Wall clock time and date at job start Tue Mar 31 2020 04:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.46850 * 180.02562 * 8 6 5 10 10 N 1.46506 * 109.46809 * 180.02562 * 9 8 6 11 11 S 1.65598 * 119.99957 * 165.00256 * 10 9 8 12 12 C 1.81396 * 104.44993 * 64.99825 * 11 10 9 13 13 O 1.42100 * 104.27814 * 181.07001 * 11 10 9 14 14 O 1.42104 * 104.27675 * 308.92293 * 11 10 9 15 15 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 16 16 C 1.46491 * 126.04623 * 179.87688 * 15 4 3 17 17 C 1.50702 * 109.46957 * 269.71277 * 16 15 4 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72213 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 27 27 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 28 28 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 29 29 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 30 30 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 31 31 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 32 32 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 33 33 H 1.09005 * 109.47406 * 299.99990 * 9 8 6 34 34 H 1.08990 * 109.47361 * 60.00544 * 9 8 6 35 35 H 0.97001 * 119.99626 * 344.99741 * 10 9 8 36 36 H 1.09001 * 109.47579 * 60.00123 * 12 11 10 37 37 H 1.09000 * 109.46923 * 179.97438 * 12 11 10 38 38 H 1.09003 * 109.47335 * 299.99541 * 12 11 10 39 39 H 1.09004 * 109.47166 * 149.71543 * 16 15 4 40 40 H 1.08994 * 109.47507 * 29.71250 * 16 15 4 41 41 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 6 5.4088 5.2178 0.0307 10 7 6.5975 6.0742 0.0384 11 16 6.4608 7.6836 -0.3269 12 6 5.4461 8.3671 1.0124 13 8 7.7913 8.1757 -0.2453 14 8 5.7459 7.7047 -1.5548 15 7 3.6093 -0.6405 0.0013 16 6 4.7870 -1.5116 0.0026 17 6 5.1921 -1.8109 -1.4178 18 1 4.6288 -1.3935 -2.2393 19 6 6.2856 -2.6124 -1.6685 20 7 6.9718 -3.1203 -0.6681 21 14 6.7923 -2.9770 -3.4290 22 1 7.7551 -1.9451 -3.8909 23 1 7.4328 -4.3153 -3.4927 24 1 5.5920 -2.9606 -4.3032 25 7 2.2731 -1.0608 0.0005 26 1 -0.3634 0.0003 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8901 -0.5136 29 1 1.9901 2.1596 -0.0009 30 1 5.6359 1.1294 0.0155 31 1 6.4297 3.5415 0.9182 32 1 6.4372 3.5481 -0.8617 33 1 4.8172 5.4259 -0.8609 34 1 4.8102 5.4187 0.9191 35 1 7.4645 5.6985 0.2576 36 1 5.9484 8.2077 1.9665 37 1 5.3038 9.4357 0.8513 38 1 4.4767 7.8689 1.0244 39 1 4.5494 -2.4431 0.5166 40 1 5.6079 -1.0120 0.5169 41 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049423884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:54 Heat of formation + Delta-G solvation = -63.851063 kcal Electronic energy + Delta-G solvation = -25624.042494 eV Core-core repulsion = 21666.772446 eV Total energy + Delta-G solvation = -3957.270048 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.39462 -40.62759 -38.13570 -37.00658 -36.68786 -36.20363 -35.56289 -33.82193 -31.77453 -30.65057 -30.21504 -29.50234 -27.80216 -25.24573 -24.58419 -22.46468 -21.22125 -20.86604 -20.25167 -18.89558 -18.67866 -18.20281 -17.89798 -17.30224 -17.02028 -16.84523 -16.63653 -16.10952 -15.83206 -15.59919 -15.14914 -14.93555 -14.51380 -14.40810 -14.03040 -13.96146 -13.91505 -13.57011 -13.37864 -13.31488 -13.16906 -13.12027 -13.04956 -12.90562 -12.72122 -12.69805 -12.56603 -12.30749 -11.91636 -11.90662 -11.67415 -11.42559 -10.89476 -10.75903 -10.38611 -9.61521 -9.03489 -8.36928 -6.54019 -0.62400 0.82801 1.34495 1.35937 1.39271 1.49606 1.67094 1.81988 2.09351 2.25429 2.37624 2.93735 2.94336 3.33052 3.48689 3.81198 3.86153 4.09355 4.14403 4.24809 4.28669 4.52671 4.58546 4.64416 4.74408 4.85176 4.88465 4.91272 4.93499 4.99040 5.00574 5.11805 5.23861 5.26597 5.51077 5.77295 5.98593 6.15570 6.19905 6.31366 6.57712 6.98575 7.07035 7.18376 8.69284 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.011262 B = 0.002918 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.706186 B = 9593.048066 C =11452.269623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.056 3.944 3 C -0.307 4.307 4 C 0.299 3.701 5 N -0.640 5.640 6 C 0.522 3.478 7 O -0.539 6.539 8 C -0.135 4.135 9 C 0.128 3.872 10 N -1.114 6.114 11 S 2.628 3.372 12 C -0.654 4.654 13 O -0.998 6.998 14 O -1.005 7.005 15 N -0.368 5.368 16 C 0.273 3.727 17 C -0.556 4.556 18 H 0.046 0.954 19 C 0.029 3.971 20 N -0.913 5.913 21 Si 0.967 3.033 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.280 1.280 25 N -0.335 5.335 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.172 0.828 30 H 0.423 0.577 31 H 0.141 0.859 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.427 0.573 36 H 0.152 0.848 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.025 0.975 40 H 0.052 0.948 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 20.669 6.569 21.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.109 4.109 3 C -0.339 4.339 4 C 0.076 3.924 5 N -0.288 5.288 6 C 0.310 3.690 7 O -0.415 6.415 8 C -0.176 4.176 9 C 0.001 3.999 10 N -0.875 5.875 11 S 2.724 3.276 12 C -0.807 4.807 13 O -0.989 6.989 14 O -0.995 6.995 15 N -0.154 5.154 16 C 0.154 3.846 17 C -0.594 4.594 18 H 0.064 0.936 19 C -0.172 4.172 20 N -0.551 5.551 21 Si 0.791 3.209 22 H -0.187 1.187 23 H -0.200 1.200 24 H -0.205 1.205 25 N -0.160 5.160 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.189 0.811 30 H 0.261 0.739 31 H 0.159 0.841 32 H 0.140 0.860 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.264 0.736 36 H 0.170 0.830 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.043 0.957 40 H 0.069 0.931 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.307 20.105 5.811 20.969 hybrid contribution 0.939 -0.468 -0.246 1.078 sum -0.368 19.636 5.566 20.413 Atomic orbital electron populations 1.20219 0.84051 1.03807 1.03850 1.22899 0.98707 0.90216 0.99047 1.21506 0.89003 1.00839 1.22529 1.18379 0.89788 0.82778 1.01433 1.43059 1.07488 1.06183 1.72106 1.21322 0.92497 0.80638 0.74497 1.90631 1.28424 1.73808 1.48638 1.21826 0.94560 0.92686 1.08506 1.21038 0.86427 0.88475 1.03992 1.55295 1.16604 1.26762 1.88862 1.04055 0.74209 0.73157 0.76211 1.30337 1.16714 1.14340 1.19351 1.93574 1.37170 1.79812 1.88308 1.93577 1.76194 1.86059 1.43647 1.49162 1.06239 1.03038 1.56942 1.19207 0.78698 0.89035 0.97653 1.21408 1.13448 1.32830 0.91726 0.93593 1.25641 0.95434 0.94308 1.01866 1.69982 1.19360 1.32952 1.32770 0.85422 0.78270 0.78281 0.78925 1.18701 1.20023 1.20540 1.77311 0.86551 1.23756 1.28381 0.89182 0.88792 0.91124 0.81132 0.73930 0.84072 0.85968 0.90800 0.88805 0.73627 0.82968 0.83837 0.83844 0.95671 0.93075 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.66 10.44 71.23 0.74 -0.91 16 2 C 0.06 2.20 7.21 43.07 0.31 2.51 16 3 C -0.31 -11.97 9.58 22.14 0.21 -11.76 16 4 C 0.30 12.10 7.66 131.32 1.01 13.10 16 5 N -0.64 -19.93 5.41 -308.55 -1.67 -21.60 16 6 C 0.52 13.23 7.79 87.66 0.68 13.92 16 7 O -0.54 -16.47 13.11 -3.07 -0.04 -16.51 16 8 C -0.13 -1.89 5.84 29.85 0.17 -1.71 16 9 C 0.13 1.69 5.42 86.38 0.47 2.16 16 10 N -1.11 -11.53 5.89 -187.49 -1.10 -12.63 16 11 S 2.63 34.78 6.10 -56.49 -0.34 34.43 16 12 C -0.65 -3.06 10.89 113.37 1.23 -1.82 16 13 O -1.00 -20.25 18.08 -127.65 -2.31 -22.56 16 14 O -1.00 -23.11 17.50 -127.65 -2.23 -25.34 16 15 N -0.37 -17.24 3.60 -348.73 -1.26 -18.49 16 16 C 0.27 13.71 6.01 85.64 0.51 14.23 16 17 C -0.56 -29.93 9.39 25.60 0.24 -29.69 16 18 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 19 C 0.03 1.54 5.46 84.66 0.46 2.00 16 20 N -0.91 -49.06 13.29 21.45 0.28 -48.77 16 21 Si 0.97 41.66 29.54 68.60 2.03 43.68 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 N -0.33 -15.66 12.56 -47.45 -0.60 -16.26 16 26 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.17 6.27 5.83 -2.91 -0.02 6.26 16 30 H 0.42 11.97 7.96 -92.70 -0.74 11.23 16 31 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.29 7.65 -2.38 -0.02 1.28 16 34 H 0.09 0.92 8.10 -2.39 -0.02 0.90 16 35 H 0.43 2.93 8.62 -96.74 -0.83 2.10 16 36 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.05 2.44 7.49 -2.39 -0.02 2.42 16 41 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16 Total: -1.00 -82.15 367.13 -1.68 -83.83 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -0.49 Total: 18.19 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 6.05 Total: 2.02 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -4.34 Total: -117.75 kcal Atomic # 8 Polarization: -59.82 SS G_CDS: -4.58 Total: -64.40 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: 34.78 SS G_CDS: -0.34 Total: 34.43 kcal Total: -82.15 -1.68 -83.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049423884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.983 kcal (2) G-P(sol) polarization free energy of solvation -82.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds