Wall clock time and date at job start Tue Mar 31 2020 05:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86799 * 120.00107 * 2 1 4 4 H 1.48496 * 109.47245 * 270.00375 * 3 2 1 5 5 H 1.48505 * 109.47092 * 30.00249 * 3 2 1 6 6 H 1.48502 * 109.47083 * 150.00193 * 3 2 1 7 7 C 1.38717 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00351 * 179.97438 * 7 2 1 9 9 O 1.34785 * 119.99804 * 359.97438 * 7 2 1 10 10 C 1.35579 * 117.00142 * 185.06117 * 9 7 2 11 11 C 1.39178 * 119.89545 * 354.44034 * 10 9 7 12 12 C 1.37594 * 120.10069 * 179.74677 * 11 10 9 13 13 C 1.40026 * 119.89671 * 0.25354 * 12 11 10 14 14 C 1.46960 * 120.10278 * 179.97438 * 13 12 11 15 15 C 1.35019 * 119.99966 * 180.02562 * 14 13 12 16 16 C 1.46260 * 119.99953 * 179.97438 * 15 14 13 17 17 O 1.21723 * 119.99472 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00205 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00008 * 180.02562 * 18 16 15 20 20 C 1.50706 * 109.47254 * 180.02562 * 19 18 16 21 21 O 1.21281 * 119.99546 * 0.02562 * 20 19 18 22 22 N 1.34772 * 120.00292 * 179.97438 * 20 19 18 23 23 C 1.46494 * 120.00006 * 180.02562 * 22 20 19 24 24 C 1.53001 * 117.49738 * 223.74289 * 23 22 20 25 25 C 1.53009 * 117.49661 * 155.08659 * 23 22 20 26 26 C 1.40025 * 119.79855 * 0.02562 * 13 12 11 27 27 C 1.37597 * 119.89768 * 359.97438 * 26 13 12 28 28 H 0.97001 * 119.99987 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.94725 * 0.02806 * 11 10 9 30 30 H 1.07997 * 120.05580 * 180.27952 * 12 11 10 31 31 H 1.08003 * 119.99691 * 0.02562 * 14 13 12 32 32 H 1.07994 * 120.00600 * 0.02562 * 15 14 13 33 33 H 0.97000 * 120.00455 * 0.02562 * 18 16 15 34 34 H 1.09004 * 109.46853 * 299.99796 * 19 18 16 35 35 H 1.08997 * 109.47106 * 60.00303 * 19 18 16 36 36 H 0.97004 * 119.99746 * 359.97438 * 22 20 19 37 37 H 1.09000 * 115.55351 * 9.42143 * 23 22 20 38 38 H 1.09002 * 117.50113 * 0.02562 * 24 23 22 39 39 H 1.09002 * 117.49531 * 145.01936 * 24 23 22 40 40 H 1.08998 * 117.49343 * 214.97705 * 25 23 22 41 41 H 1.08998 * 117.49964 * 359.97438 * 25 23 22 42 42 H 1.08000 * 120.05154 * 179.97438 * 26 13 12 43 43 H 1.08004 * 119.94803 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0087 -1.2013 -0.0005 8 1 3.0887 -1.2013 -0.0010 9 8 1.3348 -2.3686 -0.0005 10 6 2.0691 -3.5033 0.1055 11 6 3.4591 -3.4339 0.0912 12 6 4.2085 -4.5823 0.2037 13 6 3.5707 -5.8227 0.3275 14 6 4.3667 -7.0522 0.4474 15 6 3.7494 -8.2472 0.5662 16 6 4.5417 -9.4709 0.6850 17 8 5.7575 -9.4118 0.6773 18 7 3.9256 -10.6636 0.8040 19 6 4.7192 -11.8892 0.9236 20 6 3.7970 -13.0753 1.0419 21 8 2.5953 -12.9128 1.0273 22 7 4.3077 -14.3166 1.1629 23 6 3.4113 -15.4695 1.2774 24 6 3.7558 -16.5312 2.3239 25 6 3.9516 -16.8312 0.8357 26 6 2.1720 -5.8881 0.3356 27 6 1.4307 -4.7344 0.2225 28 1 -0.4850 0.8401 0.0004 29 1 3.9502 -2.4767 -0.0039 30 1 5.2871 -4.5272 0.1970 31 1 5.4454 -6.9999 0.4406 32 1 2.6708 -8.2996 0.5726 33 1 2.9568 -10.7106 0.8105 34 1 5.3462 -12.0038 0.0393 35 1 5.3496 -11.8288 1.8107 36 1 5.2690 -14.4467 1.1735 37 1 2.3560 -15.2644 1.0970 38 1 4.6493 -16.3715 2.9275 39 1 2.9272 -17.0245 2.8319 40 1 3.2518 -17.5218 0.3653 41 1 4.9740 -16.8690 0.4596 42 1 1.6757 -6.8427 0.4304 43 1 0.3518 -4.7840 0.2282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066067277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:13 Heat of formation + Delta-G solvation = -31.908043 kcal Electronic energy + Delta-G solvation = -25188.107612 eV Core-core repulsion = 21200.319110 eV Total energy + Delta-G solvation = -3987.788503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.55215 -39.41303 -39.06433 -37.62642 -36.87718 -34.51928 -33.45077 -33.19382 -32.29076 -30.41791 -29.08373 -27.55374 -25.64192 -23.48018 -22.97596 -22.41886 -22.07399 -21.20167 -20.73998 -19.54666 -18.33643 -17.63707 -17.31225 -17.05627 -16.56978 -16.16281 -15.90126 -15.02110 -14.97387 -14.75346 -14.62229 -14.38371 -14.19116 -13.81844 -13.62896 -13.30938 -13.26691 -13.01713 -12.98020 -12.57413 -12.18135 -11.93212 -11.92752 -11.75417 -11.70956 -11.12235 -11.11600 -11.07274 -10.67281 -10.53134 -10.46936 -9.90158 -9.61115 -9.48601 -9.39623 -9.24032 -8.84767 -8.36685 -7.10494 -6.64278 -4.19123 1.06535 1.99612 2.15272 2.32180 2.55022 3.04444 3.05412 3.10313 3.27082 3.32833 3.55419 3.83023 4.09944 4.18181 4.35558 4.40857 4.52245 4.88956 4.93489 4.96084 5.04986 5.06113 5.12773 5.20295 5.29076 5.34397 5.48649 5.54773 5.64062 5.68774 5.89093 6.02796 6.12906 6.18563 6.46448 6.48976 6.62649 6.80497 6.85110 6.92951 7.14307 7.24881 7.29142 7.50030 7.60277 7.65353 7.81043 8.26745 8.80476 9.47568 10.52344 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.040635 B = 0.001480 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.900936 B =18918.790179 C =19511.963244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.393 4.393 8 H 0.097 0.903 9 O -0.162 6.162 10 C 0.167 3.833 11 C -0.243 4.243 12 C -0.034 4.034 13 C -0.200 4.200 14 C 0.041 3.959 15 C -0.282 4.282 16 C 0.560 3.440 17 O -0.561 6.561 18 N -0.723 5.723 19 C 0.104 3.896 20 C 0.515 3.485 21 O -0.531 6.531 22 N -0.701 5.701 23 C 0.078 3.922 24 C -0.192 4.192 25 C -0.188 4.188 26 C -0.042 4.042 27 C -0.199 4.199 28 H 0.274 0.726 29 H 0.131 0.869 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.412 0.588 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.405 0.595 37 H 0.140 0.860 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.119 0.881 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.936 -26.995 2.390 28.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.469 4.469 8 H 0.115 0.885 9 O -0.063 6.063 10 C 0.111 3.889 11 C -0.262 4.262 12 C -0.053 4.053 13 C -0.201 4.201 14 C 0.021 3.979 15 C -0.303 4.303 16 C 0.353 3.647 17 O -0.442 6.442 18 N -0.379 5.379 19 C -0.024 4.024 20 C 0.301 3.699 21 O -0.406 6.406 22 N -0.351 5.351 23 C -0.028 4.028 24 C -0.231 4.231 25 C -0.226 4.226 26 C -0.061 4.061 27 C -0.218 4.218 28 H 0.084 0.916 29 H 0.149 0.851 30 H 0.132 0.868 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.250 0.750 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.240 0.760 37 H 0.157 0.843 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.117 0.883 42 H 0.137 0.863 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.439 -26.567 2.349 27.974 hybrid contribution 0.507 0.532 0.034 0.735 sum 8.946 -26.035 2.383 27.632 Atomic orbital electron populations 1.70011 1.06149 1.28255 1.44018 1.25389 0.95892 0.99137 0.96010 0.85650 0.79013 0.79543 0.78936 1.19639 1.20046 1.18944 1.21480 0.92110 0.80572 1.52732 0.88531 1.83906 1.34973 1.11803 1.75646 1.19623 0.90338 0.87872 0.91106 1.21096 0.93630 0.99139 1.12308 1.20983 0.98576 0.91374 0.94334 1.18460 0.92990 0.92304 1.16356 1.22280 0.99180 0.90943 0.85467 1.22367 0.99884 0.91557 1.16516 1.18402 0.87602 0.83514 0.75190 1.90775 1.14191 1.87363 1.51824 1.45591 1.11136 1.04749 1.76409 1.20952 0.93552 0.83256 1.04639 1.20669 0.89483 0.84298 0.75445 1.90720 1.15494 1.85180 1.49246 1.45271 1.09959 1.05377 1.74514 1.21642 0.95961 0.81386 1.03836 1.23457 1.04250 1.03009 0.92382 1.23407 1.03119 0.98456 0.97660 1.20906 0.92664 0.96969 0.95513 1.20155 0.99804 0.90130 1.11760 0.91599 0.85121 0.86798 0.85875 0.85690 0.75001 0.88358 0.88362 0.75987 0.84283 0.88346 0.87820 0.87703 0.88309 0.86313 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.90 13.67 55.48 0.76 -23.14 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 19.56 29.55 -169.99 -5.02 14.53 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.39 -10.49 9.48 30.91 0.29 -10.19 16 8 H 0.10 2.36 5.18 -52.48 -0.27 2.09 16 9 O -0.16 -4.43 9.74 0.70 0.01 -4.43 16 10 C 0.17 3.86 6.66 -38.89 -0.26 3.61 16 11 C -0.24 -5.03 9.14 -39.47 -0.36 -5.39 16 12 C -0.03 -0.61 9.78 -39.15 -0.38 -0.99 16 13 C -0.20 -3.43 5.87 -105.03 -0.62 -4.05 16 14 C 0.04 0.63 9.45 -37.19 -0.35 0.27 16 15 C -0.28 -3.93 9.41 -37.50 -0.35 -4.28 16 16 C 0.56 7.83 7.74 -13.04 -0.10 7.73 16 17 O -0.56 -9.34 16.23 5.17 0.08 -9.25 16 18 N -0.72 -8.08 5.52 -62.93 -0.35 -8.42 16 19 C 0.10 0.88 6.15 -5.19 -0.03 0.85 16 20 C 0.51 4.42 7.90 -10.98 -0.09 4.33 16 21 O -0.53 -6.44 15.23 5.56 0.08 -6.35 16 22 N -0.70 -4.00 5.57 -53.80 -0.30 -4.30 16 23 C 0.08 0.45 6.43 -67.93 -0.44 0.01 16 24 C -0.19 -0.80 10.46 -26.69 -0.28 -1.07 16 25 C -0.19 -0.71 10.46 -26.69 -0.28 -0.98 16 26 C -0.04 -0.73 9.40 -39.15 -0.37 -1.10 16 27 C -0.20 -4.03 9.97 -39.47 -0.39 -4.42 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.13 2.68 5.62 -52.49 -0.29 2.38 16 30 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.12 1.83 7.52 -52.48 -0.39 1.43 16 32 H 0.13 1.55 6.06 -52.49 -0.32 1.23 16 33 H 0.41 4.42 7.42 -40.82 -0.30 4.12 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.41 1.18 8.83 -40.82 -0.36 0.82 16 37 H 0.14 1.02 7.40 -51.93 -0.38 0.63 16 38 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.12 1.70 6.16 -52.49 -0.32 1.38 16 43 H 0.12 2.34 8.06 -52.48 -0.42 1.91 16 LS Contribution 378.10 15.07 5.70 5.70 Total: -1.00 -32.90 378.10 -8.31 -41.21 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.17 Total: 9.14 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -4.10 Total: -14.69 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.11 Total: -35.87 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.18 Total: -20.03 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.90 -8.31 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066067277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.303 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds