Wall clock time and date at job start Tue Mar 31 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86792 * 120.00127 * 2 1 4 4 H 1.48501 * 109.47377 * 240.00467 * 3 2 1 5 5 H 1.48502 * 109.47174 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47262 * 120.00397 * 3 2 1 7 7 C 1.38953 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99450 * 198.20614 * 7 2 1 9 9 N 1.37090 * 120.00364 * 18.19843 * 7 2 1 10 10 C 1.34782 * 120.00053 * 44.29609 * 9 7 2 11 11 O 1.21292 * 119.99374 * 359.97438 * 10 9 7 12 12 C 1.50691 * 120.00086 * 179.97438 * 10 9 7 13 13 C 1.53007 * 109.47235 * 179.97438 * 12 10 9 14 14 N 1.46495 * 109.47233 * 179.97438 * 13 12 10 15 15 C 1.35084 * 120.51040 * 270.02489 * 14 13 12 16 16 O 1.21295 * 120.13560 * 1.66634 * 15 14 13 17 17 C 1.50753 * 119.73407 * 181.64591 * 15 14 13 18 18 O 1.42998 * 109.63348 * 328.69092 * 17 15 14 19 19 C 1.35984 * 116.71082 * 46.40202 * 18 17 15 20 20 C 1.38394 * 120.67259 * 146.90528 * 19 18 17 21 21 C 1.38317 * 119.87556 * 179.86761 * 20 19 18 22 22 C 1.38276 * 120.25687 * 0.46495 * 21 20 19 23 23 C 1.38290 * 120.19827 * 359.72369 * 22 21 20 24 24 C 1.38498 * 119.81661 * 0.03259 * 23 22 21 25 25 C 1.46505 * 120.00389 * 224.28786 * 9 7 2 26 26 C 1.52996 * 117.49515 * 3.23051 * 25 9 7 27 27 C 1.52996 * 60.00218 * 252.50632 * 26 25 9 28 28 H 0.96994 * 119.99895 * 354.92102 * 1 2 3 29 29 H 1.09000 * 109.47386 * 59.99825 * 12 10 9 30 30 H 1.08995 * 109.47474 * 299.99828 * 12 10 9 31 31 H 1.09006 * 109.46327 * 60.00250 * 13 12 10 32 32 H 1.08995 * 109.47213 * 300.00555 * 13 12 10 33 33 H 1.08999 * 109.44574 * 88.73902 * 17 15 14 34 34 H 1.09005 * 109.44534 * 208.67901 * 17 15 14 35 35 H 1.08005 * 120.06274 * 0.29643 * 20 19 18 36 36 H 1.07997 * 119.87482 * 180.24946 * 21 20 19 37 37 H 1.08008 * 119.90162 * 179.74619 * 22 21 20 38 38 H 1.08006 * 120.08782 * 180.02562 * 23 22 21 39 39 H 1.08997 * 115.55106 * 148.93287 * 25 9 7 40 40 H 1.09005 * 117.50250 * 359.97438 * 26 25 9 41 41 H 1.09005 * 117.49983 * 145.01865 * 26 25 9 42 42 H 1.08994 * 117.50229 * 252.51677 * 27 26 25 43 43 H 1.08995 * 117.51820 * 107.47599 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0483 -1.2269 0.2917 9 7 1.3748 -2.3608 -0.3718 10 6 0.5782 -2.3739 -1.4590 11 8 0.4220 -1.3615 -2.1084 12 6 -0.1182 -3.6463 -1.8674 13 6 -0.9540 -3.3897 -3.1231 14 7 -1.6306 -4.6268 -3.5205 15 6 -1.0355 -5.4911 -4.3712 16 8 0.0797 -5.2629 -4.7900 17 6 -1.7629 -6.7408 -4.7977 18 8 -2.6208 -7.1814 -3.7418 19 6 -3.3907 -6.2333 -3.1439 20 6 -4.6491 -6.5471 -2.6611 21 6 -5.4172 -5.5705 -2.0534 22 6 -4.9364 -4.2794 -1.9348 23 6 -3.6815 -3.9573 -2.4183 24 6 -2.9056 -4.9320 -3.0234 25 6 1.5633 -3.5835 0.4129 26 6 2.4185 -3.4862 1.6778 27 6 2.9643 -4.1979 0.4383 28 1 -0.4850 0.8367 0.0744 29 1 -0.7697 -3.9794 -1.0595 30 1 0.6245 -4.4162 -2.0760 31 1 -0.3027 -3.0565 -3.9312 32 1 -1.6968 -2.6199 -2.9142 33 1 -2.3593 -6.5286 -5.6850 34 1 -1.0382 -7.5225 -5.0258 35 1 -5.0280 -7.5544 -2.7525 36 1 -6.3976 -5.8164 -1.6730 37 1 -5.5427 -3.5203 -1.4628 38 1 -3.3076 -2.9484 -2.3244 39 1 0.7139 -4.2664 0.4306 40 1 2.8413 -2.5127 1.9259 41 1 2.1318 -4.1052 2.5281 42 1 3.0366 -5.2849 0.4729 43 1 3.7457 -3.6926 -0.1293 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058282941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:52 Heat of formation + Delta-G solvation = -44.590980 kcal Electronic energy + Delta-G solvation = -28658.729860 eV Core-core repulsion = 24670.391384 eV Total energy + Delta-G solvation = -3988.338476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.62586 -40.53439 -39.96067 -38.65604 -37.90917 -36.91701 -34.87722 -33.18929 -32.42609 -31.61590 -30.80196 -28.94144 -27.20149 -25.37752 -24.37343 -23.28800 -23.00601 -22.73560 -21.05926 -20.46905 -20.17973 -18.75410 -18.06808 -17.95975 -17.82510 -16.97932 -16.63033 -16.37962 -16.28253 -16.03674 -15.92785 -15.50556 -15.41879 -15.10727 -15.01565 -14.56425 -14.34858 -14.05385 -13.93598 -13.69997 -13.26693 -13.00407 -12.88490 -12.79544 -12.77338 -12.36007 -12.26914 -12.20436 -12.13775 -12.05738 -11.70824 -11.54412 -11.28043 -11.07168 -10.75191 -10.06390 -9.66317 -9.03059 -8.90489 -8.23356 -6.01861 0.05173 0.29291 1.20173 1.33452 1.37392 1.43326 1.46703 2.17815 2.26594 2.35237 2.72759 2.90243 3.03915 3.07951 3.30275 3.61733 3.79787 3.87557 3.90724 4.01862 4.04891 4.06971 4.17396 4.22939 4.25268 4.36820 4.38115 4.45649 4.57686 4.65266 4.71895 4.80684 4.83258 4.98605 5.01996 5.21493 5.26668 5.32026 5.41579 5.46520 5.54656 5.68355 5.87308 6.17046 6.29133 6.57694 6.98853 7.12122 7.63509 8.27425 8.85671 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014123 B = 0.003701 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.163038 B = 7563.906658 C = 8037.469701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.026 3.974 3 Si 0.970 3.030 4 H -0.284 1.284 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.361 4.361 8 H 0.077 0.923 9 N -0.440 5.440 10 C 0.473 3.527 11 O -0.584 6.584 12 C -0.120 4.120 13 C 0.142 3.858 14 N -0.550 5.550 15 C 0.474 3.526 16 O -0.548 6.548 17 C 0.062 3.938 18 O -0.305 6.305 19 C 0.063 3.937 20 C -0.104 4.104 21 C -0.101 4.101 22 C -0.109 4.109 23 C -0.139 4.139 24 C 0.075 3.925 25 C 0.040 3.960 26 C -0.162 4.162 27 C -0.183 4.183 28 H 0.261 0.739 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.169 0.831 35 H 0.165 0.835 36 H 0.170 0.830 37 H 0.150 0.850 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.836 -16.647 -3.007 20.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.181 4.181 3 Si 0.795 3.205 4 H -0.210 1.210 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.488 4.488 8 H 0.094 0.906 9 N -0.160 5.160 10 C 0.262 3.738 11 O -0.466 6.466 12 C -0.162 4.162 13 C 0.019 3.981 14 N -0.275 5.275 15 C 0.264 3.736 16 O -0.425 6.425 17 C -0.015 4.015 18 O -0.220 6.220 19 C 0.016 3.984 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.128 4.128 23 C -0.160 4.160 24 C -0.018 4.018 25 C -0.065 4.065 26 C -0.200 4.200 27 C -0.222 4.222 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.142 0.858 34 H 0.186 0.814 35 H 0.183 0.817 36 H 0.187 0.813 37 H 0.168 0.832 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.103 0.897 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.389 -16.071 -3.608 20.025 hybrid contribution 0.892 1.723 -0.060 1.941 sum -10.497 -14.347 -3.669 18.152 Atomic orbital electron populations 1.69912 1.07875 1.27794 1.44723 1.26025 0.95591 1.02443 0.94055 0.85374 0.78212 0.78172 0.78721 1.21020 1.20958 1.17995 1.19063 0.94763 0.85175 1.49832 0.90584 1.42950 1.43539 1.07832 1.21636 1.20316 0.83068 0.89309 0.81126 1.90480 1.64613 1.36649 1.54856 1.21606 0.99440 0.96747 0.98370 1.21057 0.96090 0.84463 0.96459 1.45874 1.16143 1.21834 1.43619 1.22472 0.86856 0.86181 0.78123 1.90772 1.19977 1.76444 1.55348 1.23377 0.93906 0.93747 0.90495 1.86200 1.53532 1.33027 1.49228 1.18884 0.93158 0.85360 1.00952 1.20905 0.89232 1.02320 0.99846 1.21417 1.01147 0.91439 0.97907 1.21327 0.94145 0.98373 0.98939 1.20933 0.95750 0.98236 1.01059 1.18396 0.85667 0.94953 1.02796 1.22002 0.94891 0.90605 0.99021 1.23109 1.02962 1.02148 0.91742 1.23311 0.96813 1.00399 1.01688 0.92969 0.89470 0.90015 0.91111 0.89483 0.85798 0.81358 0.81705 0.81288 0.83248 0.86451 0.86354 0.89746 0.86273 0.86051 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.57 11.74 21.66 0.25 -52.31 16 2 C 0.03 1.47 4.39 84.93 0.37 1.84 16 3 Si 0.97 46.23 29.59 68.60 2.03 48.26 16 4 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.36 -20.36 7.92 84.04 0.67 -19.70 16 8 H 0.08 4.16 7.26 -2.91 -0.02 4.14 16 9 N -0.44 -22.84 2.83 -613.13 -1.74 -24.58 16 10 C 0.47 25.14 6.97 87.65 0.61 25.75 16 11 O -0.58 -35.83 13.74 -3.07 -0.04 -35.87 16 12 C -0.12 -5.02 4.64 29.85 0.14 -4.88 16 13 C 0.14 5.58 4.49 86.38 0.39 5.97 16 14 N -0.55 -17.82 2.72 -630.31 -1.71 -19.54 16 15 C 0.47 14.53 7.67 87.63 0.67 15.20 16 16 O -0.55 -20.92 16.77 -3.08 -0.05 -20.97 16 17 C 0.06 1.21 7.17 71.25 0.51 1.72 16 18 O -0.31 -6.51 10.45 -93.37 -0.98 -7.49 16 19 C 0.06 1.41 6.44 22.59 0.15 1.56 16 20 C -0.10 -1.69 10.00 22.33 0.22 -1.47 16 21 C -0.10 -1.44 10.04 22.30 0.22 -1.22 16 22 C -0.11 -2.09 10.04 22.29 0.22 -1.87 16 23 C -0.14 -3.68 9.36 22.34 0.21 -3.47 16 24 C 0.08 2.08 6.39 38.14 0.24 2.32 16 25 C 0.04 1.62 5.87 44.99 0.26 1.88 16 26 C -0.16 -5.73 9.80 30.59 0.30 -5.43 16 27 C -0.18 -6.23 10.36 30.59 0.32 -5.91 16 28 H 0.26 15.19 8.32 -92.71 -0.77 14.42 16 29 H 0.09 3.40 7.56 -2.39 -0.02 3.38 16 30 H 0.08 3.32 8.11 -2.39 -0.02 3.30 16 31 H 0.07 3.14 7.45 -2.38 -0.02 3.12 16 32 H 0.09 3.52 5.92 -2.39 -0.01 3.51 16 33 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.17 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 36 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 37 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.12 3.55 6.12 -2.91 -0.02 3.54 16 39 H 0.12 4.32 6.96 -2.39 -0.02 4.30 16 40 H 0.08 3.40 6.72 -2.38 -0.02 3.38 16 41 H 0.12 3.35 8.14 -2.38 -0.02 3.33 16 42 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -79.13 360.00 4.31 -74.82 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 1.04 Total: 25.37 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 5.51 Total: 12.30 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -3.20 Total: -96.43 kcal Atomic # 8 Polarization: -63.25 SS G_CDS: -1.07 Total: -64.32 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -79.13 4.31 -74.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.229 kcal (2) G-P(sol) polarization free energy of solvation -79.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds