Wall clock time and date at job start Tue Mar 31 2020 05:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46999 * 2 1 4 4 N 1.46501 * 109.47145 * 119.99650 * 2 1 3 5 5 C 1.46497 * 119.99973 * 321.71080 * 4 2 1 6 6 C 1.50702 * 109.46751 * 269.98946 * 5 4 2 7 7 H 1.08002 * 119.99940 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00155 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00476 * 180.02562 * 8 6 5 10 10 Si 1.86808 * 119.99880 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.46798 * 89.99756 * 10 8 6 12 12 H 1.48499 * 109.47443 * 209.99617 * 10 8 6 13 13 H 1.48497 * 109.47051 * 330.00316 * 10 8 6 14 14 C 1.34779 * 119.99802 * 141.69859 * 4 2 1 15 15 O 1.21631 * 119.99772 * 187.74739 * 14 4 2 16 16 C 1.47317 * 120.00024 * 7.75504 * 14 4 2 17 17 C 1.35207 * 122.42930 * 186.17845 * 16 14 4 18 18 S 1.71010 * 109.10477 * 179.75528 * 17 16 14 19 19 C 1.76000 * 90.57379 * 0.33782 * 18 17 16 20 20 C 1.47914 * 125.31930 * 179.97438 * 19 18 17 21 21 C 1.39532 * 120.13825 * 359.69341 * 20 19 18 22 22 C 1.37976 * 119.85658 * 180.02562 * 21 20 19 23 23 C 1.38340 * 120.14119 * 0.02562 * 22 21 20 24 24 C 1.38347 * 120.28479 * 0.25541 * 23 22 21 25 25 C 1.37977 * 120.13907 * 359.48826 * 24 23 22 26 26 N 1.29838 * 109.36283 * 359.65780 * 19 18 17 27 27 H 1.08991 * 109.47331 * 299.99988 * 1 2 3 28 28 H 1.09008 * 109.46422 * 60.00216 * 1 2 3 29 29 H 1.09003 * 109.47022 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47325 * 240.00235 * 2 1 3 31 31 H 1.08999 * 109.47006 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47575 * 299.99825 * 3 2 1 33 33 H 1.09005 * 109.46890 * 59.99968 * 3 2 1 34 34 H 1.08995 * 109.47409 * 29.99341 * 5 4 2 35 35 H 1.09002 * 109.46997 * 149.99700 * 5 4 2 36 36 H 0.96995 * 120.00050 * 180.02562 * 9 8 6 37 37 H 1.08001 * 125.44452 * 359.97438 * 17 16 14 38 38 H 1.07998 * 120.07038 * 0.02562 * 21 20 19 39 39 H 1.08003 * 119.92619 * 180.02562 * 22 21 20 40 40 H 1.08006 * 119.86136 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.93053 * 179.72649 * 24 23 22 42 42 H 1.08000 * 120.07088 * 180.25898 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.3236 -0.5209 2.4748 6 6 1.9157 0.6497 3.2167 7 1 2.7279 1.2113 2.7792 8 6 1.4199 1.0043 4.4533 9 7 1.9362 2.0261 5.1005 10 14 0.0146 0.0332 5.2096 11 1 0.5644 -1.0795 6.0250 12 1 -0.7957 0.9275 6.0749 13 1 -0.8418 -0.5203 4.1301 14 6 3.1066 -1.4821 1.1203 15 8 3.4298 -2.1646 2.0738 16 6 3.9046 -1.5204 -0.1174 17 6 4.9306 -2.3835 -0.2921 18 16 5.6090 -2.1400 -1.8429 19 6 4.4511 -0.8547 -2.1670 20 6 4.3756 -0.0668 -3.4165 21 6 5.2732 -0.3138 -4.4558 22 6 5.1979 0.4250 -5.6187 23 6 4.2354 1.4092 -5.7552 24 6 3.3461 1.6630 -4.7262 25 6 3.4076 0.9276 -3.5604 26 7 3.6692 -0.7108 -1.1405 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.2650 -0.3372 2.2916 35 1 1.4374 -1.4251 3.0728 36 1 1.5876 2.2753 5.9707 37 1 5.2656 -3.1128 0.4306 38 1 6.0254 -1.0816 -4.3502 39 1 5.8919 0.2345 -6.4240 40 1 4.1808 1.9851 -6.6673 41 1 2.5998 2.4357 -4.8373 42 1 2.7101 1.1238 -2.7594 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069368457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:35 Heat of formation + Delta-G solvation = 52.086290 kcal Electronic energy + Delta-G solvation = -25845.587473 eV Core-core repulsion = 22304.194109 eV Total energy + Delta-G solvation = -3541.393364 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.50644 -39.27092 -38.02661 -36.05868 -32.73014 -32.49545 -31.25749 -30.88464 -29.45384 -28.44093 -26.62537 -25.60634 -23.73537 -22.87447 -21.93602 -21.39671 -19.91676 -18.93858 -17.82471 -17.21817 -16.83749 -16.05039 -15.88684 -15.18807 -15.07434 -15.00339 -14.45960 -14.13621 -13.76409 -13.68549 -13.46066 -13.39513 -13.14032 -12.86228 -12.47322 -12.36482 -12.03592 -11.92688 -11.69624 -11.44934 -11.36385 -11.24154 -10.86120 -10.79169 -10.51233 -10.41142 -10.07657 -10.03858 -9.57666 -9.47238 -9.40781 -9.22146 -8.96639 -8.53906 -8.33585 -7.61898 -6.04390 -4.02113 0.11377 1.12562 1.13805 1.23519 1.54307 2.33927 3.31620 3.37638 3.39848 3.57378 3.64798 3.91300 3.97818 4.43108 4.62114 4.67031 4.77923 4.89290 5.13346 5.19744 5.28440 5.29128 5.32498 5.52449 5.57876 5.68508 5.74666 5.82826 5.95776 6.14690 6.18136 6.22655 6.24837 6.34871 6.44676 6.52671 6.65525 6.73519 6.84315 7.01909 7.12864 7.39362 7.51276 7.65654 8.29618 8.51200 8.89887 9.01469 9.56043 11.08742 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.003694 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.994297 B = 7578.280003 C = 8565.820704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.128 3.872 3 C -0.148 4.148 4 N -0.566 5.566 5 C 0.209 3.791 6 C -0.523 4.523 7 H 0.077 0.923 8 C 0.072 3.928 9 N -0.898 5.898 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.580 3.420 15 O -0.539 6.539 16 C 0.029 3.971 17 C -0.216 4.216 18 S 0.155 5.845 19 C 0.081 3.919 20 C -0.019 4.019 21 C -0.101 4.101 22 C -0.120 4.120 23 C -0.108 4.108 24 C -0.119 4.119 25 C -0.073 4.073 26 N -0.415 5.415 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.110 0.890 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.190 0.810 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.663 -4.396 -24.376 25.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.024 3.976 3 C -0.206 4.206 4 N -0.296 5.296 5 C 0.088 3.912 6 C -0.562 4.562 7 H 0.095 0.905 8 C -0.130 4.130 9 N -0.537 5.537 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.364 3.636 15 O -0.417 6.417 16 C -0.107 4.107 17 C -0.357 4.357 18 S 0.413 5.587 19 C -0.194 4.194 20 C -0.023 4.023 21 C -0.122 4.122 22 C -0.138 4.138 23 C -0.127 4.127 24 C -0.138 4.138 25 C -0.094 4.094 26 N -0.130 5.130 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.127 0.873 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.207 0.793 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.202 -4.770 -24.155 25.165 hybrid contribution -1.089 -0.298 1.507 1.883 sum 4.113 -5.068 -22.647 23.569 Atomic orbital electron populations 1.22189 0.95876 1.01563 1.02488 1.21531 0.93207 0.94396 0.88489 1.22063 1.01269 0.95809 1.01504 1.47836 1.26973 1.43647 1.11127 1.19794 0.92775 0.98069 0.80523 1.21345 1.19510 1.12681 1.02616 0.90469 1.24839 0.96689 0.94877 0.96562 1.69896 1.42128 1.27174 1.14463 0.86900 0.82843 0.80369 0.79908 1.19969 1.21133 1.19031 1.17065 0.80914 0.80901 0.84765 1.90770 1.69929 1.43623 1.37383 1.20558 0.98721 0.95627 0.95763 1.26520 1.00945 1.05972 1.02288 1.83562 1.34412 1.32231 1.08463 1.26109 0.96280 0.99518 0.97495 1.17799 0.98060 0.96612 0.89836 1.21137 0.98136 0.99832 0.93063 1.21004 0.99056 0.96346 0.97357 1.21316 0.95030 0.97428 0.98940 1.21188 0.99495 0.99784 0.93291 1.21429 0.96871 0.93187 0.97961 1.67325 1.23555 1.22707 0.99386 0.91111 0.92165 0.93132 0.87302 0.92911 0.93579 0.90904 0.94336 0.94592 0.92647 0.79259 0.85831 0.85484 0.85739 0.85293 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 8.53 37.16 0.32 -2.32 16 2 C 0.13 2.30 2.56 -67.93 -0.17 2.13 16 3 C -0.15 -2.68 8.64 37.16 0.32 -2.35 16 4 N -0.57 -12.51 2.38 -168.76 -0.40 -12.91 16 5 C 0.21 5.24 4.03 -5.19 -0.02 5.22 16 6 C -0.52 -15.11 8.90 -34.44 -0.31 -15.42 16 7 H 0.08 2.45 7.72 -52.49 -0.40 2.05 16 8 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 9 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 10 Si 0.87 21.82 27.47 -169.99 -4.67 17.15 16 11 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 14 C 0.58 12.93 7.62 -12.57 -0.10 12.83 16 15 O -0.54 -13.68 16.22 5.25 0.09 -13.60 16 16 C 0.03 0.51 6.38 -84.93 -0.54 -0.03 16 17 C -0.22 -3.19 10.57 29.65 0.31 -2.87 16 18 S 0.15 1.70 22.13 -107.50 -2.38 -0.68 16 19 C 0.08 1.06 7.32 -14.43 -0.11 0.95 16 20 C -0.02 -0.21 5.87 -104.97 -0.62 -0.83 16 21 C -0.10 -0.89 9.60 -39.20 -0.38 -1.26 16 22 C -0.12 -0.87 10.03 -39.64 -0.40 -1.27 16 23 C -0.11 -0.79 10.04 -39.50 -0.40 -1.18 16 24 C -0.12 -1.01 10.03 -39.64 -0.40 -1.41 16 25 C -0.07 -0.78 9.68 -39.20 -0.38 -1.16 16 26 N -0.41 -6.56 5.31 -8.10 -0.04 -6.60 16 27 H 0.07 1.27 6.49 -51.93 -0.34 0.93 16 28 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.11 1.83 4.93 -52.12 -0.26 1.57 16 31 H 0.05 1.01 7.44 -51.93 -0.39 0.63 16 32 H 0.05 0.67 7.75 -51.93 -0.40 0.27 16 33 H 0.07 1.54 7.04 -51.93 -0.37 1.18 16 34 H 0.04 0.92 4.72 -51.93 -0.25 0.67 16 35 H 0.04 0.96 6.76 -51.93 -0.35 0.61 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.19 2.63 8.00 -52.49 -0.42 2.21 16 38 H 0.12 0.88 7.29 -52.49 -0.38 0.50 16 39 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 40 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 41 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.14 1.59 7.27 -52.49 -0.38 1.21 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -34.19 357.68 -9.41 -43.60 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.21 Total: 1.69 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -2.96 Total: -6.96 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.33 Total: -46.60 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.09 Total: -13.60 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.38 Total: -0.68 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.19 -9.41 -43.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069368457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.687 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds