Wall clock time and date at job start Tue Mar 31 2020 05:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47400 * 2 1 4 4 C 1.37093 * 119.99975 * 268.79147 * 3 2 1 5 5 H 1.08001 * 120.00249 * 186.44249 * 4 3 2 6 6 C 1.38949 * 119.99953 * 6.43333 * 4 3 2 7 7 N 1.31413 * 120.00203 * 27.31776 * 6 4 3 8 8 Si 1.86804 * 119.99956 * 207.32039 * 6 4 3 9 9 H 1.48495 * 109.47445 * 59.99823 * 8 6 4 10 10 H 1.48500 * 109.47032 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46801 * 299.99772 * 8 6 4 12 12 C 1.34772 * 119.99758 * 88.78597 * 3 2 1 13 13 O 1.21294 * 120.00485 * 3.27003 * 12 3 2 14 14 C 1.50706 * 119.99810 * 182.99659 * 12 3 2 15 15 H 1.09000 * 109.47102 * 38.73038 * 14 12 3 16 16 C 1.53000 * 109.46802 * 278.73010 * 14 12 3 17 17 N 1.46494 * 109.47277 * 158.73569 * 14 12 3 18 18 S 1.65605 * 119.99869 * 215.00305 * 17 14 12 19 19 O 1.42102 * 106.40269 * 178.53650 * 18 17 14 20 20 O 1.42102 * 106.39678 * 311.45352 * 18 17 14 21 21 C 1.76193 * 107.22324 * 64.99385 * 18 17 14 22 22 C 1.39874 * 126.03985 * 269.69614 * 21 18 17 23 23 N 1.30836 * 108.20092 * 179.81435 * 22 21 18 24 24 N 1.40091 * 108.20664 * 0.43627 * 23 22 21 25 25 C 1.46499 * 126.03752 * 179.69548 * 24 23 22 26 26 C 1.34949 * 107.92199 * 359.72248 * 24 23 22 27 27 H 1.09005 * 109.47233 * 292.83757 * 1 2 3 28 28 H 1.09002 * 109.47048 * 52.84046 * 1 2 3 29 29 H 1.09001 * 109.47303 * 172.84065 * 1 2 3 30 30 H 1.08993 * 109.47279 * 239.99621 * 2 1 3 31 31 H 1.09010 * 109.47049 * 120.00098 * 2 1 3 32 32 H 0.97003 * 119.99708 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.47747 * 304.03759 * 16 14 12 34 34 H 1.09008 * 109.47182 * 64.03890 * 16 14 12 35 35 H 1.08996 * 109.47175 * 184.03459 * 16 14 12 36 36 H 0.96998 * 120.00531 * 34.99475 * 17 14 12 37 37 H 1.08000 * 125.89658 * 359.97438 * 22 21 18 38 38 H 1.09004 * 109.46865 * 270.02402 * 25 24 23 39 39 H 1.09000 * 109.47114 * 30.02878 * 25 24 23 40 40 H 1.09001 * 109.47172 * 150.02923 * 25 24 23 41 41 H 1.08004 * 126.12371 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2705 2.0191 -1.1870 5 1 2.7278 2.9975 -1.1878 6 6 1.9378 1.4068 -2.3891 7 7 0.9531 0.5377 -2.4334 8 14 2.8904 1.8190 -3.9423 9 1 4.3226 1.4774 -3.7500 10 1 2.3431 1.0379 -5.0805 11 1 2.7620 3.2700 -4.2312 12 6 2.2197 2.0247 1.1669 13 8 2.0535 1.4418 2.2176 14 6 2.6572 3.4669 1.1664 15 1 2.1436 4.0021 0.3678 16 6 4.1686 3.5411 0.9402 17 7 2.3260 4.0782 2.4558 18 16 1.8594 5.6657 2.5240 19 8 1.5789 5.9433 3.8891 20 8 2.8104 6.3964 1.7617 21 6 0.3268 5.7964 1.6647 22 6 0.1680 6.0684 0.3018 23 7 -1.1127 6.0820 0.0343 24 7 -1.8107 5.8287 1.2222 25 6 -3.2668 5.7624 1.3689 26 6 -0.9048 5.6570 2.2076 27 1 -0.3634 0.3989 0.9471 28 1 -0.3633 0.6208 -0.8190 29 1 -0.3634 -1.0196 -0.1281 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 0.7212 0.1100 -3.2726 33 1 4.6791 2.9464 1.6976 34 1 4.4075 3.1515 -0.0495 35 1 4.4961 4.5783 1.0110 36 1 2.3798 3.5532 3.2696 37 1 0.9650 6.2355 -0.4076 38 1 -3.6537 6.7539 1.6047 39 1 -3.7102 5.4115 0.4371 40 1 -3.5199 5.0728 2.1741 41 1 -1.1236 5.4464 3.2441 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087189700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:33 Heat of formation + Delta-G solvation = -13.599866 kcal Electronic energy + Delta-G solvation = -27779.465210 eV Core-core repulsion = 23824.374217 eV Total energy + Delta-G solvation = -3955.090993 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.22627 -38.95425 -36.89020 -35.57452 -35.51225 -34.43420 -33.45599 -31.66512 -30.45142 -30.34341 -28.72421 -27.11857 -25.01328 -23.73361 -21.93802 -21.54764 -21.27714 -19.24663 -19.13451 -18.02542 -17.63292 -17.01710 -15.82036 -15.65077 -15.52899 -15.37189 -14.66000 -14.49976 -14.40330 -14.11144 -13.74057 -13.22277 -13.06091 -12.96390 -12.88158 -12.60263 -12.41447 -12.16638 -11.90158 -11.75172 -11.66467 -11.53718 -11.32595 -11.24309 -11.13602 -10.95848 -10.73489 -10.59098 -10.48286 -10.35091 -9.73579 -9.60597 -9.37161 -9.15804 -8.98693 -8.35242 -7.91749 -6.49833 -3.94826 0.78419 1.57926 2.34568 2.40334 3.06078 3.17234 3.19494 3.39820 3.80524 4.00835 4.07652 4.30530 4.54570 4.68303 4.77345 4.90794 4.91956 5.05842 5.19270 5.45819 5.52205 5.55758 5.80867 5.85086 6.01948 6.33710 6.41424 6.48695 6.61042 6.68964 6.72098 6.72794 6.77419 6.95541 7.24956 7.28255 7.44116 7.46000 7.62346 7.75516 8.32201 8.96459 9.42099 9.82229 10.46746 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.011250 B = 0.005260 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.322196 B = 5321.520076 C = 5909.429631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.136 3.864 3 N -0.429 5.429 4 C -0.350 4.350 5 H 0.105 0.895 6 C 0.045 3.955 7 N -0.845 5.845 8 Si 0.910 3.090 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.270 1.270 12 C 0.446 3.554 13 O -0.608 6.608 14 C 0.152 3.848 15 H 0.099 0.901 16 C -0.163 4.163 17 N -1.096 6.096 18 S 2.729 3.271 19 O -0.975 6.975 20 O -0.960 6.960 21 C -0.815 4.815 22 C 0.138 3.862 23 N -0.290 5.290 24 N -0.364 5.364 25 C 0.093 3.907 26 C 0.179 3.821 27 H 0.019 0.981 28 H 0.092 0.908 29 H 0.034 0.966 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.270 0.730 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.422 0.578 37 H 0.199 0.801 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.568 7.391 4.563 9.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.013 3.987 3 N -0.146 5.146 4 C -0.477 4.477 5 H 0.123 0.877 6 C -0.162 4.162 7 N -0.482 5.482 8 Si 0.735 3.265 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.195 1.195 12 C 0.233 3.767 13 O -0.496 6.496 14 C 0.042 3.958 15 H 0.117 0.883 16 C -0.222 4.222 17 N -0.858 5.858 18 S 2.816 3.184 19 O -0.965 6.965 20 O -0.950 6.950 21 C -0.913 4.913 22 C -0.051 4.051 23 N -0.109 5.109 24 N -0.141 5.141 25 C -0.048 4.048 26 C 0.025 3.975 27 H 0.038 0.962 28 H 0.111 0.889 29 H 0.053 0.947 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.259 0.741 37 H 0.216 0.784 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -5.474 7.871 4.186 10.462 hybrid contribution 0.178 -0.591 -0.446 0.761 sum -5.296 7.281 3.740 9.749 Atomic orbital electron populations 1.22021 0.96627 1.00457 1.00667 1.21134 0.94507 0.82959 1.00069 1.43807 1.54654 1.11515 1.04646 1.19675 1.40994 1.04447 0.82585 0.87737 1.25177 0.94992 0.96723 0.99307 1.70218 1.22334 1.28061 1.27550 0.86266 0.80515 0.78971 0.80707 1.19640 1.20962 1.19542 1.19862 0.84610 0.88160 0.84064 1.90499 1.59629 1.68047 1.31383 1.20399 0.97089 0.94579 0.83743 0.88341 1.22193 0.93915 1.02802 1.03311 1.55327 1.83456 1.31483 1.15503 1.00705 0.72961 0.72113 0.72628 1.93540 1.86058 1.83699 1.33182 1.93560 1.58573 1.69950 1.72872 1.31674 1.19526 1.32388 1.07745 1.23567 0.94549 0.93789 0.93242 1.77449 1.05788 1.23569 1.04053 1.49070 1.07216 1.51894 1.05960 1.22031 0.74389 1.03529 1.04889 1.22419 0.87731 0.91867 0.95454 0.96189 0.88905 0.94725 0.89614 0.93976 0.91963 0.92265 0.90091 0.91172 0.74149 0.78443 0.90197 0.88635 0.88924 0.79259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.52 37.15 0.35 -2.79 16 2 C 0.14 3.20 5.36 -4.04 -0.02 3.18 16 3 N -0.43 -10.19 2.63 -114.81 -0.30 -10.49 16 4 C -0.35 -8.20 8.64 -14.94 -0.13 -8.33 16 5 H 0.11 2.28 5.30 -52.49 -0.28 2.00 16 6 C 0.04 1.04 4.86 -17.47 -0.08 0.95 16 7 N -0.85 -20.23 8.41 55.50 0.47 -19.76 16 8 Si 0.91 18.29 29.63 -169.99 -5.04 13.25 16 9 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 10 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 11 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 12 C 0.45 10.16 6.88 -10.98 -0.08 10.09 16 13 O -0.61 -15.05 15.63 5.55 0.09 -14.96 16 14 C 0.15 2.88 2.32 -69.08 -0.16 2.72 16 15 H 0.10 1.83 6.45 -51.93 -0.34 1.49 16 16 C -0.16 -2.80 9.28 37.16 0.34 -2.45 16 17 N -1.10 -18.48 5.40 -5.88 -0.03 -18.51 16 18 S 2.73 43.13 5.79 -107.50 -0.62 42.51 16 19 O -0.97 -16.57 17.85 -57.17 -1.02 -17.59 16 20 O -0.96 -16.73 17.08 -57.17 -0.98 -17.71 16 21 C -0.81 -12.43 6.00 -40.01 -0.24 -12.67 16 22 C 0.14 2.18 11.63 -17.36 -0.20 1.98 16 23 N -0.29 -4.68 12.58 30.63 0.39 -4.29 16 24 N -0.36 -4.86 4.01 -68.16 -0.27 -5.13 16 25 C 0.09 0.76 11.47 59.85 0.69 1.45 16 26 C 0.18 2.39 11.23 -17.22 -0.19 2.19 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 2.27 6.16 -51.93 -0.32 1.95 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 2.07 6.14 -51.93 -0.32 1.75 16 31 H 0.04 0.99 7.42 -51.92 -0.39 0.60 16 32 H 0.27 6.18 8.31 -40.82 -0.34 5.85 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.39 6.79 -51.92 -0.35 1.04 16 35 H 0.07 1.11 7.59 -51.93 -0.39 0.71 16 36 H 0.42 6.98 8.09 -34.47 -0.28 6.70 16 37 H 0.20 2.72 8.06 -52.49 -0.42 2.30 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.19 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 354.75 15.07 5.35 5.35 Total: -1.00 -32.33 354.75 -6.88 -39.21 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -5.18 Total: 11.80 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 0.28 Total: -3.68 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.24 Total: -58.19 kcal Atomic # 8 Polarization: -48.35 SS G_CDS: -1.91 Total: -50.26 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.04 Total: 13.25 kcal Atomic # 16 Polarization: 43.13 SS G_CDS: -0.62 Total: 42.51 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.33 -6.88 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087189700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.610 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds