Wall clock time and date at job start Tue Mar 31 2020 05:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99883 * 2 1 4 4 H 1.48501 * 109.47282 * 240.00192 * 3 2 1 5 5 H 1.48503 * 109.47218 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47062 * 120.00056 * 3 2 1 7 7 C 1.37878 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99656 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99857 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.46663 * 180.02562 * 9 7 2 11 11 C 1.46503 * 119.99673 * 269.99506 * 10 9 7 12 12 C 1.52991 * 109.47182 * 270.00310 * 11 10 9 13 13 C 1.53002 * 117.49840 * 243.75031 * 12 11 10 14 14 C 1.53003 * 117.49831 * 175.08979 * 12 11 10 15 15 C 1.34775 * 119.99870 * 90.00017 * 10 9 7 16 16 O 1.21693 * 120.00033 * 359.97438 * 15 10 9 17 17 C 1.46425 * 119.99859 * 179.97438 * 15 10 9 18 18 C 1.34806 * 120.00309 * 179.97438 * 17 15 10 19 19 C 1.47207 * 120.00281 * 180.02562 * 18 17 15 20 20 C 1.39851 * 120.16992 * 15.73984 * 19 18 17 21 21 C 1.37868 * 119.82878 * 179.97438 * 20 19 18 22 22 C 1.38420 * 120.17179 * 0.02562 * 21 20 19 23 23 C 1.38388 * 120.34094 * 359.70127 * 22 21 20 24 24 C 1.37910 * 120.17208 * 0.55949 * 23 22 21 25 25 N 1.48018 * 120.08868 * 179.74742 * 24 23 22 26 26 O 1.21803 * 120.00160 * 37.26876 * 25 24 23 27 27 O 1.21796 * 120.00177 * 216.99725 * 25 24 23 28 28 H 0.97002 * 120.00163 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.46969 * 60.00150 * 9 7 2 30 30 H 1.08999 * 109.46962 * 300.00379 * 9 7 2 31 31 H 1.08995 * 109.47082 * 30.00712 * 11 10 9 32 32 H 1.08998 * 109.46377 * 150.00328 * 11 10 9 33 33 H 1.08997 * 115.55344 * 29.42012 * 12 11 10 34 34 H 1.09000 * 117.49953 * 0.02562 * 13 12 11 35 35 H 1.08996 * 117.49966 * 145.02572 * 13 12 11 36 36 H 1.08998 * 117.50197 * 214.97815 * 14 12 11 37 37 H 1.08995 * 117.49567 * 0.02562 * 14 12 11 38 38 H 1.08009 * 119.99853 * 0.02562 * 17 15 10 39 39 H 1.08009 * 119.99838 * 0.02562 * 18 17 15 40 40 H 1.08001 * 120.08595 * 359.97438 * 20 19 18 41 41 H 1.07999 * 119.91493 * 179.97438 * 21 20 19 42 42 H 1.08000 * 119.82920 * 179.97438 * 22 21 20 43 43 H 1.07999 * 119.91258 * 180.29919 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6790 -4.1694 -1.2693 12 6 1.7484 -5.3006 -1.7109 13 6 2.3396 -6.7091 -1.7964 14 6 2.0100 -5.9380 -3.0770 15 6 2.6410 -4.1248 1.1667 16 8 2.2459 -3.6620 2.2205 17 6 3.5922 -5.2381 1.1667 18 6 4.0306 -5.7501 2.3341 19 6 4.9873 -6.8689 2.3341 20 6 5.6929 -7.1903 1.1702 21 6 6.5876 -8.2392 1.1782 22 6 6.7879 -8.9739 2.3341 23 6 6.0976 -8.6585 3.4913 24 6 5.1953 -7.6155 3.4978 25 7 4.4539 -7.2833 4.7350 26 8 5.0058 -7.3692 5.8174 27 8 3.2934 -6.9194 4.6704 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8896 31 1 2.6868 -3.3878 -2.0289 32 1 3.6885 -4.5594 -1.1389 33 1 0.7111 -5.2089 -1.3887 34 1 3.3915 -6.8300 -1.5376 35 1 1.6912 -7.5441 -1.5309 36 1 1.1449 -6.2660 -3.6534 37 1 2.8454 -5.5517 -3.6609 38 1 3.9431 -5.6485 0.2313 39 1 3.6800 -5.3394 3.2695 40 1 5.5375 -6.6182 0.2674 41 1 7.1330 -8.4889 0.2801 42 1 7.4898 -9.7948 2.3341 43 1 6.2628 -9.2333 4.3906 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069366733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:06 Heat of formation + Delta-G solvation = 38.467255 kcal Electronic energy + Delta-G solvation = -27616.740000 eV Core-core repulsion = 23632.003199 eV Total energy + Delta-G solvation = -3984.736801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.27690 -39.86686 -39.19029 -37.27924 -36.61398 -34.72651 -34.18262 -32.56626 -32.36250 -30.31121 -27.97764 -26.78524 -26.21773 -24.69338 -23.17155 -22.51203 -22.35480 -20.99636 -20.53748 -19.32057 -18.69769 -18.31244 -17.67709 -17.21304 -16.48818 -16.39461 -15.68862 -15.35657 -14.99261 -14.96045 -14.64206 -14.29519 -14.05223 -13.82201 -13.51124 -13.07410 -12.91146 -12.53169 -12.24366 -11.98769 -11.88267 -11.61495 -11.53139 -11.49671 -11.22526 -11.17599 -11.03534 -10.90260 -10.64195 -10.58186 -10.39504 -10.14126 -9.97844 -9.92303 -9.66355 -9.08088 -8.80115 -8.44083 -7.73262 -6.05285 -4.10426 -0.35719 0.25279 0.96503 1.26737 1.72338 2.97807 3.31163 3.36317 3.38871 3.63155 3.84755 3.86651 3.98735 4.11124 4.24530 4.44169 4.47951 4.52897 4.72450 4.80892 4.93992 4.94822 5.00689 5.18031 5.25875 5.29142 5.39038 5.45758 5.47905 5.59736 5.65098 5.75250 5.89228 5.91135 5.99852 6.09502 6.11843 6.26352 6.32523 6.39015 7.03529 7.41736 7.48360 7.54392 7.90322 8.20668 8.32359 8.85594 9.00913 9.54520 11.02791 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.003389 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.488938 B = 8261.258500 C = 9641.023734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.246 3.754 10 N -0.585 5.585 11 C 0.141 3.859 12 C -0.165 4.165 13 C -0.185 4.185 14 C -0.175 4.175 15 C 0.530 3.470 16 O -0.529 6.529 17 C -0.141 4.141 18 C -0.089 4.089 19 C 0.014 3.986 20 C -0.110 4.110 21 C -0.070 4.070 22 C -0.119 4.119 23 C -0.059 4.059 24 C -0.031 4.031 25 N 0.021 4.979 26 O -0.160 6.160 27 O -0.134 6.134 28 H 0.264 0.736 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.823 -20.972 -3.574 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.075 0.925 9 C 0.127 3.873 10 N -0.315 5.315 11 C 0.016 3.984 12 C -0.185 4.185 13 C -0.222 4.222 14 C -0.213 4.213 15 C 0.318 3.682 16 O -0.407 6.407 17 C -0.161 4.161 18 C -0.109 4.109 19 C 0.013 3.987 20 C -0.129 4.129 21 C -0.088 4.088 22 C -0.137 4.137 23 C -0.078 4.078 24 C -0.113 4.113 25 N 0.544 4.456 26 O -0.375 6.375 27 O -0.354 6.354 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.128 0.872 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.146 0.854 39 H 0.168 0.832 40 H 0.166 0.834 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 13.796 -20.723 -3.622 25.157 hybrid contribution 0.263 0.929 0.180 0.982 sum 14.059 -19.794 -3.442 24.522 Atomic orbital electron populations 1.69919 1.05981 1.27185 1.50120 1.24923 0.94877 0.99184 0.94989 0.86563 0.79540 0.82733 0.78608 1.20266 1.21131 1.20159 1.21372 0.93288 0.90615 1.51496 0.92512 1.19334 0.87407 0.81895 0.98668 1.48124 1.45258 1.34409 1.03707 1.21070 0.94941 0.94874 0.87502 1.22961 1.01665 0.93695 1.00148 1.23027 1.01134 0.95490 1.02522 1.22917 1.03417 1.04257 0.90682 1.18030 0.82364 0.83185 0.84632 1.90831 1.57861 1.61312 1.30686 1.23508 0.97725 0.96883 0.98009 1.22398 0.94493 0.93004 1.00988 1.18902 0.95124 0.93884 0.90786 1.21514 0.96122 0.98155 0.97078 1.21510 0.95404 0.93116 0.98787 1.21257 1.00054 1.00842 0.91594 1.20907 0.92093 0.94418 1.00343 1.21195 1.01668 1.03089 0.85386 1.43581 1.01126 0.98564 1.02368 1.94536 1.70694 1.56656 1.15622 1.94634 1.00205 1.46947 1.93663 0.92603 0.94726 0.93636 0.89156 0.91606 0.87193 0.89305 0.89078 0.88901 0.88726 0.85393 0.83241 0.83353 0.83780 0.83610 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.53 -14.86 9.39 -34.44 -0.32 -15.19 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.25 6.34 5.16 -5.19 -0.03 6.31 16 10 N -0.58 -12.09 2.46 -176.71 -0.43 -12.53 16 11 C 0.14 2.15 5.40 -4.04 -0.02 2.13 16 12 C -0.17 -2.18 6.01 -90.62 -0.54 -2.72 16 13 C -0.18 -1.87 9.89 -26.69 -0.26 -2.13 16 14 C -0.18 -1.79 10.26 -26.69 -0.27 -2.07 16 15 C 0.53 11.15 7.61 -12.97 -0.10 11.05 16 16 O -0.53 -13.68 15.81 5.20 0.08 -13.60 16 17 C -0.14 -2.15 8.56 -37.51 -0.32 -2.47 16 18 C -0.09 -1.35 8.45 -37.16 -0.31 -1.66 16 19 C 0.01 0.17 5.83 -105.06 -0.61 -0.44 16 20 C -0.11 -0.89 9.35 -39.11 -0.37 -1.25 16 21 C -0.07 -0.39 10.03 -39.65 -0.40 -0.78 16 22 C -0.12 -0.66 10.04 -39.46 -0.40 -1.06 16 23 C -0.06 -0.49 9.65 -39.65 -0.38 -0.87 16 24 C -0.03 -0.37 6.52 -79.48 -0.52 -0.89 16 25 N 0.02 0.32 4.27 34.19 0.15 0.46 16 26 O -0.16 -2.41 18.94 -29.46 -0.56 -2.96 16 27 O -0.13 -2.28 16.54 -29.46 -0.49 -2.77 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 31 H 0.09 1.44 8.07 -51.93 -0.42 1.03 16 32 H 0.07 0.81 5.83 -51.93 -0.30 0.51 16 33 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.09 0.74 7.35 -51.93 -0.38 0.36 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.13 1.46 3.50 -52.48 -0.18 1.28 16 39 H 0.15 2.71 5.80 -52.48 -0.30 2.41 16 40 H 0.15 0.94 6.46 -52.49 -0.34 0.60 16 41 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 42 H 0.15 0.36 8.06 -52.49 -0.42 -0.07 16 43 H 0.15 0.99 8.01 -52.49 -0.42 0.57 16 LS Contribution 375.07 15.07 5.65 5.65 Total: -1.00 -34.95 375.07 -10.08 -45.02 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -5.24 Total: 0.02 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -4.96 Total: -10.37 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.45 Total: -37.79 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.96 Total: -19.33 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.95 -10.08 -45.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069366733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.492 kcal (2) G-P(sol) polarization free energy of solvation -34.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds