Wall clock time and date at job start Tue Mar 31 2020 05:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47512 * 2 1 4 4 N 1.46500 * 109.46966 * 240.00383 * 2 1 3 5 5 S 1.65606 * 120.00055 * 95.00305 * 4 2 1 6 6 O 1.42105 * 106.40008 * 311.45637 * 5 4 2 7 7 O 1.42098 * 106.40370 * 178.53822 * 5 4 2 8 8 C 1.76193 * 107.21910 * 64.99793 * 5 4 2 9 9 C 1.39872 * 126.04322 * 90.02410 * 8 5 4 10 10 N 1.30837 * 108.20403 * 179.97438 * 9 8 5 11 11 N 1.40083 * 108.20371 * 0.02562 * 10 9 8 12 12 C 1.46507 * 126.03475 * 179.97438 * 11 10 9 13 13 C 1.34945 * 107.92569 * 359.75355 * 11 10 9 14 14 C 1.50699 * 109.47120 * 120.00933 * 2 1 3 15 15 O 1.21278 * 120.00392 * 120.00199 * 14 2 1 16 16 N 1.34782 * 119.99622 * 299.99414 * 14 2 1 17 17 C 1.46505 * 119.99824 * 0.02562 * 16 14 2 18 18 C 1.46493 * 120.00012 * 180.02562 * 16 14 2 19 19 C 1.50705 * 109.46879 * 90.00227 * 18 16 14 20 20 H 1.07997 * 120.00319 * 359.97438 * 19 18 16 21 21 C 1.37883 * 119.99937 * 180.02562 * 19 18 16 22 22 N 1.31515 * 119.99685 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99939 * 180.02562 * 21 19 18 24 24 H 1.48489 * 109.47153 * 59.99987 * 23 21 19 25 25 H 1.48504 * 109.46703 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46755 * 299.99476 * 23 21 19 27 27 H 1.08994 * 109.47421 * 299.99717 * 1 2 3 28 28 H 1.09010 * 109.47442 * 59.99569 * 1 2 3 29 29 H 1.09003 * 109.47507 * 179.97438 * 1 2 3 30 30 H 0.97002 * 120.00335 * 275.00344 * 4 2 1 31 31 H 1.07997 * 125.89482 * 359.96259 * 9 8 5 32 32 H 1.09004 * 109.46875 * 90.01950 * 12 11 10 33 33 H 1.08995 * 109.46942 * 210.02145 * 12 11 10 34 34 H 1.09004 * 109.46897 * 330.02722 * 12 11 10 35 35 H 1.08004 * 126.12454 * 180.23909 * 13 11 10 36 36 H 1.08997 * 109.47352 * 89.99767 * 17 16 14 37 37 H 1.08997 * 109.46728 * 209.99954 * 17 16 14 38 38 H 1.09000 * 109.47178 * 329.99434 * 17 16 14 39 39 H 1.08997 * 109.47583 * 210.00368 * 18 16 14 40 40 H 1.08994 * 109.47337 * 330.00564 * 18 16 14 41 41 H 0.97006 * 119.99409 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 -1.1962 5 16 2.4121 0.1774 -2.5505 6 8 1.3246 1.0595 -2.7922 7 8 2.8776 -0.7632 -3.5086 8 6 3.7927 1.1911 -2.1371 9 6 5.1402 0.8400 -2.2687 10 7 5.8671 1.8490 -1.8619 11 7 5.0037 2.8754 -1.4576 12 6 5.4055 4.1830 -0.9330 13 6 3.7367 2.4488 -1.6411 14 6 2.0322 -0.7106 1.2303 15 8 2.7295 -1.6966 1.1190 16 7 1.7067 -0.2502 2.4545 17 6 0.8640 0.9407 2.5890 18 6 2.1954 -0.9406 3.6506 19 6 3.5228 -0.3565 4.0605 20 1 3.9590 0.4481 3.4872 21 6 4.1810 -0.8502 5.1670 22 7 3.6506 -1.8310 5.8642 23 14 5.8261 -0.1258 5.6755 24 1 5.6599 1.3197 5.9722 25 1 6.3221 -0.8266 6.8872 26 1 6.8041 -0.2953 4.5710 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 2.1108 -1.6561 -1.1951 31 1 5.5158 -0.1015 -2.6414 32 1 5.5107 4.8884 -1.7574 33 1 4.6465 4.5451 -0.2396 34 1 6.3583 4.0883 -0.4121 35 1 2.8388 3.0098 -1.4280 36 1 -0.1838 0.6425 2.6225 37 1 1.1218 1.4662 3.5085 38 1 1.0273 1.5995 1.7361 39 1 1.4776 -0.8155 4.4612 40 1 2.3169 -2.0017 3.4335 41 1 4.1136 -2.1780 6.6429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087188921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:47 Heat of formation + Delta-G solvation = -18.490681 kcal Electronic energy + Delta-G solvation = -27169.859647 eV Core-core repulsion = 23214.556573 eV Total energy + Delta-G solvation = -3955.303074 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.45011 -39.48743 -37.14979 -35.79693 -35.37878 -34.95726 -33.64378 -32.69802 -30.69602 -30.01728 -27.61180 -27.28397 -26.22131 -24.13627 -22.29353 -22.16166 -21.52469 -19.55200 -18.96624 -18.17184 -17.57522 -16.61528 -16.42129 -15.94746 -15.86209 -15.67839 -15.27427 -14.78370 -14.65355 -14.57443 -13.82783 -13.73245 -13.43166 -13.16076 -13.05320 -13.01876 -12.46191 -12.28375 -12.15967 -12.09554 -12.07707 -11.96087 -11.79750 -11.57895 -11.35455 -11.17052 -10.97429 -10.81373 -10.64047 -10.23777 -9.82776 -9.79972 -9.72650 -9.41189 -8.91091 -8.50318 -7.76680 -6.11513 -4.16596 0.49813 1.34691 2.13554 2.19317 3.07672 3.22786 3.25294 3.30725 3.34086 3.78932 3.88052 4.05962 4.34701 4.37728 4.52708 4.72449 4.78025 4.85471 4.95537 5.07666 5.15376 5.21328 5.23980 5.29695 5.39775 5.55645 5.75156 5.80183 5.95924 6.09731 6.19696 6.25524 6.50962 6.94371 7.06074 7.22896 7.35426 7.42087 7.83984 8.14712 8.27344 8.79264 8.94519 9.48475 10.96531 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.004573 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.872339 B = 6121.639942 C = 7460.326360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.138 3.862 3 H 0.097 0.903 4 N -1.095 6.095 5 S 2.731 3.269 6 O -0.964 6.964 7 O -0.961 6.961 8 C -0.817 4.817 9 C 0.140 3.860 10 N -0.292 5.292 11 N -0.360 5.360 12 C 0.090 3.910 13 C 0.174 3.826 14 C 0.501 3.499 15 O -0.529 6.529 16 N -0.598 5.598 17 C 0.077 3.923 18 C 0.246 3.754 19 C -0.529 4.529 20 H 0.055 0.945 21 C 0.063 3.937 22 N -0.893 5.893 23 Si 0.897 3.103 24 H -0.277 1.277 25 H -0.285 1.285 26 H -0.277 1.277 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.426 0.574 31 H 0.199 0.801 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.192 0.808 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.034 0.966 40 H 0.045 0.955 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.812 12.184 -13.501 18.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.026 3.974 3 H 0.114 0.886 4 N -0.856 5.856 5 S 2.818 3.182 6 O -0.954 6.954 7 O -0.951 6.951 8 C -0.916 4.916 9 C -0.050 4.050 10 N -0.111 5.111 11 N -0.137 5.137 12 C -0.051 4.051 13 C 0.020 3.980 14 C 0.285 3.715 15 O -0.406 6.406 16 N -0.330 5.330 17 C -0.067 4.067 18 C 0.127 3.873 19 C -0.567 4.567 20 H 0.073 0.927 21 C -0.140 4.140 22 N -0.531 5.531 23 Si 0.725 3.275 24 H -0.203 1.203 25 H -0.210 1.210 26 H -0.202 1.202 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.264 0.736 31 H 0.216 0.784 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.209 0.791 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.532 12.325 -13.895 18.906 hybrid contribution 0.831 0.119 0.912 1.240 sum -2.701 12.444 -12.983 18.185 Atomic orbital electron populations 1.22531 0.92905 1.04045 1.04345 1.20580 0.95841 0.95890 0.85093 0.88568 1.55334 1.81312 1.20259 1.28702 1.00717 0.72862 0.72731 0.71922 1.93561 1.51200 1.66850 1.83767 1.93572 1.82262 1.61682 1.57554 1.31661 1.17217 1.11475 1.31245 1.23550 0.89202 0.98068 0.94180 1.77469 1.16730 0.96924 1.19939 1.49103 1.04115 1.13724 1.46743 1.22097 1.03862 0.79113 0.99998 1.22488 0.89951 0.93469 0.92123 1.20288 0.81309 0.85557 0.84394 1.90675 1.37449 1.26559 1.85873 1.48114 1.49501 1.28226 1.07176 1.21864 0.94136 0.88106 1.02575 1.19315 0.94218 0.93766 0.80018 1.21351 1.04906 1.19184 1.11300 0.92695 1.24921 0.97865 0.94925 0.96265 1.69915 1.39044 1.25842 1.18340 0.86580 0.83964 0.78995 0.77995 1.20312 1.21045 1.20248 0.89787 0.90272 0.91383 0.73643 0.78438 0.89990 0.88631 0.88504 0.79066 0.92885 0.90618 0.92375 0.94790 0.93712 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 9.15 37.15 0.34 -1.68 16 2 C 0.14 1.90 2.38 -69.09 -0.16 1.73 16 3 H 0.10 1.10 6.88 -51.93 -0.36 0.75 16 4 N -1.10 -14.81 5.26 -5.89 -0.03 -14.84 16 5 S 2.73 35.47 5.79 -107.50 -0.62 34.85 16 6 O -0.96 -13.12 17.10 -57.17 -0.98 -14.10 16 7 O -0.96 -14.82 17.87 -57.17 -1.02 -15.85 16 8 C -0.82 -10.47 6.00 -40.01 -0.24 -10.71 16 9 C 0.14 1.92 11.81 -17.36 -0.21 1.72 16 10 N -0.29 -4.19 12.58 30.62 0.39 -3.80 16 11 N -0.36 -4.14 4.01 -68.16 -0.27 -4.41 16 12 C 0.09 0.61 11.47 59.85 0.69 1.30 16 13 C 0.17 1.89 11.00 -17.23 -0.19 1.70 16 14 C 0.50 9.61 7.14 -10.98 -0.08 9.53 16 15 O -0.53 -12.45 15.57 5.56 0.09 -12.37 16 16 N -0.60 -11.68 2.86 -182.96 -0.52 -12.20 16 17 C 0.08 1.07 8.80 59.85 0.53 1.59 16 18 C 0.25 6.14 5.16 -5.19 -0.03 6.12 16 19 C -0.53 -14.50 9.39 -34.44 -0.32 -14.83 16 20 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 23 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H 0.08 0.82 4.53 -51.93 -0.24 0.59 16 28 H 0.08 0.81 7.64 -51.92 -0.40 0.42 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.43 5.85 8.21 -34.47 -0.28 5.57 16 31 H 0.20 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.19 1.30 8.06 -52.48 -0.42 0.88 16 36 H 0.05 0.61 6.95 -51.93 -0.36 0.25 16 37 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 38 H 0.06 0.62 6.01 -51.93 -0.31 0.30 16 39 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 40 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 361.55 15.07 5.45 5.45 Total: -1.00 -38.49 361.55 -6.84 -45.33 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.25 Total: 2.59 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 0.23 Total: -1.87 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.29 Total: -60.49 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -1.91 Total: -42.31 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 35.47 SS G_CDS: -0.62 Total: 34.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.49 -6.84 -45.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087188921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.837 kcal (2) G-P(sol) polarization free energy of solvation -38.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds