Wall clock time and date at job start Tue Mar 31 2020 05:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47512 * 2 1 4 4 N 1.46500 * 109.46966 * 240.00383 * 2 1 3 5 5 S 1.65606 * 120.00055 * 95.00305 * 4 2 1 6 6 O 1.42105 * 106.40008 * 311.45637 * 5 4 2 7 7 O 1.42098 * 106.40370 * 178.53822 * 5 4 2 8 8 C 1.76193 * 107.21910 * 64.99793 * 5 4 2 9 9 C 1.39872 * 126.04322 * 90.02410 * 8 5 4 10 10 N 1.30837 * 108.20403 * 179.97438 * 9 8 5 11 11 N 1.40083 * 108.20371 * 0.02562 * 10 9 8 12 12 C 1.46507 * 126.03475 * 179.97438 * 11 10 9 13 13 C 1.34945 * 107.92569 * 359.75355 * 11 10 9 14 14 C 1.50699 * 109.47120 * 120.00933 * 2 1 3 15 15 O 1.21278 * 120.00392 * 120.00199 * 14 2 1 16 16 N 1.34782 * 119.99622 * 299.99414 * 14 2 1 17 17 C 1.46505 * 119.99824 * 0.02562 * 16 14 2 18 18 C 1.46493 * 120.00012 * 180.02562 * 16 14 2 19 19 C 1.50705 * 109.46879 * 90.00227 * 18 16 14 20 20 H 1.07997 * 120.00319 * 359.97438 * 19 18 16 21 21 C 1.37883 * 119.99937 * 180.02562 * 19 18 16 22 22 N 1.31515 * 119.99685 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99939 * 180.02562 * 21 19 18 24 24 H 1.48489 * 109.47153 * 59.99987 * 23 21 19 25 25 H 1.48504 * 109.46703 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46755 * 299.99476 * 23 21 19 27 27 H 1.08994 * 109.47421 * 299.99717 * 1 2 3 28 28 H 1.09010 * 109.47442 * 59.99569 * 1 2 3 29 29 H 1.09003 * 109.47507 * 179.97438 * 1 2 3 30 30 H 0.97002 * 120.00335 * 275.00344 * 4 2 1 31 31 H 1.07997 * 125.89482 * 359.96259 * 9 8 5 32 32 H 1.09004 * 109.46875 * 90.01950 * 12 11 10 33 33 H 1.08995 * 109.46942 * 210.02145 * 12 11 10 34 34 H 1.09004 * 109.46897 * 330.02722 * 12 11 10 35 35 H 1.08004 * 126.12454 * 180.23909 * 13 11 10 36 36 H 1.08997 * 109.47352 * 89.99767 * 17 16 14 37 37 H 1.08997 * 109.46728 * 209.99954 * 17 16 14 38 38 H 1.09000 * 109.47178 * 329.99434 * 17 16 14 39 39 H 1.08997 * 109.47583 * 210.00368 * 18 16 14 40 40 H 1.08994 * 109.47337 * 330.00564 * 18 16 14 41 41 H 0.97006 * 119.99409 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 -1.1962 5 16 2.4121 0.1774 -2.5505 6 8 1.3246 1.0595 -2.7922 7 8 2.8776 -0.7632 -3.5086 8 6 3.7927 1.1911 -2.1371 9 6 5.1402 0.8400 -2.2687 10 7 5.8671 1.8490 -1.8619 11 7 5.0037 2.8754 -1.4576 12 6 5.4055 4.1830 -0.9330 13 6 3.7367 2.4488 -1.6411 14 6 2.0322 -0.7106 1.2303 15 8 2.7295 -1.6966 1.1190 16 7 1.7067 -0.2502 2.4545 17 6 0.8640 0.9407 2.5890 18 6 2.1954 -0.9406 3.6506 19 6 3.5228 -0.3565 4.0605 20 1 3.9590 0.4481 3.4872 21 6 4.1810 -0.8502 5.1670 22 7 3.6506 -1.8310 5.8642 23 14 5.8261 -0.1258 5.6755 24 1 5.6599 1.3197 5.9722 25 1 6.3221 -0.8266 6.8872 26 1 6.8041 -0.2953 4.5710 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 2.1108 -1.6561 -1.1951 31 1 5.5158 -0.1015 -2.6414 32 1 5.5107 4.8884 -1.7574 33 1 4.6465 4.5451 -0.2396 34 1 6.3583 4.0883 -0.4121 35 1 2.8388 3.0098 -1.4280 36 1 -0.1838 0.6425 2.6225 37 1 1.1218 1.4662 3.5085 38 1 1.0273 1.5995 1.7361 39 1 1.4776 -0.8155 4.4612 40 1 2.3169 -2.0017 3.4335 41 1 4.1136 -2.1780 6.6429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087188921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:46 Heat of formation + Delta-G solvation = -50.416906 kcal Electronic energy + Delta-G solvation = -27171.244072 eV Core-core repulsion = 23214.556573 eV Total energy + Delta-G solvation = -3956.687499 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.32927 -40.94249 -38.24593 -36.88917 -36.77486 -36.38947 -34.70660 -34.41300 -31.60274 -31.27096 -29.28833 -27.97150 -27.55890 -25.72176 -23.82025 -23.08081 -22.38724 -20.58361 -20.34521 -19.14803 -18.70481 -18.60265 -17.71599 -17.26624 -16.79470 -16.70821 -16.53922 -16.33372 -16.00049 -15.51742 -15.24114 -14.85177 -14.44716 -14.20764 -14.17628 -13.77792 -13.71639 -13.54010 -13.45224 -13.39729 -13.22288 -13.10244 -13.08283 -12.84407 -12.73021 -12.63241 -12.57537 -12.30009 -12.14844 -11.78880 -11.71795 -10.90553 -10.72499 -10.64757 -10.39722 -10.26785 -9.40409 -8.22996 -6.37031 -0.51885 0.51993 1.15960 1.33635 1.38097 1.44463 1.44783 1.78455 2.01162 2.32881 2.48528 2.82646 3.07023 3.16098 3.52940 3.66825 3.75086 3.87336 4.07512 4.13907 4.26963 4.36219 4.44100 4.53400 4.53966 4.64584 4.74728 4.88282 4.95126 5.06162 5.13156 5.24621 5.26476 5.39351 5.55597 5.78816 5.83926 5.94075 6.05967 6.31027 6.69532 6.78124 7.27321 7.44803 8.83613 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.004573 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.872339 B = 6121.639942 C = 7460.326360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.145 3.855 3 H 0.129 0.871 4 N -1.100 6.100 5 S 2.755 3.245 6 O -0.964 6.964 7 O -0.989 6.989 8 C -0.837 4.837 9 C 0.120 3.880 10 N -0.328 5.328 11 N -0.361 5.361 12 C 0.078 3.922 13 C 0.181 3.819 14 C 0.491 3.509 15 O -0.586 6.586 16 N -0.603 5.603 17 C 0.066 3.934 18 C 0.259 3.741 19 C -0.540 4.540 20 H 0.053 0.947 21 C 0.010 3.990 22 N -0.927 5.927 23 Si 0.961 3.039 24 H -0.257 1.257 25 H -0.279 1.279 26 H -0.284 1.284 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.423 0.577 31 H 0.202 0.798 32 H 0.103 0.897 33 H 0.127 0.873 34 H 0.090 0.910 35 H 0.237 0.763 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.028 0.972 40 H -0.002 1.002 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.805 15.478 -13.792 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.034 3.966 3 H 0.146 0.854 4 N -0.859 5.859 5 S 2.843 3.157 6 O -0.954 6.954 7 O -0.980 6.980 8 C -0.937 4.937 9 C -0.069 4.069 10 N -0.148 5.148 11 N -0.138 5.138 12 C -0.061 4.061 13 C 0.026 3.974 14 C 0.278 3.722 15 O -0.466 6.466 16 N -0.334 5.334 17 C -0.076 4.076 18 C 0.138 3.862 19 C -0.579 4.579 20 H 0.071 0.929 21 C -0.190 4.190 22 N -0.566 5.566 23 Si 0.786 3.214 24 H -0.181 1.181 25 H -0.204 1.204 26 H -0.210 1.210 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.260 0.740 31 H 0.219 0.781 32 H 0.121 0.879 33 H 0.145 0.855 34 H 0.108 0.892 35 H 0.254 0.746 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.562 15.674 -14.194 21.633 hybrid contribution 1.124 -0.865 1.003 1.737 sum -3.438 14.809 -13.191 20.128 Atomic orbital electron populations 1.22585 0.90459 1.04309 1.06217 1.20697 0.97530 0.96296 0.82069 0.85384 1.55404 1.81558 1.20272 1.28704 0.99911 0.72496 0.72097 0.71192 1.93545 1.51445 1.66635 1.83811 1.93532 1.82754 1.62913 1.58794 1.31605 1.16388 1.12665 1.33022 1.23797 0.90069 0.98487 0.94520 1.77383 1.18368 0.98005 1.21035 1.49458 1.04126 1.14282 1.45923 1.22527 1.04692 0.77502 1.01410 1.23202 0.91040 0.92867 0.90314 1.21301 0.80219 0.85044 0.85642 1.90646 1.39965 1.29173 1.86809 1.48086 1.50004 1.29572 1.05782 1.22267 0.94615 0.86453 1.04220 1.18762 0.93657 0.91762 0.82045 1.21660 1.05932 1.19044 1.11234 0.92889 1.25792 1.01456 0.95294 0.96429 1.70035 1.40632 1.27097 1.18857 0.85572 0.79190 0.79325 0.77334 1.18147 1.20449 1.20981 0.87782 0.88391 0.92126 0.74040 0.78129 0.87851 0.85480 0.89150 0.74645 0.90001 0.91266 0.88189 0.95411 0.98423 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.36 9.15 71.98 0.66 -2.70 16 2 C 0.15 3.65 2.38 44.24 0.11 3.75 16 3 H 0.13 2.37 6.88 -2.39 -0.02 2.35 16 4 N -1.10 -28.53 5.26 -172.53 -0.91 -29.44 16 5 S 2.75 67.43 5.79 -56.49 -0.33 67.11 16 6 O -0.96 -23.28 17.10 -128.00 -2.19 -25.47 16 7 O -0.99 -30.43 17.87 -128.00 -2.29 -32.72 16 8 C -0.84 -20.11 6.00 21.99 0.13 -19.97 16 9 C 0.12 3.31 11.81 85.24 1.01 4.32 16 10 N -0.33 -9.25 12.58 -57.02 -0.72 -9.97 16 11 N -0.36 -7.43 4.01 -369.54 -1.48 -8.92 16 12 C 0.08 0.81 11.47 127.77 1.47 2.28 16 13 C 0.18 3.32 11.00 83.54 0.92 4.24 16 14 C 0.49 18.64 7.14 87.66 0.63 19.27 16 15 O -0.59 -28.55 15.57 -3.02 -0.05 -28.59 16 16 N -0.60 -23.11 2.86 -851.15 -2.43 -25.54 16 17 C 0.07 1.61 8.80 127.77 1.12 2.73 16 18 C 0.26 13.30 5.16 85.64 0.44 13.74 16 19 C -0.54 -29.96 9.39 25.60 0.24 -29.72 16 20 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 21 C 0.01 0.54 5.46 84.66 0.46 1.00 16 22 N -0.93 -54.97 13.29 21.45 0.28 -54.69 16 23 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 24 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 27 H 0.10 1.54 4.53 -2.39 -0.01 1.53 16 28 H 0.10 1.57 7.64 -2.38 -0.02 1.55 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.42 11.77 8.21 -96.74 -0.79 10.97 16 31 H 0.20 4.94 8.06 -2.91 -0.02 4.92 16 32 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.24 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.08 1.55 6.95 -2.39 -0.02 1.54 16 37 H 0.07 1.81 8.07 -2.39 -0.02 1.79 16 38 H 0.10 1.60 6.01 -2.39 -0.01 1.58 16 39 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 40 H 0.00 -0.14 7.42 -2.39 -0.02 -0.16 16 41 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 Total: -1.00 -87.25 361.55 -0.62 -87.87 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.28 Total: 15.38 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 7.18 Total: -1.07 kcal Atomic # 7 Polarization: -123.30 SS G_CDS: -5.25 Total: -128.55 kcal Atomic # 8 Polarization: -82.26 SS G_CDS: -4.52 Total: -86.78 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 67.43 SS G_CDS: -0.33 Total: 67.11 kcal Total: -87.25 -0.62 -87.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087188921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.454 kcal (2) G-P(sol) polarization free energy of solvation -87.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds