Wall clock time and date at job start Tue Mar 31 2020 05:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46953 * 2 1 4 4 N 1.46499 * 109.47020 * 119.99316 * 2 1 3 5 5 S 1.65593 * 120.00527 * 265.00588 * 4 2 1 6 6 O 1.42102 * 106.40374 * 311.45742 * 5 4 2 7 7 O 1.42107 * 106.40435 * 178.54115 * 5 4 2 8 8 C 1.76202 * 107.21936 * 64.99822 * 5 4 2 9 9 C 1.39871 * 126.04098 * 269.97378 * 8 5 4 10 10 N 1.30827 * 108.20096 * 180.02562 * 9 8 5 11 11 N 1.40085 * 108.20951 * 0.02562 * 10 9 8 12 12 C 1.46497 * 126.03563 * 180.02562 * 11 10 9 13 13 C 1.34946 * 107.92305 * 359.97438 * 11 10 9 14 14 C 1.50700 * 109.47447 * 239.99951 * 2 1 3 15 15 O 1.21278 * 119.99587 * 245.87790 * 14 2 1 16 16 N 1.34773 * 120.00075 * 65.87430 * 14 2 1 17 17 C 1.46505 * 119.99766 * 4.64824 * 16 14 2 18 18 C 1.46493 * 120.00267 * 184.64679 * 16 14 2 19 19 C 1.50704 * 109.46935 * 89.99959 * 18 16 14 20 20 H 1.07994 * 119.99896 * 0.02562 * 19 18 16 21 21 C 1.37881 * 120.00058 * 180.02562 * 19 18 16 22 22 N 1.31517 * 119.99629 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00069 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47303 * 90.00093 * 23 21 19 25 25 H 1.48502 * 109.47297 * 210.00059 * 23 21 19 26 26 H 1.48505 * 109.47351 * 330.00011 * 23 21 19 27 27 H 1.08996 * 109.47692 * 309.37248 * 1 2 3 28 28 H 1.09002 * 109.47095 * 69.36840 * 1 2 3 29 29 H 1.08998 * 109.47011 * 189.36735 * 1 2 3 30 30 H 0.97007 * 119.99294 * 84.99679 * 4 2 1 31 31 H 1.07996 * 125.89684 * 359.97438 * 9 8 5 32 32 H 1.08998 * 109.47388 * 269.99371 * 12 11 10 33 33 H 1.09002 * 109.47855 * 30.00143 * 12 11 10 34 34 H 1.09008 * 109.46780 * 149.99694 * 12 11 10 35 35 H 1.08001 * 126.12204 * 180.27093 * 13 11 10 36 36 H 1.09007 * 109.46835 * 95.83455 * 17 16 14 37 37 H 1.09000 * 109.46754 * 215.83151 * 17 16 14 38 38 H 1.09001 * 109.47538 * 335.83696 * 17 16 14 39 39 H 1.08994 * 109.47622 * 210.00298 * 18 16 14 40 40 H 1.09000 * 109.46988 * 330.00236 * 18 16 14 41 41 H 0.97004 * 119.99799 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 16 2.4120 0.1773 2.5505 6 8 3.2435 1.2445 2.1157 7 8 2.8122 -0.7696 3.5316 8 6 0.9272 0.9149 3.1474 9 6 0.4292 2.1709 2.7858 10 7 -0.6892 2.3694 3.4350 11 7 -0.9383 1.2445 4.2319 12 6 -2.0887 1.0544 5.1188 13 6 0.0678 0.3666 4.0372 14 6 2.0324 -0.7104 -1.2304 15 8 2.6392 -1.7549 -1.1222 16 7 1.8073 -0.1851 -2.4510 17 6 1.1646 1.1254 -2.5772 18 6 2.2052 -0.9244 -3.6514 19 6 1.0677 -1.8062 -4.0984 20 1 0.1410 -1.8145 -3.5440 21 6 1.2101 -2.6021 -5.2152 22 7 2.3389 -2.5922 -5.8901 23 14 -0.2000 -3.6944 -5.7697 24 1 -1.0625 -2.9458 -6.7189 25 1 0.3438 -4.9019 -6.4417 26 1 -1.0026 -4.1041 -4.5893 27 1 -0.3634 0.6519 0.7944 28 1 -0.3633 0.3621 -0.9618 29 1 -0.3633 -1.0140 0.1673 30 1 2.1108 -1.6561 1.1950 31 1 0.8890 2.8584 2.0914 32 1 -1.8500 1.4379 6.1108 33 1 -2.9487 1.5915 4.7189 34 1 -2.3234 -0.0080 5.1868 35 1 0.1670 -0.6020 4.5045 36 1 1.9283 1.8955 -2.6871 37 1 0.5161 1.1291 -3.4534 38 1 0.5714 1.3267 -1.6852 39 1 2.4534 -0.2208 -4.4460 40 1 3.0758 -1.5406 -3.4267 41 1 2.4391 -3.1519 -6.6760 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087188923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:50 Heat of formation + Delta-G solvation = -15.932555 kcal Electronic energy + Delta-G solvation = -26793.241818 eV Core-core repulsion = 22838.049672 eV Total energy + Delta-G solvation = -3955.192146 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.63927 -39.42953 -37.17412 -35.81055 -35.38757 -34.88763 -33.82531 -32.63973 -30.84137 -30.03288 -27.66285 -27.43632 -26.09245 -24.08801 -22.33650 -22.22877 -21.68441 -19.52493 -18.94146 -18.37831 -17.54679 -16.57027 -16.42381 -16.04918 -15.86991 -15.66879 -15.26772 -14.86583 -14.66427 -14.64979 -13.92997 -13.72036 -13.54963 -13.36973 -13.23167 -12.94730 -12.54323 -12.19557 -12.10757 -12.08312 -12.04850 -11.98880 -11.87281 -11.54312 -11.34507 -11.19179 -10.93982 -10.87465 -10.58988 -10.18802 -10.00138 -9.77954 -9.65712 -9.56577 -8.87047 -8.46053 -7.68872 -6.06731 -4.11966 0.42815 1.19582 1.95011 1.99583 3.08825 3.27076 3.28366 3.35015 3.38904 3.77772 3.87800 3.97533 4.21128 4.41101 4.43525 4.59731 4.67595 4.79155 4.87880 5.04363 5.09802 5.16380 5.17518 5.27606 5.41601 5.50667 5.67372 5.92550 5.99894 6.00278 6.12566 6.28264 6.33574 7.00984 7.03861 7.07873 7.43297 7.48981 7.89339 8.20050 8.34583 8.84650 9.00339 9.53036 11.01365 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.017973 B = 0.003222 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.490888 B = 8688.231421 C = 9236.656518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.130 3.870 3 H 0.110 0.890 4 N -1.097 6.097 5 S 2.730 3.270 6 O -0.958 6.958 7 O -0.965 6.965 8 C -0.815 4.815 9 C 0.134 3.866 10 N -0.292 5.292 11 N -0.364 5.364 12 C 0.091 3.909 13 C 0.181 3.819 14 C 0.507 3.493 15 O -0.533 6.533 16 N -0.597 5.597 17 C 0.065 3.935 18 C 0.244 3.756 19 C -0.528 4.528 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.893 5.893 23 Si 0.899 3.101 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.427 0.573 31 H 0.199 0.801 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.193 0.807 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.046 0.954 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.176 9.706 20.486 24.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.019 3.981 3 H 0.128 0.872 4 N -0.858 5.858 5 S 2.816 3.184 6 O -0.947 6.947 7 O -0.955 6.955 8 C -0.913 4.913 9 C -0.056 4.056 10 N -0.111 5.111 11 N -0.141 5.141 12 C -0.050 4.050 13 C 0.027 3.973 14 C 0.291 3.709 15 O -0.410 6.410 16 N -0.329 5.329 17 C -0.079 4.079 18 C 0.125 3.875 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.200 1.200 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.264 0.736 31 H 0.216 0.784 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.210 0.790 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.119 10.162 21.058 25.097 hybrid contribution -0.965 -1.395 -0.574 1.791 sum -10.084 8.767 20.484 24.457 Atomic orbital electron populations 1.22471 0.93446 1.03791 1.03628 1.20684 0.95177 0.97000 0.85270 0.87236 1.55275 1.83794 1.20839 1.25899 1.00749 0.72718 0.72887 0.72031 1.93576 1.63213 1.56429 1.81528 1.93571 1.80968 1.62128 1.58855 1.31734 1.28669 1.09992 1.20918 1.23575 0.91419 0.93908 0.96659 1.77456 1.18447 1.06078 1.09077 1.49106 1.18735 1.12961 1.33315 1.22072 0.86287 1.03916 0.92695 1.22483 0.85985 0.95578 0.93241 1.20127 0.80663 0.85851 0.84263 1.90656 1.41117 1.23406 1.85838 1.48081 1.58589 1.19103 1.07138 1.22015 0.97838 0.85016 1.03028 1.19329 0.96811 0.91443 0.79912 1.21419 0.99974 1.24352 1.10967 0.92414 1.24943 0.95981 0.96805 0.96396 1.69936 1.24624 1.40054 1.18575 0.86493 0.82077 0.80122 0.78657 1.20653 1.21091 1.19961 0.91757 0.89511 0.91079 0.73582 0.78408 0.89999 0.88615 0.88761 0.79028 0.93165 0.90674 0.91177 0.94802 0.93593 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 8.99 37.16 0.33 -1.71 16 2 C 0.13 1.85 2.48 -69.09 -0.17 1.67 16 3 H 0.11 1.33 7.08 -51.93 -0.37 0.97 16 4 N -1.10 -14.71 5.30 -5.88 -0.03 -14.74 16 5 S 2.73 34.32 5.86 -107.50 -0.63 33.69 16 6 O -0.96 -14.54 17.21 -57.17 -0.98 -15.53 16 7 O -0.97 -14.02 17.85 -57.17 -1.02 -15.04 16 8 C -0.81 -8.28 5.50 -40.01 -0.22 -8.50 16 9 C 0.13 1.34 10.81 -17.37 -0.19 1.15 16 10 N -0.29 -3.04 12.57 30.62 0.39 -2.66 16 11 N -0.36 -2.97 4.01 -68.16 -0.27 -3.25 16 12 C 0.09 0.34 11.47 59.85 0.69 1.03 16 13 C 0.18 1.50 11.23 -17.22 -0.19 1.31 16 14 C 0.51 10.10 7.05 -10.99 -0.08 10.02 16 15 O -0.53 -12.84 15.51 5.56 0.09 -12.75 16 16 N -0.60 -12.15 2.86 -182.95 -0.52 -12.67 16 17 C 0.06 0.96 9.74 59.85 0.58 1.54 16 18 C 0.24 6.25 5.22 -5.20 -0.03 6.22 16 19 C -0.53 -14.55 9.39 -34.44 -0.32 -14.88 16 20 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 23 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 27 H 0.06 0.61 6.38 -51.93 -0.33 0.28 16 28 H 0.09 1.01 5.41 -51.93 -0.28 0.73 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.43 5.86 8.15 -34.47 -0.28 5.58 16 31 H 0.20 1.55 8.06 -52.49 -0.42 1.12 16 32 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.13 8.14 -51.92 -0.42 -0.29 16 35 H 0.19 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.07 1.13 8.11 -51.93 -0.42 0.71 16 38 H 0.07 0.80 4.11 -51.93 -0.21 0.58 16 39 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 40 H 0.05 1.34 7.36 -51.93 -0.38 0.95 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -38.80 360.30 -6.74 -45.54 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.20 Total: 1.62 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 0.31 Total: -0.53 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.29 Total: -58.83 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -1.92 Total: -43.32 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 34.32 SS G_CDS: -0.63 Total: 33.69 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.80 -6.74 -45.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087188923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.609 kcal (2) G-P(sol) polarization free energy of solvation -38.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds