Wall clock time and date at job start Tue Mar 31 2020 04:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.28642 * 124.71418 * 2 1 4 4 C 1.33565 * 115.76930 * 179.97438 * 3 2 1 5 5 C 1.47235 * 123.14669 * 179.97438 * 4 3 2 6 6 O 1.21646 * 119.99711 * 175.58256 * 5 4 3 7 7 N 1.34777 * 120.00069 * 355.58087 * 5 4 3 8 8 C 1.46492 * 119.99971 * 5.82551 * 7 5 4 9 9 C 1.50696 * 109.47187 * 276.05631 * 8 7 5 10 10 H 1.08001 * 120.00016 * 0.02562 * 9 8 7 11 11 C 1.37885 * 120.00058 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99977 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99980 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47226 * 90.00264 * 13 11 9 15 15 H 1.48505 * 109.47433 * 209.99983 * 13 11 9 16 16 H 1.48500 * 109.47307 * 330.00626 * 13 11 9 17 17 C 1.39860 * 119.99901 * 185.82504 * 7 5 4 18 18 C 1.38910 * 120.07098 * 172.88170 * 17 7 5 19 19 C 1.38080 * 119.92715 * 179.97438 * 18 17 7 20 20 C 1.38309 * 120.07437 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.93081 * 179.97438 * 20 19 18 22 22 C 1.38271 * 120.14438 * 359.97438 * 20 19 18 23 23 C 1.50688 * 119.96594 * 179.97438 * 22 20 19 24 24 C 1.38134 * 120.06854 * 0.25792 * 22 20 19 25 25 C 1.35228 * 113.70564 * 0.26176 * 4 3 2 26 26 S 1.70766 * 124.72103 * 179.97438 * 2 1 3 27 27 H 1.08992 * 109.47379 * 90.00820 * 1 2 3 28 28 H 1.09007 * 109.46488 * 210.00213 * 1 2 3 29 29 H 1.09000 * 109.47295 * 329.99937 * 1 2 3 30 30 H 1.09005 * 109.47249 * 36.05365 * 8 7 5 31 31 H 1.08999 * 109.46946 * 156.05595 * 8 7 5 32 32 H 0.97000 * 120.00264 * 180.02562 * 12 11 9 33 33 H 1.07995 * 120.03344 * 359.97438 * 18 17 7 34 34 H 1.08001 * 119.96457 * 179.97438 * 19 18 17 35 35 H 1.08997 * 109.46836 * 270.02070 * 21 20 19 36 36 H 1.08997 * 109.46934 * 30.02152 * 21 20 19 37 37 H 1.08995 * 109.47096 * 150.01901 * 21 20 19 38 38 H 1.09008 * 109.47514 * 90.00227 * 23 22 20 39 39 H 1.09005 * 109.47514 * 330.00210 * 23 22 20 40 40 H 1.09005 * 109.47494 * 210.00133 * 23 22 20 41 41 H 1.08001 * 120.03384 * 179.74505 * 24 22 20 42 42 H 1.07998 * 125.58296 * 179.69737 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2397 1.0574 0.0000 4 6 3.5591 0.8498 0.0005 5 6 4.5460 1.9424 0.0001 6 8 5.7331 1.6896 0.0817 7 7 4.1342 3.2224 -0.0909 8 6 2.7034 3.5355 -0.0606 9 6 2.1256 3.3791 -1.4436 10 1 2.7607 3.0764 -2.2631 11 6 0.7861 3.6215 -1.6626 12 7 0.0127 3.9897 -0.6647 13 14 0.0701 3.4284 -3.3771 14 1 -0.4072 2.0341 -3.5600 15 1 -1.0679 4.3673 -3.5470 16 1 1.1159 3.7301 -4.3872 17 6 5.0728 4.2519 -0.2141 18 6 4.6511 5.5531 -0.4560 19 6 5.5803 6.5673 -0.5767 20 6 6.9298 6.2887 -0.4574 21 6 7.9412 7.3980 -0.5902 22 6 7.3530 4.9946 -0.2166 23 6 8.8242 4.6954 -0.0879 24 6 6.4288 3.9746 -0.0997 25 6 3.9036 -0.4579 -0.0047 26 16 2.4797 -1.4036 0.0006 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3632 -0.8901 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 2.1969 2.8549 0.6238 31 1 2.5632 4.5621 0.2778 32 1 -0.9298 4.1599 -0.8186 33 1 3.5975 5.7713 -0.5497 34 1 5.2531 7.5792 -0.7652 35 1 8.2389 7.4950 -1.6342 36 1 7.4999 8.3346 -0.2496 37 1 8.8161 7.1665 0.0172 38 1 9.1253 4.7940 0.9551 39 1 9.3926 5.3976 -0.6980 40 1 9.0194 3.6783 -0.4278 41 1 6.7601 2.9633 0.0843 42 1 4.9130 -0.8417 -0.0098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071900166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:48 Heat of formation + Delta-G solvation = 58.245989 kcal Electronic energy + Delta-G solvation = -26154.358114 eV Core-core repulsion = 22613.231855 eV Total energy + Delta-G solvation = -3541.126259 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.54466 -39.13356 -37.82362 -35.54624 -32.77629 -32.05313 -31.89298 -31.13751 -27.96289 -27.80747 -26.55748 -26.22156 -24.22049 -23.08455 -21.62659 -21.05417 -19.57034 -18.91702 -17.77844 -16.64049 -16.33282 -15.86205 -15.17413 -14.95035 -14.83842 -14.54209 -14.09457 -14.02246 -13.71657 -13.36694 -13.11962 -12.83334 -12.62326 -12.57589 -12.42815 -12.15178 -12.10043 -11.81493 -11.76043 -11.65661 -11.54891 -11.30173 -11.13442 -10.91940 -10.75828 -10.46144 -10.17216 -9.90904 -9.21003 -8.95922 -8.88056 -8.70552 -8.47906 -8.30985 -8.12632 -7.03867 -6.06564 -4.06586 0.90155 1.64958 1.82786 2.00647 2.02151 2.68901 3.23061 3.30949 3.35947 3.68571 3.88834 4.36881 4.46960 4.51344 5.15274 5.26003 5.29298 5.35332 5.47351 5.53165 5.56237 5.63015 5.74042 5.76225 5.80221 5.89172 5.91764 6.04366 6.08346 6.10826 6.23959 6.31649 6.38386 6.47763 6.59870 6.88744 7.01505 7.06484 7.20995 7.34251 7.53639 7.82108 7.88270 8.09407 8.17019 8.18674 8.73973 8.92349 9.53291 11.01366 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.004942 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.369425 B = 5664.018876 C = 7572.404318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.031 3.969 3 N -0.367 5.367 4 C 0.027 3.973 5 C 0.591 3.409 6 O -0.542 6.542 7 N -0.517 5.517 8 C 0.222 3.778 9 C -0.500 4.500 10 H 0.050 0.950 11 C 0.075 3.925 12 N -0.887 5.887 13 Si 0.883 3.117 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.165 3.835 18 C -0.143 4.143 19 C -0.100 4.100 20 C -0.130 4.130 21 C -0.105 4.105 22 C -0.077 4.077 23 C -0.108 4.108 24 C -0.176 4.176 25 C -0.234 4.234 26 S 0.144 5.856 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.261 0.739 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.179 0.821 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.418 -4.637 2.692 8.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.250 4.250 3 N -0.080 5.080 4 C -0.109 4.109 5 C 0.380 3.620 6 O -0.424 6.424 7 N -0.233 5.233 8 C 0.104 3.896 9 C -0.539 4.539 10 H 0.069 0.931 11 C -0.128 4.128 12 N -0.526 5.526 13 Si 0.711 3.289 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.201 1.201 17 C 0.069 3.931 18 C -0.164 4.164 19 C -0.119 4.119 20 C -0.131 4.131 21 C -0.162 4.162 22 C -0.078 4.078 23 C -0.164 4.164 24 C -0.195 4.195 25 C -0.376 4.376 26 S 0.400 5.600 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.156 0.844 34 H 0.135 0.865 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.195 0.805 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.261 -5.288 2.793 8.658 hybrid contribution -0.088 0.773 -1.275 1.493 sum 6.173 -4.515 1.519 7.797 Atomic orbital electron populations 1.20369 0.85240 1.03790 1.03775 1.27419 1.02437 0.90086 1.05029 1.67668 1.01841 1.27606 1.10928 1.20314 0.90671 0.92515 1.07372 1.17274 0.86232 0.82052 0.76455 1.90350 1.16195 1.83496 1.52330 1.45923 1.10369 1.03657 1.63381 1.20214 0.71378 0.98226 0.99765 1.21101 0.93938 1.45520 0.93311 0.93149 1.24674 0.96553 0.95234 0.96294 1.69916 1.05716 1.46627 1.30386 0.86742 0.78873 0.77915 0.85383 1.20734 1.21150 1.20135 1.18065 0.88912 0.88227 0.97866 1.21086 1.01012 0.91150 1.03116 1.20702 0.92057 0.98446 1.00703 1.19617 0.94276 0.94330 1.04846 1.20687 0.97664 0.96428 1.01378 1.19618 0.95457 0.92533 1.00195 1.20725 0.92337 1.01847 1.01510 1.22611 0.90976 1.02846 1.03111 1.26375 1.05066 0.96730 1.09441 1.82538 0.96074 1.14209 1.67137 0.90066 0.91126 0.88335 0.90019 0.94492 0.92940 0.84388 0.86476 0.92094 0.92273 0.92035 0.91784 0.91943 0.91820 0.80455 0.80142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.46 36.01 0.38 -0.68 16 2 C 0.03 0.53 7.34 -13.61 -0.10 0.43 16 3 N -0.37 -7.69 5.70 -8.51 -0.05 -7.74 16 4 C 0.03 0.55 6.43 -84.53 -0.54 0.00 16 5 C 0.59 13.16 7.54 -12.60 -0.10 13.07 16 6 O -0.54 -11.96 13.12 5.24 0.07 -11.89 16 7 N -0.52 -11.91 2.70 -116.00 -0.31 -12.23 16 8 C 0.22 5.48 4.22 -5.20 -0.02 5.46 16 9 C -0.50 -13.09 7.79 -34.44 -0.27 -13.36 16 10 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 11 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 12 N -0.89 -23.59 13.29 55.43 0.74 -22.85 16 13 Si 0.88 20.65 29.54 -169.99 -5.02 15.63 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 17 C 0.17 3.61 6.49 -83.71 -0.54 3.07 16 18 C -0.14 -2.94 9.16 -39.39 -0.36 -3.30 16 19 C -0.10 -1.76 9.69 -39.61 -0.38 -2.14 16 20 C -0.13 -2.12 5.88 -104.58 -0.62 -2.73 16 21 C -0.10 -1.29 9.19 36.01 0.33 -0.96 16 22 C -0.08 -1.33 5.88 -104.65 -0.62 -1.95 16 23 C -0.11 -1.45 9.19 36.00 0.33 -1.12 16 24 C -0.18 -3.55 8.70 -39.39 -0.34 -3.89 16 25 C -0.23 -3.89 10.62 29.66 0.31 -3.58 16 26 S 0.14 1.98 22.92 -107.50 -2.46 -0.48 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.08 2.10 5.58 -51.93 -0.29 1.81 16 31 H 0.04 0.95 6.18 -51.93 -0.32 0.63 16 32 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.14 2.99 6.23 -52.49 -0.33 2.67 16 34 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.06 0.68 6.69 -51.93 -0.35 0.33 16 38 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 39 H 0.06 0.72 6.69 -51.93 -0.35 0.38 16 40 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 41 H 0.18 3.73 4.52 -56.27 -0.25 3.48 16 42 H 0.18 2.66 8.03 -52.49 -0.42 2.24 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -29.19 357.60 -9.52 -38.70 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.23 Total: 5.32 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -2.63 Total: -9.85 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.38 Total: -42.82 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.07 Total: -11.89 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.46 Total: -0.48 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.19 -9.52 -38.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071900166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.947 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds