Wall clock time and date at job start Tue Mar 31 2020 05:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86792 * 120.00127 * 2 1 4 4 H 1.48501 * 109.47377 * 240.00467 * 3 2 1 5 5 H 1.48502 * 109.47174 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47262 * 120.00397 * 3 2 1 7 7 C 1.38953 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99450 * 198.20614 * 7 2 1 9 9 N 1.37090 * 120.00364 * 18.19843 * 7 2 1 10 10 C 1.34782 * 120.00053 * 44.29609 * 9 7 2 11 11 O 1.21292 * 119.99374 * 359.97438 * 10 9 7 12 12 C 1.50691 * 120.00086 * 179.97438 * 10 9 7 13 13 C 1.53007 * 109.47235 * 179.97438 * 12 10 9 14 14 N 1.46495 * 109.47233 * 179.97438 * 13 12 10 15 15 C 1.35084 * 120.51040 * 270.02489 * 14 13 12 16 16 O 1.21295 * 120.13560 * 1.66634 * 15 14 13 17 17 C 1.50753 * 119.73407 * 181.64591 * 15 14 13 18 18 O 1.42998 * 109.63348 * 328.69092 * 17 15 14 19 19 C 1.35984 * 116.71082 * 46.40202 * 18 17 15 20 20 C 1.38394 * 120.67259 * 146.90528 * 19 18 17 21 21 C 1.38317 * 119.87556 * 179.86761 * 20 19 18 22 22 C 1.38276 * 120.25687 * 0.46495 * 21 20 19 23 23 C 1.38290 * 120.19827 * 359.72369 * 22 21 20 24 24 C 1.38498 * 119.81661 * 0.03259 * 23 22 21 25 25 C 1.46505 * 120.00389 * 224.28786 * 9 7 2 26 26 C 1.52996 * 117.49515 * 3.23051 * 25 9 7 27 27 C 1.52996 * 60.00218 * 252.50632 * 26 25 9 28 28 H 0.96994 * 119.99895 * 354.92102 * 1 2 3 29 29 H 1.09000 * 109.47386 * 59.99825 * 12 10 9 30 30 H 1.08995 * 109.47474 * 299.99828 * 12 10 9 31 31 H 1.09006 * 109.46327 * 60.00250 * 13 12 10 32 32 H 1.08995 * 109.47213 * 300.00555 * 13 12 10 33 33 H 1.08999 * 109.44574 * 88.73902 * 17 15 14 34 34 H 1.09005 * 109.44534 * 208.67901 * 17 15 14 35 35 H 1.08005 * 120.06274 * 0.29643 * 20 19 18 36 36 H 1.07997 * 119.87482 * 180.24946 * 21 20 19 37 37 H 1.08008 * 119.90162 * 179.74619 * 22 21 20 38 38 H 1.08006 * 120.08782 * 180.02562 * 23 22 21 39 39 H 1.08997 * 115.55106 * 148.93287 * 25 9 7 40 40 H 1.09005 * 117.50250 * 359.97438 * 26 25 9 41 41 H 1.09005 * 117.49983 * 145.01865 * 26 25 9 42 42 H 1.08994 * 117.50229 * 252.51677 * 27 26 25 43 43 H 1.08995 * 117.51820 * 107.47599 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0483 -1.2269 0.2917 9 7 1.3748 -2.3608 -0.3718 10 6 0.5782 -2.3739 -1.4590 11 8 0.4220 -1.3615 -2.1084 12 6 -0.1182 -3.6463 -1.8674 13 6 -0.9540 -3.3897 -3.1231 14 7 -1.6306 -4.6268 -3.5205 15 6 -1.0355 -5.4911 -4.3712 16 8 0.0797 -5.2629 -4.7900 17 6 -1.7629 -6.7408 -4.7977 18 8 -2.6208 -7.1814 -3.7418 19 6 -3.3907 -6.2333 -3.1439 20 6 -4.6491 -6.5471 -2.6611 21 6 -5.4172 -5.5705 -2.0534 22 6 -4.9364 -4.2794 -1.9348 23 6 -3.6815 -3.9573 -2.4183 24 6 -2.9056 -4.9320 -3.0234 25 6 1.5633 -3.5835 0.4129 26 6 2.4185 -3.4862 1.6778 27 6 2.9643 -4.1979 0.4383 28 1 -0.4850 0.8367 0.0744 29 1 -0.7697 -3.9794 -1.0595 30 1 0.6245 -4.4162 -2.0760 31 1 -0.3027 -3.0565 -3.9312 32 1 -1.6968 -2.6199 -2.9142 33 1 -2.3593 -6.5286 -5.6850 34 1 -1.0382 -7.5225 -5.0258 35 1 -5.0280 -7.5544 -2.7525 36 1 -6.3976 -5.8164 -1.6730 37 1 -5.5427 -3.5203 -1.4628 38 1 -3.3076 -2.9484 -2.3244 39 1 0.7139 -4.2664 0.4306 40 1 2.8413 -2.5127 1.9259 41 1 2.1318 -4.1052 2.5281 42 1 3.0366 -5.2849 0.4729 43 1 3.7457 -3.6926 -0.1293 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:54 Heat of formation + Delta-G solvation = -23.246378 kcal Electronic energy + Delta-G solvation = -28657.804289 eV Core-core repulsion = 24670.391384 eV Total energy + Delta-G solvation = -3987.412905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.58317 -38.97517 -38.58774 -37.69246 -36.27603 -35.61773 -32.91095 -31.46525 -30.81051 -30.59832 -29.84979 -27.74583 -25.47139 -23.95705 -23.30527 -21.97188 -21.64676 -21.10033 -19.57740 -19.17957 -19.04230 -17.37683 -16.98514 -16.53899 -16.07196 -15.61316 -15.39883 -15.02645 -14.82349 -14.67885 -14.49096 -14.21193 -14.10793 -13.91292 -13.53311 -13.28566 -13.08797 -12.68461 -12.34708 -12.15626 -12.09250 -11.53008 -11.43081 -11.27956 -11.07595 -10.92505 -10.86484 -10.76848 -10.44084 -10.37120 -10.19593 -9.96769 -9.91740 -9.73740 -8.78697 -8.71049 -8.09141 -7.85861 -7.03910 -6.12776 -3.87573 0.98070 1.15902 2.28229 2.51667 3.16241 3.29905 3.36525 3.40864 3.60220 3.89631 4.09881 4.27002 4.56099 4.74029 4.76184 4.82708 4.84058 4.95287 5.10240 5.16398 5.26033 5.34283 5.44556 5.47711 5.53166 5.60002 5.69833 5.78127 5.89486 5.96971 6.01609 6.10622 6.23737 6.26182 6.34095 6.38628 6.46037 6.47873 6.55573 6.75779 6.87815 6.93169 7.28965 7.60986 7.73974 8.26033 9.04841 9.12978 9.64821 10.26504 10.96709 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014123 B = 0.003701 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.163038 B = 7563.906658 C = 8037.469701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.349 4.349 8 H 0.077 0.923 9 N -0.426 5.426 10 C 0.490 3.510 11 O -0.536 6.536 12 C -0.145 4.145 13 C 0.128 3.872 14 N -0.548 5.548 15 C 0.482 3.518 16 O -0.504 6.504 17 C 0.052 3.948 18 O -0.305 6.305 19 C 0.070 3.930 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.107 4.107 23 C -0.121 4.121 24 C 0.104 3.896 25 C 0.074 3.926 26 C -0.172 4.172 27 C -0.207 4.207 28 H 0.264 0.736 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.356 -13.794 -3.938 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.136 4.136 3 Si 0.741 3.259 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.475 4.475 8 H 0.094 0.906 9 N -0.146 5.146 10 C 0.277 3.723 11 O -0.414 6.414 12 C -0.186 4.186 13 C 0.007 3.993 14 N -0.272 5.272 15 C 0.270 3.730 16 O -0.378 6.378 17 C -0.026 4.026 18 O -0.219 6.219 19 C 0.024 3.976 20 C -0.130 4.130 21 C -0.137 4.137 22 C -0.126 4.126 23 C -0.141 4.141 24 C 0.009 3.991 25 C -0.032 4.032 26 C -0.210 4.210 27 C -0.246 4.246 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.161 0.839 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.158 0.842 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.897 -13.169 -4.587 17.100 hybrid contribution 0.484 0.911 0.197 1.050 sum -9.413 -12.258 -4.390 16.066 Atomic orbital electron populations 1.69808 1.06549 1.27461 1.43046 1.25220 0.94841 0.99327 0.94169 0.86259 0.79305 0.81849 0.78504 1.19936 1.21178 1.20384 1.18811 0.94482 0.83845 1.50389 0.90578 1.42723 1.43989 1.06786 1.21127 1.19485 0.83108 0.88247 0.81499 1.90529 1.62923 1.34589 1.53369 1.21865 0.99657 0.99576 0.97518 1.21510 0.96768 0.82849 0.98157 1.45945 1.15279 1.22809 1.43207 1.21507 0.87111 0.85253 0.79125 1.90800 1.17966 1.75216 1.53788 1.23191 0.93600 0.95595 0.90185 1.86204 1.53570 1.33301 1.48832 1.18621 0.92244 0.86169 1.00596 1.20478 0.90410 1.00772 1.01308 1.20966 1.00034 0.92684 0.99971 1.21041 0.95181 0.96862 0.99487 1.20923 0.94299 0.99132 0.99761 1.18184 0.86281 0.93669 1.00924 1.21694 0.92595 0.91562 0.97374 1.23058 1.04426 1.02468 0.91037 1.23304 0.99746 0.98514 1.03044 0.92592 0.90562 0.90351 0.88380 0.88648 0.88631 0.83940 0.84653 0.85102 0.85047 0.84211 0.88183 0.87458 0.89814 0.89834 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.35 11.74 55.50 0.65 -23.70 16 2 C 0.07 2.10 4.39 -17.47 -0.08 2.02 16 3 Si 0.91 21.96 29.59 -169.99 -5.03 16.93 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.35 -9.56 7.92 -14.94 -0.12 -9.68 16 8 H 0.08 2.03 7.26 -52.48 -0.38 1.65 16 9 N -0.43 -10.76 2.83 -107.73 -0.31 -11.07 16 10 C 0.49 12.42 6.97 -10.99 -0.08 12.35 16 11 O -0.54 -15.49 13.74 5.55 0.08 -15.41 16 12 C -0.14 -2.90 4.64 -27.88 -0.13 -3.03 16 13 C 0.13 2.35 4.49 -4.04 -0.02 2.33 16 14 N -0.55 -8.61 2.72 -113.22 -0.31 -8.92 16 15 C 0.48 7.34 7.67 -10.82 -0.08 7.26 16 16 O -0.50 -9.29 16.77 5.54 0.09 -9.20 16 17 C 0.05 0.56 7.17 36.03 0.26 0.82 16 18 O -0.30 -3.65 10.45 -19.69 -0.21 -3.86 16 19 C 0.07 0.87 6.44 -39.09 -0.25 0.62 16 20 C -0.11 -1.11 10.00 -39.49 -0.39 -1.51 16 21 C -0.12 -1.08 10.04 -39.54 -0.40 -1.47 16 22 C -0.11 -1.13 10.04 -39.55 -0.40 -1.52 16 23 C -0.12 -1.58 9.36 -39.47 -0.37 -1.95 16 24 C 0.10 1.45 6.39 -83.50 -0.53 0.92 16 25 C 0.07 1.53 5.87 -67.93 -0.40 1.13 16 26 C -0.17 -3.18 9.80 -26.73 -0.26 -3.44 16 27 C -0.21 -3.70 10.36 -26.73 -0.28 -3.98 16 28 H 0.26 7.38 8.32 -40.82 -0.34 7.04 16 29 H 0.08 1.45 7.56 -51.93 -0.39 1.06 16 30 H 0.08 1.55 8.11 -51.93 -0.42 1.13 16 31 H 0.10 1.98 7.45 -51.93 -0.39 1.60 16 32 H 0.10 1.75 5.92 -51.93 -0.31 1.45 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.14 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.14 1.95 6.12 -52.48 -0.32 1.62 16 39 H 0.10 1.89 6.96 -51.93 -0.36 1.52 16 40 H 0.11 2.18 6.72 -51.93 -0.35 1.83 16 41 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -34.21 360.00 -8.57 -42.78 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.44 Total: 6.15 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -3.52 Total: 0.86 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.04 Total: -43.69 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.04 Total: -28.47 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.21 -8.57 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.534 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds