16 13 C 0.25 6.17 5.43 -5.19 -0.03 6.14 16 14 C -0.55 -14.07 9.28 -34.44 -0.32 -14.39 16 15 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.88 -25.09 13.29 55.43 0.74 -24.36 16 18 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 N -0.29 -3.28 11.98 30.71 0.37 -2.91 16 23 N -0.54 -5.88 7.39 27.70 0.20 -5.67 16 24 H 0.46 3.64 8.96 -182.54 -1.64 2.01 16 25 C 0.65 8.23 8.99 -86.79 -0.78 7.45 16 26 O -0.56 -8.41 17.86 5.07 0.09 -8.32 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.67 7.70 -51.93 -0.40 0.27 16 35 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 36 H 0.12 1.31 8.14 -51.91 -0.42 0.88 16 37 H 0.12 1.29 8.14 -51.92 -0.42 0.87 16 38 H 0.39 6.26 8.32 -40.82 -0.34 5.92 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -33.96 374.86 -8.81 -42.77 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.98 Total: 2.20 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -0.66 Total: 11.81 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.63 Total: -52.64 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.20 Total: -23.92 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.23 Total: -0.97 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.96 -8.81 -42.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047822483.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.881 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds