Wall clock time and date at job start Tue Mar 31 2020 04:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20233 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47167 * 89.99892 * 6 5 4 8 8 O 1.21283 * 120.00356 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00007 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99802 * 359.97438 * 9 7 6 11 11 C 1.50706 * 109.46880 * 90.00526 * 10 9 7 12 12 H 1.07997 * 120.00116 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99722 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00456 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99933 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47335 * 89.99646 * 15 13 11 17 17 H 1.48505 * 109.47413 * 209.99749 * 15 13 11 18 18 H 1.48506 * 109.47205 * 329.99634 * 15 13 11 19 19 C 1.46498 * 120.00315 * 179.97438 * 9 7 6 20 20 C 1.50700 * 109.47243 * 89.99917 * 19 9 7 21 21 C 1.38679 * 120.41826 * 269.72531 * 20 19 9 22 22 C 1.38626 * 118.42187 * 179.78141 * 21 20 19 23 23 C 1.38232 * 119.15953 * 0.51248 * 22 21 20 24 24 N 1.31858 * 120.76271 * 359.72180 * 23 22 21 25 25 C 1.31883 * 121.72815 * 0.02562 * 24 23 22 26 26 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 27 27 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 30 30 H 1.07997 * 122.54296 * 359.95309 * 3 2 1 31 31 H 1.08001 * 122.53810 * 179.97438 * 4 3 2 32 32 H 1.09010 * 109.46884 * 209.99886 * 6 5 4 33 33 H 1.09002 * 109.47203 * 329.99303 * 6 5 4 34 34 H 1.09003 * 109.47199 * 210.00232 * 10 9 7 35 35 H 1.08996 * 109.47040 * 329.99992 * 10 9 7 36 36 H 0.96999 * 120.00651 * 180.02562 * 14 13 11 37 37 H 1.09002 * 109.47431 * 209.99733 * 19 9 7 38 38 H 1.09002 * 109.47297 * 330.00004 * 19 9 7 39 39 H 1.07999 * 120.78791 * 0.02562 * 21 20 19 40 40 H 1.07995 * 120.42125 * 180.21569 * 22 21 20 41 41 H 1.07993 * 119.62057 * 179.74752 * 23 22 21 42 42 H 1.07997 * 119.62046 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3861 -0.9770 0.0005 7 6 5.8564 -1.1535 1.4212 8 8 5.1187 -0.8763 2.3431 9 7 7.0973 -1.6184 1.6674 10 6 7.9886 -1.9527 0.5538 11 6 8.7929 -0.7369 0.1718 12 1 8.6537 0.1920 0.7048 13 6 9.7056 -0.8101 -0.8590 14 7 9.8748 -1.9411 -1.5084 15 14 10.7021 0.6971 -1.3330 16 1 11.9631 0.7235 -0.5492 17 1 11.0212 0.6438 -2.7824 18 1 9.9141 1.9223 -1.0444 19 6 7.5547 -1.7895 3.0486 20 6 7.2130 -3.1786 3.5226 21 6 6.0004 -3.4289 4.1472 22 6 5.7269 -4.7229 4.5625 23 6 6.6697 -5.7116 4.3514 24 7 7.8146 -5.4360 3.7582 25 6 8.1065 -4.2178 3.3457 26 16 2.5210 -1.4371 0.0077 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.8669 2.0895 -0.0007 31 1 4.3721 1.6351 0.0002 32 1 5.4136 -1.9379 -0.5135 33 1 6.0389 -0.2713 -0.5134 34 1 8.6629 -2.7541 0.8561 35 1 7.3958 -2.2795 -0.3005 36 1 10.5172 -1.9928 -2.2334 37 1 8.6342 -1.6453 3.0944 38 1 7.0628 -1.0563 3.6878 39 1 5.2846 -2.6354 4.3028 40 1 4.7911 -4.9547 5.0492 41 1 6.4660 -6.7213 4.6756 42 1 9.0547 -4.0302 2.8641 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069581930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:29 Heat of formation + Delta-G solvation = 24.018720 kcal Electronic energy + Delta-G solvation = -25247.366396 eV Core-core repulsion = 21704.755931 eV Total energy + Delta-G solvation = -3542.610465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.08020 -39.07686 -37.60078 -35.26669 -33.28942 -32.66321 -32.11889 -31.34470 -29.57224 -27.57756 -26.20041 -24.54813 -23.43208 -22.88890 -22.60041 -21.73746 -19.02651 -18.19402 -17.01237 -16.73879 -16.62717 -16.32875 -15.77861 -15.53977 -15.15173 -14.82759 -14.47366 -14.22714 -13.85222 -13.56997 -13.24785 -13.10852 -12.82952 -12.76459 -12.54623 -12.42982 -12.31346 -11.78746 -11.73751 -11.66822 -11.53108 -11.17681 -11.06454 -11.02216 -10.76364 -10.47331 -10.27058 -9.88281 -9.60148 -9.27138 -9.23124 -8.77439 -8.62628 -8.20473 -8.14792 -7.85777 -6.25051 -4.33749 1.21317 1.31448 1.52674 1.84430 2.24564 2.98640 3.18774 3.25922 3.27354 3.32483 3.79381 4.20200 4.29654 4.66872 4.93780 5.02516 5.07491 5.10033 5.16174 5.22659 5.25889 5.29705 5.41303 5.45853 5.55002 5.67231 5.70352 5.87062 5.89207 5.95089 6.05864 6.14252 6.19439 6.35669 6.39980 6.55115 6.57905 6.64271 6.77988 6.93581 7.08847 7.40560 7.68850 7.96362 8.18187 8.20276 8.70624 8.90143 9.35157 10.81493 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.007149 B = 0.005221 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3915.685576 B = 5361.356709 C = 8583.558156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.194 4.194 3 C -0.132 4.132 4 C -0.135 4.135 5 C -0.135 4.135 6 C -0.069 4.069 7 C 0.522 3.478 8 O -0.562 6.562 9 N -0.590 5.590 10 C 0.236 3.764 11 C -0.543 4.543 12 H 0.062 0.938 13 C 0.068 3.932 14 N -0.888 5.888 15 Si 0.896 3.104 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.162 3.838 20 C -0.145 4.145 21 C -0.056 4.056 22 C -0.181 4.181 23 C 0.089 3.911 24 N -0.489 5.489 25 C 0.114 3.886 26 S 0.094 5.906 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.266 0.734 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.150 0.850 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.530 -0.373 5.242 13.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.312 4.312 3 C -0.163 4.163 4 C -0.164 4.164 5 C -0.253 4.253 6 C -0.110 4.110 7 C 0.310 3.690 8 O -0.442 6.442 9 N -0.321 5.321 10 C 0.117 3.883 11 C -0.581 4.581 12 H 0.081 0.919 13 C -0.136 4.136 14 N -0.526 5.526 15 Si 0.723 3.277 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.197 1.197 19 C 0.038 3.962 20 C -0.148 4.148 21 C -0.082 4.082 22 C -0.201 4.201 23 C -0.068 4.068 24 N -0.198 5.198 25 C -0.043 4.043 26 S 0.358 5.642 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.117 0.883 33 H 0.142 0.858 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.167 0.833 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.456 -2.544 5.423 13.821 hybrid contribution 0.456 2.899 -0.331 2.953 sum -12.000 0.354 5.091 13.040 Atomic orbital electron populations 1.20265 0.88298 1.02743 1.02272 1.24354 0.99538 0.95961 1.11311 1.19969 0.92918 0.98835 1.04587 1.20008 0.96078 0.95984 1.04374 1.23946 0.97442 0.96230 1.07663 1.20201 0.90585 1.04026 0.96235 1.20251 0.81538 0.76644 0.90582 1.90598 1.55113 1.52312 1.46208 1.48227 1.13964 1.62902 1.06966 1.19493 0.88816 0.96717 0.83313 1.21469 1.22070 0.97118 1.17453 0.91939 1.24933 0.96656 0.96229 0.95786 1.69916 1.35212 1.25140 1.22317 0.86527 0.80462 0.82913 0.77780 1.20461 1.21039 1.19743 1.20123 1.00804 0.91304 0.84008 1.21440 0.95540 0.98592 0.99259 1.21668 0.95872 0.96985 0.93701 1.22103 1.00980 0.94192 1.02842 1.22693 0.89507 0.99308 0.95280 1.67703 1.19847 1.22057 1.10176 1.22810 0.99358 0.87347 0.94769 1.84070 0.96887 1.09679 1.73538 0.91150 0.90910 0.91644 0.84877 0.84528 0.88311 0.85793 0.94449 0.94408 0.92390 0.89038 0.89826 0.84493 0.85292 0.83307 0.82512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.38 36.01 0.37 -0.37 16 2 C -0.19 -2.60 6.51 -36.00 -0.23 -2.83 16 3 C -0.13 -1.83 10.05 -41.21 -0.41 -2.25 16 4 C -0.13 -2.13 10.05 -41.21 -0.41 -2.54 16 5 C -0.14 -2.27 5.00 -36.00 -0.18 -2.45 16 6 C -0.07 -1.24 4.75 -29.04 -0.14 -1.38 16 7 C 0.52 10.30 7.66 -10.99 -0.08 10.21 16 8 O -0.56 -11.79 15.27 5.55 0.08 -11.71 16 9 N -0.59 -11.63 2.44 -176.43 -0.43 -12.06 16 10 C 0.24 5.26 4.97 -5.19 -0.03 5.23 16 11 C -0.54 -13.25 9.28 -34.44 -0.32 -13.57 16 12 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 13 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -23.58 13.29 55.43 0.74 -22.84 16 15 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 C 0.16 2.81 5.56 -5.19 -0.03 2.78 16 20 C -0.15 -2.38 5.48 -104.48 -0.57 -2.95 16 21 C -0.06 -0.86 9.86 -39.28 -0.39 -1.24 16 22 C -0.18 -2.42 10.11 -39.44 -0.40 -2.82 16 23 C 0.09 1.23 11.18 -17.54 -0.20 1.04 16 24 N -0.49 -8.02 10.36 -13.25 -0.14 -8.16 16 25 C 0.11 1.90 10.86 -17.55 -0.19 1.71 16 26 S 0.09 1.41 23.31 -107.50 -2.51 -1.09 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 32 H 0.10 1.73 7.40 -51.92 -0.38 1.34 16 33 H 0.12 2.30 8.00 -51.93 -0.42 1.88 16 34 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.04 0.88 6.44 -51.93 -0.33 0.54 16 36 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.09 1.54 8.02 -51.93 -0.42 1.12 16 38 H 0.08 1.44 7.37 -51.93 -0.38 1.06 16 39 H 0.14 2.14 7.71 -52.49 -0.40 1.73 16 40 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 41 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.16 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -28.76 376.55 -10.59 -39.35 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.69 Total: 5.88 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -3.31 Total: -9.83 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.17 Total: -43.06 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.08 Total: -11.71 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.51 Total: -1.09 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.76 -10.59 -39.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069581930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.370 kcal (2) G-P(sol) polarization free energy of solvation -28.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds