Wall clock time and date at job start Tue Mar 31 2020 04:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 S 1.71017 * 125.53241 * 2 1 4 4 C 1.75957 * 90.64459 * 179.97438 * 3 2 1 5 5 N 1.37418 * 125.19640 * 179.97438 * 4 3 2 6 6 C 1.34769 * 120.00120 * 0.02625 * 5 4 3 7 7 O 1.21966 * 120.00101 * 359.71988 * 6 5 4 8 8 C 1.40440 * 119.99850 * 179.97438 * 6 5 4 9 9 H 1.07997 * 120.00371 * 359.72905 * 8 6 5 10 10 C 1.40061 * 120.00015 * 179.72268 * 8 6 5 11 11 N 1.30688 * 119.99911 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 120.00305 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47059 * 60.00241 * 12 10 8 14 14 H 1.48495 * 109.47496 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47068 * 300.00247 * 12 10 8 16 16 N 1.30358 * 109.60444 * 0.24285 * 4 3 2 17 17 C 1.31859 * 116.00135 * 359.55556 * 16 4 3 18 18 C 1.47951 * 122.59085 * 180.22274 * 17 16 4 19 19 C 1.39673 * 120.15091 * 43.09022 * 18 17 16 20 20 C 1.37909 * 119.84833 * 179.74210 * 19 18 17 21 21 C 1.38424 * 120.14785 * 0.53251 * 20 19 18 22 22 C 1.50699 * 119.84731 * 179.74024 * 21 20 19 23 23 C 1.52997 * 109.47534 * 299.97881 * 22 21 20 24 24 C 1.53005 * 109.47214 * 59.98115 * 22 21 20 25 25 C 1.38425 * 120.30186 * 359.72167 * 21 20 19 26 26 C 1.37908 * 120.14890 * 0.02562 * 25 21 20 27 27 H 1.08998 * 109.47310 * 354.74735 * 1 2 3 28 28 H 1.08999 * 109.46384 * 114.74730 * 1 2 3 29 29 H 1.09000 * 109.47023 * 234.73914 * 1 2 3 30 30 H 0.97002 * 119.99728 * 180.02562 * 5 4 3 31 31 H 0.96993 * 119.99893 * 180.02562 * 11 10 8 32 32 H 1.08000 * 120.07699 * 0.02562 * 19 18 17 33 33 H 1.08001 * 119.92511 * 180.25810 * 20 19 18 34 34 H 1.08997 * 109.46929 * 179.97438 * 22 21 20 35 35 H 1.08997 * 109.47452 * 179.97438 * 23 22 21 36 36 H 1.08992 * 109.47162 * 300.00408 * 23 22 21 37 37 H 1.09004 * 109.46861 * 60.00302 * 23 22 21 38 38 H 1.09004 * 109.47147 * 59.99908 * 24 22 21 39 39 H 1.09003 * 109.47011 * 179.97438 * 24 22 21 40 40 H 1.08996 * 109.46856 * 300.00219 * 24 22 21 41 41 H 1.08003 * 119.92581 * 179.97438 * 25 21 20 42 42 H 1.07995 * 120.07460 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5009 1.3917 0.0000 4 6 3.9443 0.3853 0.0008 5 7 5.2363 0.8534 0.0006 6 6 5.4723 2.1803 0.0004 7 8 4.5392 2.9656 -0.0049 8 6 6.7927 2.6586 0.0007 9 1 7.6190 1.9632 0.0057 10 6 7.0380 4.0375 -0.0054 11 7 6.0382 4.8791 -0.0110 12 14 8.7943 4.6738 -0.0056 13 1 9.5000 4.1786 -1.2147 14 1 8.7828 6.1587 -0.0121 15 1 9.4962 4.1900 1.2103 16 7 3.6007 -0.8722 -0.0042 17 6 2.3051 -1.1174 0.0006 18 6 1.7539 -2.4905 0.0008 19 6 2.3144 -3.4713 0.8222 20 6 1.7923 -4.7477 0.8214 21 6 0.7223 -5.0607 0.0008 22 6 0.1609 -6.4592 0.0010 23 6 1.2517 -7.4468 -0.4182 24 6 -0.3325 -6.8105 1.4061 25 6 0.1655 -4.0948 -0.8197 26 6 0.6745 -2.8131 -0.8249 27 1 -0.3634 1.0233 0.0941 28 1 -0.3632 -0.4302 -0.9333 29 1 -0.3633 -0.5933 0.8391 30 1 5.9784 0.2287 0.0007 31 1 6.2081 5.8340 -0.0156 32 1 3.1518 -3.2294 1.4600 33 1 2.2220 -5.5060 1.4592 34 1 -0.6708 -6.5169 -0.7010 35 1 0.8457 -8.4583 -0.4176 36 1 1.6032 -7.1965 -1.4190 37 1 2.0834 -7.3891 0.2840 38 1 -1.1097 -6.1070 1.7048 39 1 -0.7390 -7.8219 1.4061 40 1 0.4992 -6.7527 2.1082 41 1 -0.6689 -4.3458 -1.4578 42 1 0.2394 -2.0606 -1.4658 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072333513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:12 Heat of formation + Delta-G solvation = 6.375457 kcal Electronic energy + Delta-G solvation = -24434.136544 eV Core-core repulsion = 20890.761009 eV Total energy + Delta-G solvation = -3543.375534 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.81327 -38.81489 -37.81936 -35.40176 -33.79895 -32.70581 -31.68394 -30.77375 -29.63776 -27.51093 -27.33387 -25.58952 -23.67138 -22.75970 -22.42896 -20.73524 -19.99892 -19.30885 -17.79338 -16.61605 -16.27953 -15.86841 -15.49834 -15.24712 -15.08655 -14.44778 -14.24087 -13.95999 -13.82937 -13.68567 -13.38776 -13.00305 -12.94327 -12.56606 -12.52704 -12.38992 -12.25743 -12.07337 -11.87442 -11.59105 -11.33803 -11.30457 -11.19475 -10.94918 -10.86448 -10.69748 -10.55828 -10.20125 -9.70941 -9.13753 -8.99334 -8.80270 -8.67607 -8.21342 -8.05645 -6.91274 -6.63205 -5.18537 1.14459 1.55839 1.77052 2.02998 2.83303 2.95616 3.02248 3.04231 3.36796 3.77021 3.95418 4.17526 4.24334 4.55125 4.66716 5.01027 5.02322 5.09540 5.14941 5.28066 5.41652 5.42739 5.50761 5.52618 5.55604 5.61414 5.62918 5.76066 5.78011 5.85434 5.95896 6.03838 6.06321 6.13746 6.21411 6.28850 6.44161 6.68984 6.77034 6.80615 7.01150 7.11558 7.49434 7.56890 7.74525 8.43417 8.54362 8.95883 10.02616 10.24699 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.025894 B = 0.002458 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.071901 B =11390.388162 C =12212.147150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.351 4.351 3 S 0.261 5.739 4 C 0.292 3.708 5 N -0.635 5.635 6 C 0.529 3.471 7 O -0.551 6.551 8 C -0.520 4.520 9 H 0.077 0.923 10 C 0.086 3.914 11 N -0.735 5.735 12 Si 0.920 3.080 13 H -0.263 1.263 14 H -0.276 1.276 15 H -0.263 1.263 16 N -0.534 5.534 17 C 0.112 3.888 18 C 0.003 3.997 19 C -0.091 4.091 20 C -0.117 4.117 21 C -0.085 4.085 22 C -0.055 4.055 23 C -0.144 4.144 24 C -0.144 4.144 25 C -0.120 4.120 26 C -0.104 4.104 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.406 0.594 31 H 0.279 0.721 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.119 0.881 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.731 -16.102 0.346 18.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.476 4.476 3 S 0.514 5.486 4 C -0.076 4.076 5 N -0.283 5.283 6 C 0.341 3.659 7 O -0.436 6.436 8 C -0.555 4.555 9 H 0.095 0.905 10 C -0.139 4.139 11 N -0.361 5.361 12 Si 0.744 3.256 13 H -0.188 1.188 14 H -0.201 1.201 15 H -0.188 1.188 16 N -0.258 5.258 17 C -0.024 4.024 18 C 0.000 4.000 19 C -0.110 4.110 20 C -0.135 4.135 21 C -0.085 4.085 22 C -0.074 4.074 23 C -0.201 4.201 24 C -0.201 4.201 25 C -0.138 4.138 26 C -0.123 4.123 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.242 0.758 31 H 0.090 0.910 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.137 0.863 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.053 -14.501 0.339 17.648 hybrid contribution 1.107 -0.937 -0.012 1.451 sum -8.946 -15.438 0.327 17.846 Atomic orbital electron populations 1.19984 0.88178 1.01666 1.01501 1.26312 1.02221 1.00278 1.18764 1.85095 0.92799 1.02750 1.67921 1.24309 0.93431 0.90720 0.99168 1.43501 1.01928 1.10399 1.72496 1.16989 0.91868 0.77608 0.79446 1.90629 1.44570 1.52009 1.56408 1.19663 0.91545 0.92807 1.51490 0.90485 1.25801 0.99296 0.96504 0.92337 1.69996 1.32529 1.03564 1.30034 0.86195 0.81437 0.78025 0.79965 1.18793 1.20109 1.18798 1.66768 1.16337 1.16125 1.26533 1.18453 0.86916 0.92403 1.04626 1.18181 0.94901 0.90520 0.96365 1.21258 0.99066 0.92260 0.98397 1.20836 0.96783 0.96266 0.99627 1.19865 0.96479 0.95043 0.97117 1.20100 0.97868 0.91533 0.97851 1.21858 0.98431 0.98136 1.01713 1.21858 1.01319 1.00984 0.95934 1.20875 1.00392 0.92826 0.99714 1.21256 0.96199 0.96416 0.98463 0.92184 0.91836 0.91827 0.75783 0.91039 0.85853 0.86377 0.90701 0.92629 0.92511 0.92418 0.92545 0.92630 0.92431 0.86311 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.77 9.01 36.01 0.32 -0.45 16 2 C -0.35 -6.44 6.38 -34.64 -0.22 -6.66 16 3 S 0.26 5.55 20.19 -107.50 -2.17 3.38 16 4 C 0.29 6.55 8.32 -88.28 -0.73 5.82 16 5 N -0.64 -14.53 5.33 -15.00 -0.08 -14.61 16 6 C 0.53 13.97 7.48 -15.43 -0.12 13.85 16 7 O -0.55 -15.93 12.29 4.95 0.06 -15.87 16 8 C -0.52 -13.31 9.24 -38.07 -0.35 -13.66 16 9 H 0.08 1.77 7.85 -52.49 -0.41 1.36 16 10 C 0.09 2.15 5.49 -17.36 -0.10 2.06 16 11 N -0.73 -19.78 11.70 55.55 0.65 -19.13 16 12 Si 0.92 18.19 29.56 -169.99 -5.02 13.17 16 13 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 14 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 15 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 16 N -0.53 -11.30 10.58 -10.29 -0.11 -11.41 16 17 C 0.11 2.14 6.30 -84.21 -0.53 1.61 16 18 C 0.00 0.05 5.60 -104.84 -0.59 -0.54 16 19 C -0.09 -1.36 9.73 -39.17 -0.38 -1.75 16 20 C -0.12 -1.45 8.69 -39.63 -0.34 -1.79 16 21 C -0.08 -0.96 4.79 -104.48 -0.50 -1.46 16 22 C -0.06 -0.48 3.09 -91.77 -0.28 -0.76 16 23 C -0.14 -1.16 9.01 37.16 0.33 -0.82 16 24 C -0.14 -1.12 9.01 37.16 0.33 -0.78 16 25 C -0.12 -1.41 9.65 -39.63 -0.38 -1.79 16 26 C -0.10 -1.44 8.73 -39.16 -0.34 -1.79 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.79 6.30 -51.93 -0.33 0.47 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.41 8.19 8.77 -40.82 -0.36 7.83 16 31 H 0.28 6.75 8.29 -40.82 -0.34 6.41 16 32 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.12 1.23 7.08 -52.49 -0.37 0.86 16 34 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.47 7.38 -51.93 -0.38 0.09 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.45 7.37 -51.93 -0.38 0.07 16 41 H 0.12 1.11 7.94 -52.48 -0.42 0.70 16 42 H 0.12 1.61 6.01 -52.49 -0.32 1.29 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -30.18 363.23 -10.54 -40.73 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.47 Total: 7.19 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -3.88 Total: -8.91 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.46 Total: -45.15 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.06 Total: -15.87 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.02 Total: 13.17 kcal Atomic # 16 Polarization: 5.55 SS G_CDS: -2.17 Total: 3.38 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.18 -10.54 -40.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072333513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.103 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds