Wall clock time and date at job start Tue Mar 31 2020 05:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47617 * 2 1 4 4 N 1.46500 * 109.47452 * 180.02562 * 3 2 1 5 5 C 1.36824 * 120.00057 * 264.42900 * 4 3 2 6 6 H 1.07998 * 119.99936 * 130.12083 * 5 4 3 7 7 C 1.39068 * 120.00058 * 310.12385 * 5 4 3 8 8 N 1.31351 * 119.99794 * 351.04845 * 7 5 4 9 9 Si 1.86797 * 119.99919 * 171.05009 * 7 5 4 10 10 H 1.48498 * 109.47465 * 90.00303 * 9 7 5 11 11 H 1.48506 * 109.47062 * 210.00043 * 9 7 5 12 12 H 1.48503 * 109.47403 * 329.99427 * 9 7 5 13 13 C 1.34782 * 119.99840 * 84.42708 * 4 3 2 14 14 O 1.21618 * 119.99947 * 2.55033 * 13 4 3 15 15 C 1.47537 * 119.99590 * 182.55298 * 13 4 3 16 16 C 1.39834 * 120.00918 * 137.44543 * 15 13 4 17 17 C 1.37087 * 119.99164 * 180.02562 * 16 15 13 18 18 C 1.39757 * 120.00684 * 0.02562 * 17 16 15 19 19 C 1.47697 * 119.98769 * 179.97438 * 18 17 16 20 20 N 1.30297 * 125.47442 * 180.30263 * 19 18 17 21 21 C 1.31145 * 117.07479 * 180.20403 * 20 19 18 22 22 C 1.50696 * 122.08057 * 179.79054 * 21 20 19 23 23 C 1.33895 * 115.83646 * 359.52782 * 21 20 19 24 24 S 1.76183 * 125.46951 * 0.02562 * 19 18 17 25 25 C 1.39748 * 120.02228 * 0.25347 * 18 17 16 26 26 C 1.37092 * 120.00798 * 359.48659 * 25 18 17 27 27 H 1.08999 * 109.46908 * 300.00037 * 1 2 3 28 28 H 1.08999 * 109.47330 * 59.99444 * 1 2 3 29 29 H 1.09000 * 109.47490 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46908 * 239.99963 * 2 1 3 31 31 H 1.08999 * 109.47330 * 120.00556 * 2 1 3 32 32 H 1.08999 * 109.47012 * 60.00027 * 3 2 1 33 33 H 1.09000 * 109.46740 * 300.00405 * 3 2 1 34 34 H 0.97001 * 119.99596 * 180.02562 * 8 7 5 35 35 H 1.08004 * 120.00630 * 359.97438 * 16 15 13 36 36 H 1.08001 * 119.99446 * 180.02562 * 17 16 15 37 37 H 1.09000 * 109.47472 * 269.71318 * 22 21 20 38 38 H 1.09001 * 109.46908 * 149.71157 * 22 21 20 39 39 H 1.09003 * 109.47433 * 29.71439 * 22 21 20 40 40 H 1.08000 * 125.90044 * 180.28943 * 23 21 20 41 41 H 1.08006 * 119.99771 * 179.74747 * 25 18 17 42 42 H 1.07999 * 120.00106 * 180.25249 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1897 1.5572 1.1784 6 1 4.9817 0.8615 1.4129 7 6 3.8656 2.5698 2.0749 8 7 3.0293 3.5184 1.7199 9 14 4.6197 2.5808 3.7839 10 1 5.8902 3.3491 3.7594 11 1 3.6752 3.2164 4.7376 12 1 4.8929 1.1858 4.2135 13 6 4.1784 1.3292 -1.1627 14 8 3.5708 1.2738 -2.2147 15 6 5.6527 1.2724 -1.1583 16 6 6.3200 0.3628 -1.9846 17 6 7.6899 0.3101 -1.9799 18 6 8.4194 1.1648 -1.1490 19 6 9.8952 1.1072 -1.1439 20 7 10.6783 1.8471 -0.4110 21 6 11.9699 1.6604 -0.5413 22 6 12.9772 2.4569 0.2472 23 6 12.3375 0.7144 -1.4146 24 16 10.8794 0.0222 -2.1228 25 6 7.7528 2.0700 -0.3188 26 6 6.3831 2.1272 -0.3268 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.8036 4.2249 2.3451 35 1 5.7563 -0.2986 -2.6258 36 1 8.2053 -0.3922 -2.6183 37 1 13.2506 3.3519 -0.3116 38 1 13.8663 1.8500 0.4187 39 1 12.5436 2.7448 1.2049 40 1 13.3522 0.4249 -1.6448 41 1 8.3169 2.7276 0.3261 42 1 5.8682 2.8296 0.3118 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069415809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:15 Heat of formation + Delta-G solvation = 26.762940 kcal Electronic energy + Delta-G solvation = -25054.327970 eV Core-core repulsion = 21511.836503 eV Total energy + Delta-G solvation = -3542.491467 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.89827 -39.25505 -37.66055 -35.13645 -33.16139 -32.60638 -31.38340 -30.60801 -30.10121 -27.70873 -26.19812 -25.36170 -24.16728 -22.26020 -21.86248 -20.72892 -19.37632 -19.11547 -17.97044 -17.63353 -16.16685 -15.93601 -15.09452 -14.94859 -14.76680 -14.39427 -14.27132 -14.10967 -13.69273 -13.49992 -13.22409 -13.04716 -12.98213 -12.85103 -12.62651 -12.47458 -11.91206 -11.82460 -11.48520 -11.42191 -11.31427 -11.26978 -11.05901 -10.80104 -10.60868 -10.39684 -10.36538 -9.79118 -9.68928 -9.66291 -9.16545 -9.12164 -8.62042 -8.55218 -7.85335 -7.45513 -6.45284 -4.27807 0.25946 1.27123 1.64683 1.67144 1.89069 2.85045 3.08219 3.17281 3.20128 3.77877 3.95261 4.03351 4.37113 4.68022 4.85956 4.91895 5.03860 5.12500 5.26861 5.34598 5.42944 5.53489 5.70111 5.72961 5.76546 5.85519 5.88861 5.97627 6.08522 6.13490 6.30963 6.43458 6.48834 6.50768 6.61840 6.73160 6.76448 6.88997 7.05766 7.10687 7.28397 7.34369 7.38623 7.73103 7.94901 8.28250 8.95761 9.36660 9.82852 10.57047 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.003438 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.476401 B = 8142.259989 C = 9630.887289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.124 3.876 4 N -0.427 5.427 5 C -0.344 4.344 6 H 0.087 0.913 7 C 0.050 3.950 8 N -0.859 5.859 9 Si 0.909 3.091 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.267 1.267 13 C 0.511 3.489 14 O -0.596 6.596 15 C -0.061 4.061 16 C -0.087 4.087 17 C -0.108 4.108 18 C -0.043 4.043 19 C 0.145 3.855 20 N -0.470 5.470 21 C 0.073 3.927 22 C -0.080 4.080 23 C -0.268 4.268 24 S 0.074 5.926 25 C -0.084 4.084 26 C -0.062 4.062 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.272 0.728 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.175 0.825 41 H 0.132 0.868 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.037 -4.612 -2.283 14.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.001 3.999 4 N -0.143 5.143 5 C -0.472 4.472 6 H 0.104 0.896 7 C -0.157 4.157 8 N -0.494 5.494 9 Si 0.735 3.265 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.192 1.192 13 C 0.300 3.700 14 O -0.482 6.482 15 C -0.066 4.066 16 C -0.106 4.106 17 C -0.128 4.128 18 C -0.047 4.047 19 C -0.129 4.129 20 N -0.184 5.184 21 C -0.060 4.060 22 C -0.140 4.140 23 C -0.407 4.407 24 S 0.331 5.669 25 C -0.105 4.105 26 C -0.080 4.080 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.192 0.808 41 H 0.150 0.850 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 12.260 -4.891 -3.095 13.558 hybrid contribution 1.098 0.440 1.399 1.832 sum 13.358 -4.452 -1.697 14.182 Atomic orbital electron populations 1.21655 0.96482 1.00505 1.01446 1.21863 0.94841 0.99374 1.01394 1.21333 0.81503 0.94222 1.02864 1.43224 1.04615 1.61779 1.04726 1.19340 1.19086 1.13279 0.95490 0.89565 1.25549 0.96291 0.93973 0.99893 1.69855 1.32555 1.11058 1.35897 0.86198 0.79203 0.79046 0.82048 1.19723 1.20633 1.19165 1.18430 0.86478 0.80795 0.84333 1.90645 1.69655 1.56360 1.31558 1.20300 0.94871 0.95924 0.95460 1.20891 0.93196 0.98310 0.98198 1.20745 0.94103 0.98907 0.99093 1.17876 0.85944 1.00162 1.00709 1.25965 0.97369 0.94560 0.95036 1.66365 1.03263 1.25331 1.23461 1.20202 0.90588 0.97262 0.97977 1.20396 0.95322 0.98723 0.99518 1.26711 1.02670 1.05150 1.06167 1.84884 0.98740 1.39745 1.43519 1.21095 0.94301 0.97448 0.97676 1.21696 0.92586 0.98169 0.95580 0.92975 0.93073 0.93590 0.92804 0.92288 0.88761 0.92721 0.91777 0.85253 0.86208 0.90677 0.90897 0.90451 0.80798 0.84996 0.82639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 37.15 0.37 -1.95 16 2 C -0.14 -2.69 6.22 -26.73 -0.17 -2.85 16 3 C 0.12 2.86 4.85 -4.04 -0.02 2.84 16 4 N -0.43 -10.38 2.44 -116.00 -0.28 -10.66 16 5 C -0.34 -8.24 6.10 -15.02 -0.09 -8.33 16 6 H 0.09 2.05 7.28 -52.49 -0.38 1.67 16 7 C 0.05 1.20 4.86 -17.45 -0.08 1.12 16 8 N -0.86 -21.61 11.74 55.50 0.65 -20.96 16 9 Si 0.91 18.70 29.56 -169.99 -5.03 13.67 16 10 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 11 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 13 C 0.51 12.40 7.23 -12.47 -0.09 12.31 16 14 O -0.60 -15.70 16.61 5.26 0.09 -15.61 16 15 C -0.06 -1.29 5.29 -104.91 -0.55 -1.84 16 16 C -0.09 -1.57 9.62 -39.40 -0.38 -1.94 16 17 C -0.11 -1.70 9.56 -39.43 -0.38 -2.07 16 18 C -0.04 -0.70 5.88 -104.90 -0.62 -1.32 16 19 C 0.15 2.21 7.34 -14.34 -0.11 2.10 16 20 N -0.47 -7.24 10.09 -7.58 -0.08 -7.32 16 21 C 0.07 0.92 6.69 -84.41 -0.56 0.35 16 22 C -0.08 -0.73 10.28 36.00 0.37 -0.36 16 23 C -0.27 -2.94 11.09 29.21 0.32 -2.62 16 24 S 0.07 0.89 22.38 -107.50 -2.41 -1.52 16 25 C -0.08 -1.48 9.64 -39.43 -0.38 -1.86 16 26 C -0.06 -1.23 8.06 -39.40 -0.32 -1.55 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.09 2.28 6.14 -51.93 -0.32 1.96 16 33 H 0.05 1.32 7.56 -51.93 -0.39 0.93 16 34 H 0.27 6.49 8.31 -40.82 -0.34 6.16 16 35 H 0.13 2.21 8.06 -52.48 -0.42 1.78 16 36 H 0.12 1.55 7.28 -52.49 -0.38 1.17 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.13 2.22 7.81 -52.48 -0.41 1.81 16 42 H 0.16 3.38 6.25 -52.49 -0.33 3.05 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -28.21 368.60 -9.76 -37.97 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.57 Total: 6.85 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -2.69 Total: -7.99 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.29 Total: -38.94 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.09 Total: -15.61 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.41 Total: -1.52 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.21 -9.76 -37.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069415809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.734 kcal (2) G-P(sol) polarization free energy of solvation -28.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds