Wall clock time and date at job start Tue Mar 31 2020 05:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46492 * 109.47536 * 2 1 4 4 C 1.37096 * 120.00166 * 82.84371 * 3 2 1 5 5 H 1.08007 * 120.00024 * 171.29856 * 4 3 2 6 6 C 1.38948 * 120.00299 * 351.29894 * 4 3 2 7 7 N 1.31411 * 119.99676 * 1.29154 * 6 4 3 8 8 Si 1.86794 * 120.00369 * 181.29519 * 6 4 3 9 9 H 1.48504 * 109.47321 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47374 * 120.00187 * 8 6 4 11 11 H 1.48505 * 109.46853 * 240.00062 * 8 6 4 12 12 C 1.34781 * 120.00144 * 262.85084 * 3 2 1 13 13 O 1.21296 * 119.99930 * 5.86082 * 12 3 2 14 14 C 1.50702 * 120.00331 * 185.86730 * 12 3 2 15 15 H 1.09004 * 109.46746 * 313.36560 * 14 12 3 16 16 C 1.52998 * 109.47086 * 73.36416 * 14 12 3 17 17 N 1.46497 * 109.46898 * 193.36728 * 14 12 3 18 18 S 1.65607 * 119.99909 * 144.99895 * 17 14 12 19 19 O 1.42102 * 106.39909 * 311.45662 * 18 17 14 20 20 O 1.42090 * 106.40296 * 178.53673 * 18 17 14 21 21 C 1.76199 * 107.21664 * 64.99592 * 18 17 14 22 22 C 1.39864 * 126.04085 * 90.02723 * 21 18 17 23 23 N 1.30830 * 108.20592 * 179.97438 * 22 21 18 24 24 N 1.40090 * 108.20659 * 0.02562 * 23 22 21 25 25 C 1.46503 * 126.03819 * 180.02562 * 24 23 22 26 26 C 1.34947 * 107.91854 * 359.75433 * 24 23 22 27 27 H 1.08995 * 109.47360 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46985 * 299.99973 * 1 2 3 29 29 H 1.08994 * 109.47014 * 60.00020 * 1 2 3 30 30 H 1.09003 * 109.47178 * 239.99581 * 2 1 3 31 31 H 1.09004 * 109.46937 * 119.99928 * 2 1 3 32 32 H 0.97006 * 120.00255 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47302 * 294.88447 * 16 14 12 34 34 H 1.09002 * 109.47127 * 54.88748 * 16 14 12 35 35 H 1.09005 * 109.46760 * 174.88413 * 16 14 12 36 36 H 0.97000 * 120.00494 * 324.99910 * 17 14 12 37 37 H 1.08001 * 125.89919 * 359.95511 * 22 21 18 38 38 H 1.08996 * 109.47183 * 90.02064 * 25 24 23 39 39 H 1.08997 * 109.46495 * 210.02002 * 25 24 23 40 40 H 1.08995 * 109.46942 * 330.02329 * 25 24 23 41 41 H 1.08007 * 126.12333 * 180.24359 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1075 2.0767 1.1780 5 1 2.5962 3.0396 1.2010 6 6 1.5691 1.5430 2.3425 7 7 0.9969 0.3602 2.3198 8 14 1.6585 2.5068 3.9401 9 1 2.3479 3.8001 3.7002 10 1 0.2843 2.7633 4.4411 11 1 2.4150 1.7229 4.9493 12 6 2.3801 1.9680 -1.1581 13 8 2.2020 1.3928 -2.2111 14 6 3.0057 3.3390 -1.1450 15 1 2.4294 3.9951 -0.4926 16 6 4.4421 3.2391 -0.6277 17 7 3.0130 3.8854 -2.5042 18 16 2.7931 5.5091 -2.7450 19 8 1.6563 5.8783 -1.9765 20 8 2.8865 5.7231 -4.1466 21 6 4.1718 6.3349 -2.0227 22 6 5.3721 6.6508 -2.6674 23 7 6.1492 7.2597 -1.8090 24 7 5.4672 7.3503 -0.5887 25 6 5.9779 7.9617 0.6408 26 6 4.2545 6.7801 -0.7475 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.6214 -0.0126 3.1328 33 1 4.4317 2.9188 0.4142 34 1 4.9939 2.5135 -1.2253 35 1 4.9241 4.2138 -0.7034 36 1 3.1466 3.2963 -3.2631 37 1 5.6155 6.4299 -3.6962 38 1 5.7111 9.0183 0.6591 39 1 5.5398 7.4613 1.5044 40 1 7.0626 7.8602 0.6736 41 1 3.4880 6.6928 0.0084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087189699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:30 Heat of formation + Delta-G solvation = -5.911964 kcal Electronic energy + Delta-G solvation = -27520.876956 eV Core-core repulsion = 23566.119336 eV Total energy + Delta-G solvation = -3954.757620 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.42094 -38.97320 -36.90255 -35.62620 -35.54423 -34.51142 -33.60844 -31.59626 -30.64866 -30.28042 -28.72873 -27.25204 -25.02802 -23.76231 -22.07607 -21.50672 -21.36441 -19.31953 -19.20289 -18.05163 -17.80555 -16.97328 -15.91287 -15.80120 -15.60420 -15.43379 -14.76029 -14.49448 -14.34408 -14.20431 -13.70294 -13.37550 -13.17733 -13.09349 -13.00526 -12.65681 -12.44692 -12.07349 -11.86985 -11.75386 -11.68812 -11.63578 -11.45707 -11.33505 -11.19456 -10.94358 -10.74466 -10.64765 -10.52217 -10.17836 -9.92841 -9.78075 -9.41307 -9.28064 -8.88041 -8.36295 -7.83499 -6.31158 -4.00345 0.72131 1.41885 2.16974 2.21189 3.00655 3.09614 3.13581 3.40784 3.77132 3.95518 4.06600 4.13721 4.46111 4.64130 4.74351 4.79513 4.91727 4.97990 5.06968 5.33508 5.37230 5.50829 5.68587 5.70536 5.90877 6.20709 6.21626 6.48203 6.54498 6.55399 6.65315 6.82556 6.94459 7.08653 7.20727 7.24628 7.42264 7.50937 7.75099 7.86564 8.37696 8.96052 9.43776 9.81934 10.53045 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.013043 B = 0.004816 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.246428 B = 5812.839110 C = 7204.486343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.132 3.868 3 N -0.435 5.435 4 C -0.328 4.328 5 H 0.102 0.898 6 C 0.030 3.970 7 N -0.862 5.862 8 Si 0.926 3.074 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.281 1.281 12 C 0.451 3.549 13 O -0.603 6.603 14 C 0.145 3.855 15 H 0.106 0.894 16 C -0.162 4.162 17 N -1.095 6.095 18 S 2.728 3.272 19 O -0.963 6.963 20 O -0.967 6.967 21 C -0.813 4.813 22 C 0.136 3.864 23 N -0.297 5.297 24 N -0.364 5.364 25 C 0.091 3.909 26 C 0.180 3.820 27 H 0.031 0.969 28 H 0.088 0.912 29 H 0.017 0.983 30 H 0.034 0.966 31 H 0.111 0.889 32 H 0.266 0.734 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.423 0.577 37 H 0.198 0.802 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.339 10.892 0.568 13.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.010 3.990 3 N -0.153 5.153 4 C -0.456 4.456 5 H 0.119 0.881 6 C -0.173 4.173 7 N -0.502 5.502 8 Si 0.753 3.247 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.207 1.207 12 C 0.237 3.763 13 O -0.490 6.490 14 C 0.035 3.965 15 H 0.124 0.876 16 C -0.222 4.222 17 N -0.857 5.857 18 S 2.814 3.186 19 O -0.952 6.952 20 O -0.957 6.957 21 C -0.911 4.911 22 C -0.053 4.053 23 N -0.116 5.116 24 N -0.141 5.141 25 C -0.050 4.050 26 C 0.027 3.973 27 H 0.050 0.950 28 H 0.106 0.894 29 H 0.036 0.964 30 H 0.052 0.948 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.260 0.740 37 H 0.214 0.786 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 8.682 11.622 0.338 14.511 hybrid contribution -0.081 -0.148 0.962 0.977 sum 8.601 11.474 1.301 14.399 Atomic orbital electron populations 1.22124 0.96920 0.99285 1.01073 1.21512 0.94528 0.82340 1.00627 1.43831 1.54097 1.12189 1.05188 1.19814 1.36922 1.03298 0.85557 0.88080 1.25275 0.95861 0.96439 0.99738 1.70233 1.36423 1.15668 1.27877 0.85872 0.78269 0.79246 0.81304 1.19428 1.20494 1.20696 1.19762 0.84754 0.87532 0.84215 1.90516 1.61712 1.65915 1.30819 1.20455 0.97227 0.96914 0.81922 0.87648 1.22222 0.95085 1.01761 1.03120 1.55228 1.90364 1.25569 1.14549 1.00752 0.73046 0.71904 0.72884 1.93579 1.46390 1.82590 1.72691 1.93547 1.87287 1.84953 1.29881 1.31772 1.22582 1.31100 1.05647 1.23514 0.89209 0.93233 0.99394 1.77406 1.20363 1.23533 0.90313 1.49071 1.11285 1.43337 1.10414 1.22070 1.02225 0.98781 0.81914 1.22557 0.88487 0.89741 0.96561 0.95008 0.89402 0.96370 0.94770 0.87156 0.92250 0.89756 0.92039 0.92860 0.73966 0.78576 0.90110 0.88588 0.88729 0.78910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.46 37.16 0.35 -2.81 16 2 C 0.13 3.17 5.46 -4.05 -0.02 3.15 16 3 N -0.44 -10.40 2.64 -114.81 -0.30 -10.71 16 4 C -0.33 -7.54 8.56 -14.93 -0.13 -7.67 16 5 H 0.10 2.10 5.17 -52.48 -0.27 1.83 16 6 C 0.03 0.69 5.25 -17.47 -0.09 0.60 16 7 N -0.86 -20.41 7.17 55.50 0.40 -20.01 16 8 Si 0.93 17.81 29.55 -169.99 -5.02 12.78 16 9 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 10 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 11 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 12 C 0.45 10.41 6.93 -10.98 -0.08 10.33 16 13 O -0.60 -15.31 15.51 5.54 0.09 -15.23 16 14 C 0.15 2.67 2.46 -69.08 -0.17 2.50 16 15 H 0.11 1.90 6.39 -51.93 -0.33 1.57 16 16 C -0.16 -2.54 9.25 37.16 0.34 -2.19 16 17 N -1.10 -18.34 5.35 -5.88 -0.03 -18.37 16 18 S 2.73 42.76 5.86 -107.50 -0.63 42.13 16 19 O -0.96 -17.60 17.18 -57.17 -0.98 -18.59 16 20 O -0.97 -16.78 17.87 -57.17 -1.02 -17.80 16 21 C -0.81 -10.71 5.13 -40.02 -0.21 -10.92 16 22 C 0.14 1.71 11.81 -17.37 -0.21 1.50 16 23 N -0.30 -3.81 12.58 30.62 0.39 -3.43 16 24 N -0.36 -3.94 4.01 -68.16 -0.27 -4.21 16 25 C 0.09 0.57 11.47 59.85 0.69 1.26 16 26 C 0.18 2.07 10.46 -17.22 -0.18 1.89 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 2.16 5.84 -51.92 -0.30 1.86 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.03 0.82 7.30 -51.93 -0.38 0.45 16 31 H 0.11 2.72 5.91 -51.93 -0.31 2.41 16 32 H 0.27 6.00 8.31 -40.82 -0.34 5.66 16 33 H 0.08 1.35 6.54 -51.93 -0.34 1.01 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.71 6.21 -51.93 -0.32 0.38 16 36 H 0.42 7.05 8.10 -34.47 -0.28 6.77 16 37 H 0.20 2.00 8.06 -52.49 -0.42 1.57 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.19 1.75 8.06 -52.48 -0.42 1.32 16 LS Contribution 350.02 15.07 5.27 5.27 Total: -1.00 -32.62 350.02 -6.87 -39.49 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.05 Total: 11.01 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 0.30 Total: -2.36 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.17 Total: -56.72 kcal Atomic # 8 Polarization: -49.70 SS G_CDS: -1.92 Total: -51.61 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.02 Total: 12.78 kcal Atomic # 16 Polarization: 42.76 SS G_CDS: -0.63 Total: 42.13 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.62 -6.87 -39.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087189699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.581 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds