Wall clock time and date at job start Tue Mar 31 2020 04:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46942 * 2 1 4 4 C 1.52997 * 109.46942 * 240.00212 * 2 1 3 5 5 C 1.50701 * 109.46794 * 119.99901 * 2 1 3 6 6 C 1.38446 * 119.83118 * 60.00370 * 5 2 1 7 7 C 1.37875 * 120.16619 * 179.97438 * 6 5 2 8 8 C 1.39834 * 119.82815 * 0.02562 * 7 6 5 9 9 C 1.47482 * 120.16360 * 179.97438 * 8 7 6 10 10 N 1.30535 * 125.23789 * 359.74569 * 9 8 7 11 11 C 1.31413 * 116.03652 * 179.77542 * 10 9 8 12 12 N 1.38666 * 122.53566 * 180.23713 * 11 10 9 13 13 C 1.34778 * 119.99808 * 355.25102 * 12 11 10 14 14 O 1.21974 * 120.00189 * 5.06566 * 13 12 11 15 15 C 1.40498 * 120.00022 * 185.06370 * 13 12 11 16 16 H 1.08006 * 119.99500 * 359.97438 * 15 13 12 17 17 C 1.40040 * 120.00044 * 180.02562 * 15 13 12 18 18 N 1.30687 * 119.99806 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99925 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.47093 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46911 * 119.99374 * 19 17 15 22 22 H 1.48497 * 109.47245 * 239.99688 * 19 17 15 23 23 C 1.37234 * 114.92931 * 0.50953 * 11 10 9 24 24 S 1.71030 * 108.92232 * 359.72853 * 23 11 10 25 25 C 1.39847 * 119.67411 * 359.97438 * 8 7 6 26 26 C 1.37873 * 119.82684 * 0.02562 * 25 8 7 27 27 H 1.08991 * 109.47319 * 300.00139 * 1 2 3 28 28 H 1.09005 * 109.47207 * 60.00194 * 1 2 3 29 29 H 1.09000 * 109.47257 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47065 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47279 * 299.99920 * 3 2 1 32 32 H 1.09004 * 109.47090 * 60.00007 * 3 2 1 33 33 H 1.09007 * 109.47080 * 299.99649 * 4 2 1 34 34 H 1.08996 * 109.47373 * 60.00023 * 4 2 1 35 35 H 1.09003 * 109.46859 * 180.02562 * 4 2 1 36 36 H 1.07997 * 119.91929 * 359.70063 * 6 5 2 37 37 H 1.07995 * 120.08359 * 179.97438 * 7 6 5 38 38 H 0.96994 * 120.00011 * 175.24388 * 12 11 10 39 39 H 0.97007 * 119.99638 * 180.02562 * 18 17 15 40 40 H 1.08000 * 125.53908 * 179.74142 * 23 11 10 41 41 H 1.08003 * 120.08703 * 180.02562 * 25 8 7 42 42 H 1.07994 * 119.91147 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 1.6957 -2.0359 1.4461 7 6 2.1519 -2.6927 2.5692 8 6 2.9559 -2.0164 3.4920 9 6 3.4474 -2.7116 4.6962 10 7 3.1920 -3.9538 5.0058 11 6 3.7280 -4.3918 6.1228 12 7 3.5486 -5.6895 6.5774 13 6 2.7241 -6.5267 5.9173 14 8 2.2078 -6.1744 4.8699 15 6 2.4592 -7.8054 6.4358 16 1 2.9167 -8.1175 7.3630 17 6 1.6029 -8.6756 5.7497 18 7 1.0498 -8.2980 4.6275 19 14 1.2514 -10.3760 6.4386 20 1 1.9942 -10.5576 7.7117 21 1 -0.2052 -10.5160 6.6918 22 1 1.6852 -11.4058 5.4606 23 6 4.4737 -3.4660 6.8085 24 16 4.4625 -1.9922 5.9409 25 6 3.2916 -0.6776 3.2673 26 6 2.8279 -0.0342 2.1395 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 1.0707 -2.5555 0.7350 37 1 1.8882 -3.7266 2.7363 38 1 4.0165 -5.9947 7.3703 39 1 0.4564 -8.9007 4.1524 40 1 4.9849 -3.6400 7.7438 41 1 3.9126 -0.1489 3.9755 42 1 3.0867 0.9995 1.9645 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072333502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:23 Heat of formation + Delta-G solvation = 28.032513 kcal Electronic energy + Delta-G solvation = -24746.146604 eV Core-core repulsion = 21203.710190 eV Total energy + Delta-G solvation = -3542.436414 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.91269 -39.31313 -37.05321 -36.20589 -33.31157 -32.33002 -31.06995 -30.62455 -28.20925 -27.48796 -27.36762 -26.73149 -24.78929 -22.37614 -22.19620 -20.82178 -19.27185 -18.82199 -17.81344 -17.33379 -16.19417 -15.57216 -15.18688 -15.01857 -14.94571 -14.47167 -14.31267 -14.16444 -13.84213 -13.66554 -13.37372 -12.98831 -12.88976 -12.53232 -12.42785 -12.16026 -11.96788 -11.96184 -11.81682 -11.58219 -11.36788 -11.16524 -11.11748 -11.06705 -10.69345 -10.58947 -10.49530 -10.29266 -9.73978 -9.17244 -9.04792 -8.86885 -8.78743 -8.22019 -7.55543 -6.87697 -6.33647 -4.89120 0.65317 1.58609 1.85887 1.90095 2.37959 3.04160 3.13098 3.17682 3.52533 3.97159 4.05456 4.20316 4.48229 4.51179 4.63850 4.85905 4.92316 5.09631 5.14768 5.21984 5.39861 5.48309 5.50129 5.61478 5.64555 5.71460 5.74368 5.77517 5.80490 5.83338 5.85301 5.93693 6.04843 6.13361 6.17077 6.20023 6.34738 6.61237 6.72938 6.77154 7.11547 7.24238 7.58031 7.98031 8.11111 8.44192 8.81507 9.36703 10.41883 10.67402 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.003093 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.621697 B = 9051.309205 C =10906.329814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.030 4.030 3 C -0.143 4.143 4 C -0.139 4.139 5 C -0.065 4.065 6 C -0.118 4.118 7 C -0.062 4.062 8 C -0.020 4.020 9 C 0.103 3.897 10 N -0.412 5.412 11 C 0.352 3.648 12 N -0.666 5.666 13 C 0.533 3.467 14 O -0.529 6.529 15 C -0.537 4.537 16 H 0.069 0.931 17 C 0.087 3.913 18 N -0.744 5.744 19 Si 0.913 3.087 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.395 4.395 24 S 0.101 5.899 25 C -0.099 4.099 26 C -0.126 4.126 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.125 0.875 37 H 0.146 0.854 38 H 0.399 0.601 39 H 0.272 0.728 40 H 0.168 0.832 41 H 0.123 0.877 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.972 16.918 -6.122 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.066 4.066 6 C -0.136 4.136 7 C -0.083 4.083 8 C -0.024 4.024 9 C -0.172 4.172 10 N -0.128 5.128 11 C 0.120 3.880 12 N -0.311 5.311 13 C 0.341 3.659 14 O -0.408 6.408 15 C -0.572 4.572 16 H 0.087 0.913 17 C -0.136 4.136 18 N -0.371 5.371 19 Si 0.737 3.263 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.540 4.540 24 S 0.354 5.646 25 C -0.120 4.120 26 C -0.144 4.144 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.164 0.836 38 H 0.233 0.767 39 H 0.083 0.917 40 H 0.185 0.815 41 H 0.141 0.859 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.541 17.567 -7.128 19.127 hybrid contribution 0.091 -2.092 1.440 2.541 sum 2.632 15.475 -5.688 16.696 Atomic orbital electron populations 1.21900 0.93655 1.02366 1.01732 1.19509 0.95756 0.94930 0.92806 1.21962 1.01204 0.95053 1.01831 1.21899 1.01302 1.00457 0.95981 1.19948 0.97110 0.93998 0.95532 1.20955 1.00778 0.94073 0.97777 1.21586 0.93723 1.01172 0.91836 1.17931 0.99565 0.92879 0.92049 1.25987 1.00455 0.92123 0.98669 1.66824 1.21204 1.09827 1.14991 1.18133 0.92628 0.88599 0.88617 1.44170 1.48266 1.07600 1.31112 1.16907 0.79049 0.84996 0.84968 1.90795 1.51484 1.75776 1.22748 1.19771 1.29294 0.98707 1.09474 0.91301 1.25733 0.94080 0.99792 0.93957 1.70064 1.20302 1.34980 1.11788 0.86230 0.78773 0.81528 0.79778 1.18599 1.19933 1.19923 1.25807 1.20050 0.97780 1.10384 1.82971 1.50102 1.14274 1.17274 1.21138 0.99905 0.93067 0.97870 1.20925 0.99167 1.00067 0.94211 0.92431 0.92494 0.92168 0.92223 0.92522 0.92222 0.92173 0.92488 0.92442 0.85742 0.83646 0.76732 0.91738 0.81480 0.85932 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.28 37.16 0.31 -0.93 16 2 C -0.03 -0.28 0.85 -155.66 -0.13 -0.41 16 3 C -0.14 -1.10 7.13 37.16 0.26 -0.84 16 4 C -0.14 -1.23 8.29 37.16 0.31 -0.92 16 5 C -0.06 -0.77 4.78 -104.47 -0.50 -1.27 16 6 C -0.12 -1.66 8.69 -39.64 -0.34 -2.00 16 7 C -0.06 -1.08 9.68 -39.12 -0.38 -1.46 16 8 C -0.02 -0.35 5.88 -104.93 -0.62 -0.97 16 9 C 0.10 2.02 7.31 -14.34 -0.10 1.92 16 10 N -0.41 -9.89 8.00 -10.20 -0.08 -9.97 16 11 C 0.35 8.02 7.37 -156.88 -1.16 6.86 16 12 N -0.67 -15.94 5.37 -15.12 -0.08 -16.02 16 13 C 0.53 15.39 7.48 -15.41 -0.12 15.27 16 14 O -0.53 -17.13 13.31 4.94 0.07 -17.07 16 15 C -0.54 -14.92 9.24 -38.06 -0.35 -15.27 16 16 H 0.07 1.73 7.85 -52.48 -0.41 1.32 16 17 C 0.09 2.38 5.49 -17.36 -0.10 2.29 16 18 N -0.74 -21.73 11.70 55.55 0.65 -21.08 16 19 Si 0.91 19.59 29.56 -169.99 -5.02 14.57 16 20 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 C -0.39 -7.21 11.12 30.37 0.34 -6.87 16 24 S 0.10 1.60 22.11 -107.50 -2.38 -0.78 16 25 C -0.10 -1.34 9.61 -39.11 -0.38 -1.72 16 26 C -0.13 -1.47 8.95 -39.64 -0.35 -1.83 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.56 7.37 -51.93 -0.38 0.18 16 30 H 0.06 0.44 7.50 -51.93 -0.39 0.05 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.44 7.50 -51.93 -0.39 0.05 16 33 H 0.06 0.56 7.38 -51.92 -0.38 0.17 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.12 1.57 7.08 -52.49 -0.37 1.20 16 37 H 0.15 3.04 7.81 -52.49 -0.41 2.63 16 38 H 0.40 7.99 8.71 -40.82 -0.36 7.63 16 39 H 0.27 7.13 8.29 -40.82 -0.34 6.80 16 40 H 0.17 2.56 8.06 -52.49 -0.42 2.14 16 41 H 0.12 1.42 7.28 -52.48 -0.38 1.04 16 42 H 0.13 1.16 5.87 -52.49 -0.31 0.85 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -34.41 362.94 -10.14 -44.56 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.45 Total: 8.47 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -3.31 Total: -8.14 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.49 Total: -47.07 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.07 Total: -17.07 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.38 Total: -0.78 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.41 -10.14 -44.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072333502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.588 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds