Wall clock time and date at job start Tue Mar 31 2020 04:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29423 * 124.80291 * 2 1 4 4 C 1.30943 * 117.36826 * 179.97438 * 3 2 1 5 5 C 1.50700 * 122.90936 * 180.02562 * 4 3 2 6 6 C 1.35682 * 114.18223 * 359.97438 * 4 3 2 7 7 C 1.46658 * 126.13029 * 179.97438 * 6 4 3 8 8 O 1.21695 * 119.99899 * 354.11919 * 7 6 4 9 9 N 1.34771 * 120.00091 * 174.11582 * 7 6 4 10 10 C 1.46504 * 120.00188 * 182.97397 * 9 7 6 11 11 C 1.50696 * 109.47261 * 270.00697 * 10 9 7 12 12 H 1.08004 * 119.99922 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99983 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99750 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99950 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46977 * 59.99767 * 15 13 11 17 17 H 1.48496 * 109.46851 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46985 * 299.99973 * 15 13 11 19 19 C 1.39840 * 120.00029 * 2.97934 * 9 7 6 20 20 C 1.38921 * 120.07525 * 83.63102 * 19 9 7 21 21 C 1.38076 * 119.92725 * 180.29828 * 20 19 9 22 22 C 1.38311 * 120.07616 * 359.44878 * 21 20 19 23 23 C 1.38261 * 120.14243 * 0.27547 * 22 21 20 24 24 C 1.50698 * 119.96509 * 180.02562 * 23 22 21 25 25 C 1.38129 * 120.07503 * 0.02562 * 23 22 21 26 26 S 1.70955 * 124.79986 * 180.24968 * 2 1 3 27 27 H 1.08998 * 109.47083 * 90.02484 * 1 2 3 28 28 H 1.09002 * 109.47219 * 210.02533 * 1 2 3 29 29 H 1.08996 * 109.47192 * 330.02764 * 1 2 3 30 30 H 1.09001 * 109.46803 * 269.97390 * 5 4 3 31 31 H 1.09000 * 109.46833 * 29.97566 * 5 4 3 32 32 H 1.09000 * 109.46909 * 149.97462 * 5 4 3 33 33 H 1.08997 * 109.46540 * 30.00347 * 10 9 7 34 34 H 1.09003 * 109.46743 * 150.00228 * 10 9 7 35 35 H 0.97000 * 119.99959 * 179.97438 * 14 13 11 36 36 H 1.08003 * 120.03331 * 0.04257 * 20 19 9 37 37 H 1.08006 * 119.96555 * 179.72907 * 21 20 19 38 38 H 1.07998 * 119.93174 * 180.25570 * 22 21 20 39 39 H 1.09003 * 109.46870 * 84.96629 * 24 23 22 40 40 H 1.09002 * 109.47524 * 204.96293 * 24 23 22 41 41 H 1.08996 * 109.47039 * 324.97083 * 24 23 22 42 42 H 1.07997 * 120.04132 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5441 0.8933 0.0005 5 6 4.5197 2.0419 0.0012 6 6 3.9351 -0.4060 0.0015 7 6 5.3186 -0.8927 0.0018 8 8 6.2405 -0.1058 -0.1070 9 7 5.5690 -2.2114 0.1225 10 6 6.9515 -2.6916 0.1883 11 6 7.4496 -2.9810 -1.2042 12 1 6.8010 -2.8235 -2.0533 13 6 8.7329 -3.4479 -1.3942 14 7 9.5225 -3.6401 -0.3601 15 14 9.3501 -3.8074 -3.1202 16 1 9.2957 -2.5663 -3.9339 17 1 10.7515 -4.2939 -3.0535 18 1 8.4939 -4.8471 -3.7455 19 6 4.5091 -3.1215 0.1848 20 6 3.9147 -3.5791 -0.9844 21 6 2.8643 -4.4730 -0.9191 22 6 2.4113 -4.9216 0.3082 23 6 3.0043 -4.4726 1.4737 24 6 2.5079 -4.9645 2.8088 25 6 4.0514 -3.5736 1.4156 26 16 2.4827 -1.4038 -0.0061 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5134 30 1 4.7557 2.3187 -1.0264 31 1 4.0762 2.8950 0.5146 32 1 5.4329 1.7427 0.5157 33 1 7.5796 -1.9282 0.6475 34 1 6.9916 -3.6026 0.7853 35 1 10.4252 -3.9689 -0.4937 36 1 4.2711 -3.2329 -1.9434 37 1 2.3989 -4.8258 -1.8277 38 1 1.5923 -5.6240 0.3564 39 1 2.9915 -5.9111 3.0500 40 1 2.7446 -4.2292 3.5779 41 1 1.4284 -5.1091 2.7642 42 1 4.5140 -3.2229 2.3263 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069778363.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:13 Heat of formation + Delta-G solvation = 34.615671 kcal Electronic energy + Delta-G solvation = -26231.673508 eV Core-core repulsion = 22689.522561 eV Total energy + Delta-G solvation = -3542.150947 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.18087 -39.73751 -38.08853 -35.14585 -33.02644 -32.61422 -32.28878 -29.72791 -29.12160 -28.66516 -26.84611 -26.61311 -23.27165 -22.78436 -22.63742 -21.55844 -20.26880 -18.30079 -17.73650 -16.82202 -16.47003 -16.00857 -15.47965 -15.29674 -15.05212 -14.63200 -14.16252 -13.98105 -13.78246 -13.68900 -13.30865 -13.18393 -13.06461 -12.95230 -12.50705 -12.31468 -12.23518 -12.19398 -11.89190 -11.77878 -11.56173 -11.25005 -11.12632 -10.96918 -10.89195 -10.65632 -10.21101 -9.75897 -9.73367 -9.38683 -9.18885 -8.67156 -8.49684 -8.39552 -8.18955 -7.93988 -6.09358 -4.13903 0.52722 1.35510 1.48241 1.57179 1.97853 2.74216 3.29935 3.34201 3.36701 3.63951 3.68812 3.83763 4.16295 4.41234 4.89927 4.94115 5.00486 5.04602 5.25218 5.26809 5.28444 5.31632 5.35214 5.40015 5.55756 5.61454 5.70053 5.72433 5.83466 5.93805 6.01624 6.07395 6.11030 6.20065 6.52645 6.59911 6.65100 6.71882 6.89562 7.10992 7.26745 7.38080 7.85185 7.87090 8.13510 8.23005 8.74011 8.90764 9.50527 10.99168 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.005325 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.780103 B = 5256.998924 C = 6732.751330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.008 3.992 3 N -0.486 5.486 4 C 0.135 3.865 5 C -0.084 4.084 6 C -0.293 4.293 7 C 0.592 3.408 8 O -0.510 6.510 9 N -0.558 5.558 10 C 0.253 3.747 11 C -0.526 4.526 12 H 0.057 0.943 13 C 0.064 3.936 14 N -0.894 5.894 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.276 1.276 19 C 0.145 3.855 20 C -0.103 4.103 21 C -0.110 4.110 22 C -0.119 4.119 23 C -0.083 4.083 24 C -0.111 4.111 25 C -0.109 4.109 26 S 0.205 5.795 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.036 0.964 35 H 0.265 0.735 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.667 -0.306 3.654 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.266 4.266 3 N -0.202 5.202 4 C -0.002 4.002 5 C -0.143 4.143 6 C -0.417 4.417 7 C 0.379 3.621 8 O -0.387 6.387 9 N -0.287 5.287 10 C 0.136 3.864 11 C -0.565 4.565 12 H 0.076 0.924 13 C -0.138 4.138 14 N -0.532 5.532 15 Si 0.726 3.274 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.202 1.202 19 C 0.050 3.950 20 C -0.124 4.124 21 C -0.129 4.129 22 C -0.137 4.137 23 C -0.084 4.084 24 C -0.168 4.168 25 C -0.129 4.129 26 S 0.468 5.532 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.497 -0.479 3.659 19.843 hybrid contribution 1.094 0.352 -1.087 1.582 sum -18.403 -0.126 2.572 18.582 Atomic orbital electron populations 1.20401 0.85719 1.03851 1.03579 1.27841 1.02334 0.94826 1.01566 1.66106 1.04334 1.32279 1.17519 1.20569 0.89982 0.93619 0.96074 1.20572 0.96874 0.93326 1.03497 1.25785 0.98567 0.97240 1.20084 1.16703 0.85580 0.82347 0.77512 1.90778 1.44436 1.54187 1.49315 1.45778 1.08035 1.03610 1.71256 1.19445 0.73460 0.95489 0.98047 1.21297 0.98424 1.44403 0.92377 0.92445 1.24892 0.96351 0.95295 0.97269 1.69912 1.08041 1.45558 1.29722 0.86552 0.77809 0.78706 0.84365 1.20097 1.21088 1.20203 1.17701 0.90047 0.94180 0.93044 1.21505 0.95753 0.96719 0.98471 1.20982 0.96702 0.97296 0.97887 1.20976 1.00513 1.00317 0.91908 1.19697 0.96012 0.97016 0.95641 1.20762 1.00918 1.01461 0.93644 1.21310 0.96620 0.97678 0.97310 1.84889 0.95166 1.07616 1.65550 0.89793 0.90255 0.89699 0.90367 0.91334 0.88440 0.93235 0.94557 0.92559 0.85342 0.85651 0.86032 0.91141 0.91669 0.91589 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.46 36.01 0.38 -0.31 16 2 C 0.01 0.11 7.39 -13.29 -0.10 0.01 16 3 N -0.49 -7.96 10.50 -7.70 -0.08 -8.04 16 4 C 0.14 2.40 6.79 -83.89 -0.57 1.83 16 5 C -0.08 -1.36 9.62 36.01 0.35 -1.01 16 6 C -0.29 -5.45 6.32 -37.10 -0.23 -5.69 16 7 C 0.59 13.08 7.59 -12.86 -0.10 12.98 16 8 O -0.51 -12.73 13.96 5.19 0.07 -12.65 16 9 N -0.56 -12.26 2.48 -116.20 -0.29 -12.55 16 10 C 0.25 6.59 5.13 -5.19 -0.03 6.56 16 11 C -0.53 -14.78 9.39 -34.44 -0.32 -15.11 16 12 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 13 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 14 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 15 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C 0.14 2.63 2.81 -83.71 -0.24 2.39 16 20 C -0.10 -1.68 7.82 -39.39 -0.31 -1.99 16 21 C -0.11 -1.39 9.53 -39.61 -0.38 -1.77 16 22 C -0.12 -1.35 9.72 -39.55 -0.38 -1.73 16 23 C -0.08 -1.03 5.81 -104.65 -0.61 -1.63 16 24 C -0.11 -1.03 10.01 36.00 0.36 -0.67 16 25 C -0.11 -1.69 8.49 -39.38 -0.33 -2.03 16 26 S 0.21 2.98 16.59 -107.50 -1.78 1.20 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.74 6.16 -51.93 -0.32 1.42 16 33 H 0.05 1.43 7.46 -51.93 -0.39 1.04 16 34 H 0.04 0.97 8.05 -51.93 -0.42 0.55 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 37 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.58 8.05 -51.93 -0.42 0.17 16 41 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 42 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 365.05 15.07 5.50 5.50 Total: -1.00 -32.92 365.05 -9.21 -42.13 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.74 Total: -0.38 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -2.61 Total: -6.44 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.37 Total: -46.11 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.07 Total: -12.65 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -1.78 Total: 1.20 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.92 -9.21 -42.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069778363.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.746 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds