Wall clock time and date at job start Tue Mar 31 2020 05:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 119.99941 * 2 1 4 4 C 1.39709 * 119.99974 * 180.02562 * 2 1 3 5 5 C 1.39022 * 120.00318 * 185.64867 * 4 2 1 6 6 C 1.38204 * 120.21909 * 179.97438 * 5 4 2 7 7 C 1.38027 * 120.22771 * 359.72472 * 6 5 4 8 8 C 1.39578 * 120.00172 * 0.55335 * 7 6 5 9 9 C 1.47868 * 120.10890 * 179.71952 * 8 7 6 10 10 O 1.21553 * 120.00055 * 207.98868 * 9 8 7 11 11 N 1.34777 * 119.99710 * 27.98708 * 9 8 7 12 12 C 1.46500 * 120.00176 * 3.32846 * 11 9 8 13 13 C 1.50700 * 109.46935 * 253.80755 * 12 11 9 14 14 H 1.08004 * 120.00137 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99709 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99734 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 120.00365 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47202 * 89.99496 * 17 15 13 19 19 H 1.48494 * 109.47435 * 209.99886 * 17 15 13 20 20 H 1.48503 * 109.46841 * 330.00046 * 17 15 13 21 21 C 1.46501 * 119.99785 * 183.32596 * 11 9 8 22 22 C 1.52995 * 109.47490 * 273.50454 * 21 11 9 23 23 F 1.39897 * 109.47190 * 59.99922 * 22 21 11 24 24 F 1.39896 * 109.47329 * 179.97438 * 22 21 11 25 25 F 1.39899 * 109.46891 * 300.00215 * 22 21 11 26 26 C 1.38638 * 120.00599 * 5.63317 * 4 2 1 27 27 H 1.08999 * 109.46889 * 184.59914 * 1 2 3 28 28 H 1.08998 * 109.46637 * 304.60040 * 1 2 3 29 29 H 1.08995 * 109.47247 * 64.60148 * 1 2 3 30 30 H 1.09003 * 109.47093 * 269.99653 * 3 2 1 31 31 H 1.08992 * 109.47390 * 30.00283 * 3 2 1 32 32 H 1.09004 * 109.47008 * 150.00672 * 3 2 1 33 33 H 1.07999 * 119.89559 * 359.96124 * 5 4 2 34 34 H 1.07999 * 119.89118 * 180.02562 * 6 5 4 35 35 H 1.08006 * 120.00282 * 180.30036 * 7 6 5 36 36 H 1.09002 * 109.46803 * 133.81050 * 12 11 9 37 37 H 1.08997 * 109.47106 * 13.80942 * 12 11 9 38 38 H 0.97005 * 120.00057 * 180.02562 * 16 15 13 39 39 H 1.09007 * 109.46916 * 33.50681 * 21 11 9 40 40 H 1.09002 * 109.46983 * 153.50091 * 21 11 9 41 41 H 1.08004 * 120.11171 * 0.03583 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1636 -1.2099 -0.0005 5 6 3.5487 -1.2130 0.1180 6 6 4.2442 -2.4073 0.1185 7 6 3.5678 -3.6053 0.0070 8 6 2.1777 -3.6129 -0.1183 9 6 1.4512 -4.8947 -0.2440 10 8 0.3915 -4.9369 -0.8379 11 7 1.9642 -6.0161 0.2998 12 6 3.2040 -5.9522 1.0775 13 6 4.3334 -6.5406 0.2717 14 1 4.1464 -6.9234 -0.7207 15 6 5.6057 -6.5891 0.8010 16 7 6.5914 -7.1021 0.0976 17 14 5.9292 -5.9263 2.5172 18 1 5.7423 -7.0137 3.5112 19 1 7.3218 -5.4170 2.5967 20 1 4.9806 -4.8214 2.8081 21 6 1.2819 -7.2990 0.1131 22 6 0.2183 -7.4738 1.1989 23 9 -0.7129 -6.4334 1.1113 24 9 -0.4336 -8.6986 1.0202 25 9 0.8284 -7.4489 2.4576 26 6 1.4755 -2.4077 -0.1189 27 1 -0.3633 -1.0244 0.0824 28 1 -0.3632 0.5836 0.8459 29 1 -0.3633 0.4408 -0.9283 30 1 2.3792 1.5834 -1.0277 31 1 1.6085 2.0283 0.5138 32 1 3.1500 1.1383 0.5138 33 1 4.0832 -0.2790 0.2097 34 1 5.3201 -2.4035 0.2112 35 1 4.1145 -4.5367 0.0127 36 1 3.0832 -6.5185 2.0011 37 1 3.4304 -4.9129 1.3156 38 1 7.4864 -7.1367 0.4701 39 1 0.8066 -7.3184 -0.8677 40 1 2.0074 -8.1097 0.1813 41 1 0.3994 -2.4076 -0.2114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078968347.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:48 Heat of formation + Delta-G solvation = -121.372480 kcal Electronic energy + Delta-G solvation = -29509.574132 eV Core-core repulsion = 24976.049420 eV Total energy + Delta-G solvation = -4533.524712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.67439 -47.23297 -47.11412 -40.10670 -38.59673 -36.00375 -35.45890 -32.83271 -31.29096 -30.42323 -28.97696 -28.30547 -27.58922 -24.62417 -23.79108 -22.86827 -21.92495 -20.90893 -19.26300 -18.13982 -18.12170 -17.58238 -17.08444 -16.64224 -16.24907 -15.78149 -15.18477 -15.06702 -14.91582 -14.48350 -14.14703 -14.07302 -13.95363 -13.73538 -13.61438 -13.35920 -13.32031 -13.30964 -13.22941 -12.69823 -12.59563 -12.48630 -12.23501 -12.09091 -11.96645 -11.84793 -11.68849 -11.24254 -10.95358 -10.77155 -10.41965 -10.18422 -9.83440 -9.57170 -9.26619 -8.86229 -8.58879 -8.15108 -7.04911 -6.37999 -4.42100 1.35422 1.94774 2.96082 3.11907 3.17105 3.20487 3.23769 3.34717 3.50044 4.15108 4.21642 4.35821 4.45769 4.66927 4.90040 4.92467 4.96436 5.11626 5.22982 5.32675 5.40849 5.52425 5.57446 5.60406 5.67389 5.75469 5.86176 5.94355 6.07798 6.19889 6.25297 6.44895 6.62674 6.88941 7.00200 7.00900 7.18776 7.28569 7.33515 7.66843 7.78611 8.20901 8.58103 8.68804 9.18826 10.72754 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.009302 B = 0.005749 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.340292 B = 4869.298428 C = 7163.221416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.644 5.644 3 C 0.098 3.902 4 C 0.187 3.813 5 C -0.174 4.174 6 C -0.091 4.091 7 C -0.146 4.146 8 C -0.090 4.090 9 C 0.563 3.437 10 O -0.546 6.546 11 N -0.583 5.583 12 C 0.178 3.822 13 C -0.550 4.550 14 H 0.085 0.915 15 C 0.085 3.915 16 N -0.878 5.878 17 Si 0.861 3.139 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.257 1.257 21 C 0.084 3.916 22 C 0.430 3.570 23 F -0.178 7.178 24 F -0.189 7.189 25 F -0.183 7.183 26 C -0.142 4.142 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.190 0.810 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.270 0.730 39 H 0.117 0.883 40 H 0.132 0.868 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.774 10.070 2.042 12.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.359 5.359 3 C -0.045 4.045 4 C 0.088 3.912 5 C -0.196 4.196 6 C -0.110 4.110 7 C -0.164 4.164 8 C -0.093 4.093 9 C 0.353 3.647 10 O -0.425 6.425 11 N -0.312 5.312 12 C 0.058 3.942 13 C -0.588 4.588 14 H 0.103 0.897 15 C -0.121 4.121 16 N -0.513 5.513 17 Si 0.686 3.314 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.181 1.181 21 C -0.042 4.042 22 C 0.375 3.625 23 F -0.159 7.159 24 F -0.170 7.170 25 F -0.165 7.165 26 C -0.165 4.165 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.206 0.794 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.135 0.865 40 H 0.150 0.850 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.221 10.165 1.761 13.191 hybrid contribution 0.201 0.258 1.132 1.178 sum -8.020 10.422 2.893 13.465 Atomic orbital electron populations 1.21643 0.79836 1.03195 1.00461 1.46132 1.04692 1.02862 1.82194 1.21533 0.97161 0.85005 1.00829 1.17561 0.91204 0.85377 0.97036 1.20851 0.92119 0.98752 1.07914 1.20964 0.99830 0.91582 0.98580 1.23009 0.93778 1.02183 0.97468 1.19525 0.94178 0.92020 1.03575 1.18472 0.84163 0.83933 0.78155 1.90716 1.22392 1.86260 1.43114 1.47649 1.26038 1.04883 1.52672 1.20798 0.81203 1.00491 0.91673 1.21242 0.91512 1.42009 1.04003 0.89713 1.24851 0.95846 0.94089 0.97291 1.69877 1.01174 1.42884 1.37383 0.87054 0.78676 0.80613 0.85032 1.19544 1.20495 1.18079 1.22445 0.94324 0.90692 0.96772 1.21575 0.83414 0.73462 0.84093 1.93208 1.68062 1.58410 1.96239 1.93142 1.83210 1.45321 1.95366 1.93170 1.82834 1.96120 1.44349 1.20660 0.99785 0.89924 1.06097 0.90273 0.93038 0.93333 0.93777 0.92002 0.91420 0.86244 0.85708 0.79382 0.95069 0.91234 0.91966 0.86508 0.84978 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 10.60 59.85 0.63 1.60 16 2 N -0.64 -8.08 3.41 -187.59 -0.64 -8.72 16 3 C 0.10 0.92 10.35 59.85 0.62 1.54 16 4 C 0.19 2.89 6.53 -83.83 -0.55 2.34 16 5 C -0.17 -2.60 9.25 -39.30 -0.36 -2.96 16 6 C -0.09 -1.52 10.02 -39.67 -0.40 -1.92 16 7 C -0.15 -2.82 7.41 -39.16 -0.29 -3.11 16 8 C -0.09 -1.74 5.49 -104.99 -0.58 -2.32 16 9 C 0.56 11.63 7.06 -12.32 -0.09 11.54 16 10 O -0.55 -11.91 15.22 5.32 0.08 -11.82 16 11 N -0.58 -11.69 2.43 -176.16 -0.43 -12.12 16 12 C 0.18 3.80 3.63 -5.19 -0.02 3.78 16 13 C -0.55 -13.29 7.58 -34.44 -0.26 -13.55 16 14 H 0.08 2.26 8.06 -52.48 -0.42 1.83 16 15 C 0.09 2.14 5.44 -17.82 -0.10 2.04 16 16 N -0.88 -23.70 13.96 55.43 0.77 -22.93 16 17 Si 0.86 18.71 27.47 -169.99 -4.67 14.04 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.26 -5.31 6.54 56.52 0.37 -4.94 16 21 C 0.08 1.47 5.35 -4.04 -0.02 1.45 16 22 C 0.43 7.39 3.29 37.16 0.12 7.51 16 23 F -0.18 -3.32 15.71 2.25 0.04 -3.28 16 24 F -0.19 -2.99 17.32 2.25 0.04 -2.95 16 25 F -0.18 -3.29 16.39 2.25 0.04 -3.26 16 26 C -0.14 -2.46 8.81 -38.97 -0.34 -2.80 16 27 H 0.08 0.91 5.38 -51.93 -0.28 0.63 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 32 H 0.07 0.61 5.99 -51.93 -0.31 0.29 16 33 H 0.12 1.45 6.02 -52.49 -0.32 1.14 16 34 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.19 4.07 3.42 -52.48 -0.18 3.89 16 36 H 0.03 0.67 6.80 -51.93 -0.35 0.31 16 37 H 0.07 1.49 3.29 -51.93 -0.17 1.32 16 38 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.12 1.92 7.58 -51.92 -0.39 1.53 16 40 H 0.13 2.18 7.85 -51.93 -0.41 1.77 16 41 H 0.13 2.14 5.66 -52.48 -0.30 1.84 16 LS Contribution 342.38 15.07 5.16 5.16 Total: -1.00 -28.57 342.38 -5.65 -34.22 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.41 Total: 6.52 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -1.63 Total: 5.14 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: -0.29 Total: -43.77 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 9 Polarization: -9.60 SS G_CDS: 0.11 Total: -9.49 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -4.67 Total: 14.04 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.57 -5.65 -34.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078968347.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.154 kcal (2) G-P(sol) polarization free energy of solvation -28.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds