Wall clock time and date at job start Tue Mar 31 2020 05:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47042 * 2 1 4 4 N 1.46502 * 109.46884 * 180.02562 * 3 2 1 5 5 C 1.37104 * 119.99496 * 264.76231 * 4 3 2 6 6 H 1.08004 * 119.99019 * 138.85806 * 5 4 3 7 7 C 1.38938 * 120.00323 * 318.85739 * 5 4 3 8 8 N 1.31410 * 120.00493 * 341.83213 * 7 5 4 9 9 Si 1.86804 * 120.00214 * 161.83082 * 7 5 4 10 10 H 1.48495 * 109.47220 * 59.99846 * 9 7 5 11 11 H 1.48497 * 109.47548 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46886 * 300.00238 * 9 7 5 13 13 C 1.34774 * 120.00496 * 84.76964 * 4 3 2 14 14 O 1.21284 * 120.00291 * 180.02562 * 13 4 3 15 15 C 1.50700 * 119.99471 * 359.97438 * 13 4 3 16 16 N 1.46503 * 109.46974 * 180.02562 * 15 13 4 17 17 S 1.65603 * 120.00343 * 165.00134 * 16 15 13 18 18 O 1.42098 * 106.40370 * 178.54259 * 17 16 15 19 19 O 1.42108 * 106.39714 * 311.45764 * 17 16 15 20 20 C 1.76190 * 107.21878 * 64.99761 * 17 16 15 21 21 C 1.39871 * 126.04000 * 90.02433 * 20 17 16 22 22 N 1.30840 * 108.20272 * 179.97438 * 21 20 17 23 23 N 1.40090 * 108.20535 * 0.02562 * 22 21 20 24 24 C 1.46496 * 126.03650 * 179.97438 * 23 22 21 25 25 C 1.34943 * 107.92483 * 359.75458 * 23 22 21 26 26 H 1.08998 * 109.47061 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46486 * 299.99960 * 1 2 3 28 28 H 1.09000 * 109.46813 * 60.00081 * 1 2 3 29 29 H 1.08994 * 109.46838 * 239.99922 * 2 1 3 30 30 H 1.09000 * 109.46813 * 119.99919 * 2 1 3 31 31 H 1.08994 * 109.47367 * 60.00247 * 3 2 1 32 32 H 1.09000 * 109.47250 * 299.99651 * 3 2 1 33 33 H 0.97000 * 120.01154 * 179.97438 * 8 7 5 34 34 H 1.08991 * 109.47526 * 60.00606 * 15 13 4 35 35 H 1.08998 * 109.47161 * 299.99695 * 15 13 4 36 36 H 0.97008 * 119.99990 * 345.00138 * 16 15 13 37 37 H 1.07998 * 125.90086 * 0.02562 * 21 20 17 38 38 H 1.08998 * 109.46843 * 89.97420 * 24 23 22 39 39 H 1.08993 * 109.47164 * 209.97536 * 24 23 22 40 40 H 1.09001 * 109.47312 * 329.97609 * 24 23 22 41 41 H 1.07995 * 126.12865 * 180.23684 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1910 1.5507 1.1816 6 1 5.0710 0.9483 1.3522 7 6 3.7540 2.4351 2.1599 8 7 2.9284 3.4078 1.8450 9 14 4.3400 2.2416 3.9231 10 1 5.8196 2.3588 3.9686 11 1 3.7328 3.3028 4.7659 12 1 3.9329 0.9090 4.4365 13 6 4.1785 1.3362 -1.1632 14 8 5.3914 1.3357 -1.1636 15 6 3.4245 1.2169 -2.4625 16 7 4.3761 1.1150 -3.5717 17 16 3.8607 0.6055 -5.0608 18 8 4.9959 0.6476 -5.9144 19 8 3.0977 -0.5728 -4.8397 20 6 2.7369 1.8195 -5.6672 21 6 3.0709 2.9385 -6.4371 22 7 1.9720 3.6007 -6.6938 23 7 0.9025 2.9233 -6.0939 24 6 -0.5053 3.3265 -6.1360 25 6 1.3974 1.8313 -5.4747 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6768 1.9563 -0.8900 33 1 2.6230 4.0252 2.5280 34 1 2.7976 2.0976 -2.6010 35 1 2.7982 0.3251 -2.4385 36 1 5.3081 1.3460 -3.4340 37 1 4.0641 3.2087 -6.7640 38 1 -0.9864 2.8761 -7.0041 39 1 -1.0065 2.9911 -5.2281 40 1 -0.5704 4.4122 -6.2070 41 1 0.8271 1.0991 -4.9225 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048953593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:29 Heat of formation + Delta-G solvation = -26.708553 kcal Electronic energy + Delta-G solvation = -26882.702880 eV Core-core repulsion = 22927.043452 eV Total energy + Delta-G solvation = -3955.659428 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.45568 -38.81705 -36.99011 -35.64712 -35.55776 -34.14731 -33.65782 -32.78710 -31.27692 -30.67341 -27.29961 -27.23549 -25.70973 -24.05407 -22.14433 -21.52151 -21.07892 -19.41839 -19.24341 -18.11140 -17.42653 -16.84349 -15.96718 -15.92929 -15.81293 -15.50316 -15.07089 -14.80476 -14.53657 -14.40649 -13.95563 -13.65660 -13.42810 -13.18718 -13.05903 -12.99307 -12.71862 -12.12291 -11.97221 -11.83572 -11.81434 -11.74522 -11.67722 -11.47963 -11.32493 -11.01899 -10.78607 -10.72567 -10.40561 -10.37899 -10.05778 -9.83745 -9.46022 -9.28464 -8.98192 -8.56174 -7.52100 -6.39887 -4.08771 0.63019 1.35804 2.12525 2.16866 3.16029 3.21989 3.24512 3.33180 3.76568 3.97459 4.06412 4.11243 4.38262 4.59091 4.73441 4.75622 4.87615 4.93045 5.03215 5.28442 5.30056 5.38278 5.46282 5.57728 5.71359 5.76965 5.91011 6.04428 6.16180 6.18232 6.31071 6.39075 6.50348 6.52278 6.83192 7.14025 7.20289 7.34076 7.51945 8.21194 8.41297 9.09190 9.28847 9.88131 10.65174 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.003780 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.312430 B = 7405.565859 C = 8034.402460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.145 4.145 3 C 0.105 3.895 4 N -0.436 5.436 5 C -0.310 4.310 6 H 0.090 0.910 7 C 0.041 3.959 8 N -0.871 5.871 9 Si 0.919 3.081 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.460 3.540 14 O -0.571 6.571 15 C 0.102 3.898 16 N -1.100 6.100 17 S 2.731 3.269 18 O -0.963 6.963 19 O -0.966 6.966 20 C -0.815 4.815 21 C 0.136 3.864 22 N -0.296 5.296 23 N -0.364 5.364 24 C 0.091 3.909 25 C 0.177 3.823 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.047 0.953 33 H 0.269 0.731 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.427 0.573 37 H 0.199 0.801 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.763 -1.340 -11.661 15.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.184 4.184 3 C -0.019 4.019 4 N -0.155 5.155 5 C -0.438 4.438 6 H 0.107 0.893 7 C -0.164 4.164 8 N -0.508 5.508 9 Si 0.746 3.254 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.246 3.754 14 O -0.454 6.454 15 C -0.028 4.028 16 N -0.863 5.863 17 S 2.817 3.183 18 O -0.953 6.953 19 O -0.956 6.956 20 C -0.913 4.913 21 C -0.053 4.053 22 N -0.115 5.115 23 N -0.141 5.141 24 C -0.050 4.050 25 C 0.024 3.976 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.266 0.734 37 H 0.216 0.784 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -10.924 -0.833 -12.595 16.693 hybrid contribution 0.260 0.196 1.390 1.428 sum -10.664 -0.637 -11.204 15.481 Atomic orbital electron populations 1.21679 0.96250 1.00876 1.01456 1.22039 0.95025 0.99135 1.02206 1.21611 0.82170 0.94476 1.03646 1.43390 1.04479 1.63019 1.04629 1.19356 1.12174 1.21636 0.90658 0.89265 1.25418 0.96904 0.93421 1.00617 1.69904 1.33373 1.13356 1.34204 0.86115 0.79384 0.77970 0.81945 1.19665 1.20990 1.19789 1.20143 0.88229 0.82498 0.84571 1.90513 1.13825 1.54871 1.86149 1.21139 0.91662 1.02375 0.87653 1.55180 1.20033 1.86463 1.24673 1.00669 0.72796 0.73004 0.71793 1.93561 1.49494 1.87101 1.65172 1.93557 1.72977 1.43666 1.85405 1.31771 1.09734 1.23668 1.26176 1.23561 0.98377 0.90149 0.93214 1.77433 0.93807 1.20029 1.20207 1.49094 1.08114 1.18080 1.38784 1.22075 0.75327 1.03524 1.04068 1.22535 0.93216 0.89556 0.92324 0.93247 0.92745 0.93247 0.92755 0.91390 0.87533 0.93438 0.92139 0.90310 0.88853 0.73441 0.78438 0.90066 0.88609 0.88648 0.78921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.15 -2.39 6.17 -26.73 -0.16 -2.56 16 3 C 0.11 2.08 4.69 -4.04 -0.02 2.06 16 4 N -0.44 -10.36 2.50 -114.82 -0.29 -10.65 16 5 C -0.31 -8.21 8.84 -14.93 -0.13 -8.34 16 6 H 0.09 2.47 7.82 -52.48 -0.41 2.06 16 7 C 0.04 1.04 4.95 -17.47 -0.09 0.96 16 8 N -0.87 -22.46 11.61 55.49 0.64 -21.81 16 9 Si 0.92 19.92 29.59 -169.99 -5.03 14.89 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 C 0.46 10.58 7.66 -10.99 -0.08 10.49 16 14 O -0.57 -15.04 15.64 5.55 0.09 -14.95 16 15 C 0.10 1.75 5.31 -5.19 -0.03 1.73 16 16 N -1.10 -17.71 5.93 -11.66 -0.07 -17.77 16 17 S 2.73 39.59 5.88 -107.50 -0.63 38.96 16 18 O -0.96 -16.00 17.87 -57.17 -1.02 -17.02 16 19 O -0.97 -15.61 17.31 -57.17 -0.99 -16.60 16 20 C -0.82 -10.32 6.14 -40.01 -0.25 -10.56 16 21 C 0.14 1.73 11.82 -17.36 -0.21 1.52 16 22 N -0.30 -3.84 12.58 30.62 0.39 -3.45 16 23 N -0.36 -3.83 4.01 -68.17 -0.27 -4.10 16 24 C 0.09 0.52 11.47 59.84 0.69 1.21 16 25 C 0.18 1.89 11.23 -17.22 -0.19 1.70 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.85 6.60 -51.93 -0.34 0.51 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.11 2.35 5.76 -51.93 -0.30 2.05 16 32 H 0.05 0.83 6.66 -51.93 -0.35 0.48 16 33 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 34 H 0.08 1.20 7.41 -51.93 -0.38 0.81 16 35 H 0.09 1.44 6.14 -51.93 -0.32 1.12 16 36 H 0.43 7.23 7.70 -34.47 -0.27 6.96 16 37 H 0.20 2.04 8.06 -52.49 -0.42 1.62 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.19 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 361.95 15.07 5.45 5.45 Total: -1.00 -35.71 361.95 -7.14 -42.86 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.31 Total: 7.50 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -0.10 Total: -3.29 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.40 Total: -57.79 kcal Atomic # 8 Polarization: -46.65 SS G_CDS: -1.92 Total: -48.57 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Atomic # 16 Polarization: 39.59 SS G_CDS: -0.63 Total: 38.96 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.71 -7.14 -42.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048953593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.147 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds