Wall clock time and date at job start Tue Mar 31 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86800 * 120.00030 * 2 1 4 4 H 1.48506 * 109.47322 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47155 * 299.99800 * 3 2 1 6 6 H 1.48501 * 109.47415 * 59.99758 * 3 2 1 7 7 C 1.37882 * 120.00571 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00539 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99260 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46726 * 180.02562 * 9 7 2 11 11 C 1.46503 * 120.00133 * 89.99895 * 10 9 7 12 12 C 1.52999 * 109.47169 * 89.99968 * 11 10 9 13 13 C 1.53002 * 117.51770 * 116.28251 * 12 11 10 14 14 C 1.52999 * 117.49757 * 184.91362 * 12 11 10 15 15 C 1.34780 * 119.99770 * 269.99564 * 10 9 7 16 16 O 1.21700 * 120.00047 * 359.97438 * 15 10 9 17 17 C 1.46425 * 120.00097 * 180.02562 * 15 10 9 18 18 C 1.34799 * 120.00177 * 186.51998 * 17 15 10 19 19 C 1.47207 * 120.00190 * 9.80216 * 18 17 15 20 20 C 1.39862 * 120.16957 * 49.18672 * 19 18 17 21 21 C 1.37865 * 119.82525 * 179.74739 * 20 19 18 22 22 C 1.38422 * 120.17189 * 0.53266 * 21 20 19 23 23 C 1.38379 * 120.34503 * 359.74618 * 22 21 20 24 24 C 1.37904 * 120.17000 * 359.97090 * 23 22 21 25 25 N 1.48024 * 120.08890 * 180.02562 * 24 23 22 26 26 O 1.21805 * 120.00065 * 354.85432 * 25 24 23 27 27 O 1.21794 * 120.00714 * 174.85303 * 25 24 23 28 28 H 0.97006 * 120.00164 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47582 * 59.99919 * 9 7 2 30 30 H 1.09004 * 109.47217 * 299.99649 * 9 7 2 31 31 H 1.08993 * 109.46910 * 329.99621 * 11 10 9 32 32 H 1.09002 * 109.47087 * 209.99629 * 11 10 9 33 33 H 1.09002 * 115.55264 * 330.58092 * 12 11 10 34 34 H 1.09005 * 117.49765 * 214.96987 * 13 12 11 35 35 H 1.08995 * 117.49891 * 359.97438 * 13 12 11 36 36 H 1.08999 * 117.49866 * 359.97410 * 14 12 11 37 37 H 1.08999 * 117.49861 * 144.99975 * 14 12 11 38 38 H 1.08002 * 119.99778 * 6.51496 * 17 15 10 39 39 H 1.08005 * 120.00274 * 189.80503 * 18 17 15 40 40 H 1.07999 * 120.08106 * 0.02562 * 20 19 18 41 41 H 1.08005 * 119.91361 * 180.25039 * 21 20 19 42 42 H 1.08001 * 119.82414 * 179.72036 * 22 21 20 43 43 H 1.07997 * 119.91465 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 2.6782 -4.1688 1.2711 12 6 1.7472 -5.2998 1.7126 13 6 2.3381 -6.7084 1.8000 14 6 2.0078 -5.9366 3.0792 15 6 2.6418 -4.1254 -1.1649 16 8 2.2467 -3.6637 -2.2194 17 6 3.5929 -5.2386 -1.1638 18 6 4.1325 -5.6654 -2.3230 19 6 3.9392 -4.8850 -3.5562 20 6 4.1836 -3.5080 -3.5622 21 6 4.0053 -2.7849 -4.7224 22 6 3.5749 -3.4165 -5.8765 23 6 3.3254 -4.7776 -5.8771 24 6 3.5047 -5.5156 -4.7260 25 7 3.2378 -6.9716 -4.7288 26 8 2.7705 -7.5032 -5.7201 27 8 3.4855 -7.6381 -3.7400 28 1 -0.4851 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.6854 -3.3868 2.0303 32 1 3.6877 -4.5589 1.1417 33 1 0.7101 -5.2083 1.3896 34 1 1.6898 -7.5435 1.5345 35 1 3.3903 -6.8296 1.5425 36 1 2.8428 -5.5500 3.6635 37 1 1.1423 -6.2640 3.6552 38 1 3.8622 -5.7178 -0.2341 39 1 4.7067 -6.5798 -2.3471 40 1 4.5155 -3.0132 -2.6614 41 1 4.1975 -1.7221 -4.7296 42 1 3.4327 -2.8439 -6.7811 43 1 2.9902 -5.2634 -6.7815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097299792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:09 Heat of formation + Delta-G solvation = 44.709965 kcal Electronic energy + Delta-G solvation = -28446.084155 eV Core-core repulsion = 24461.618059 eV Total energy + Delta-G solvation = -3984.466096 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.04859 -39.85633 -38.77761 -37.24095 -36.47780 -34.72956 -33.69771 -32.62895 -31.78735 -30.08481 -27.99204 -26.55224 -26.07896 -24.32266 -22.88313 -22.32415 -22.21910 -21.06506 -20.53140 -19.08011 -18.52518 -18.02346 -17.41227 -17.18525 -16.54894 -15.95467 -15.54578 -15.15078 -15.00878 -14.61350 -14.50709 -14.23370 -13.83314 -13.56314 -13.16758 -12.85598 -12.75049 -12.31481 -12.21701 -11.95920 -11.60457 -11.44844 -11.42022 -11.31612 -11.28416 -11.03392 -10.96539 -10.92275 -10.70733 -10.41033 -10.20006 -9.94120 -9.84390 -9.70146 -9.40869 -9.12817 -8.53188 -8.27013 -7.76241 -6.13425 -4.18836 -0.02215 0.83767 1.55444 1.62351 1.76323 3.21181 3.28980 3.31424 3.51724 3.73133 3.80961 3.98760 4.35424 4.39068 4.53455 4.81449 4.84133 4.97491 5.00840 5.01361 5.15792 5.20690 5.22476 5.26825 5.39547 5.52540 5.68606 5.76122 5.80189 5.85446 5.96694 5.98770 6.02884 6.15159 6.17921 6.25655 6.34497 6.41238 6.43346 6.70057 6.99803 7.34722 7.42776 7.82141 7.82590 8.12850 8.29004 8.78476 8.95130 9.46400 10.94607 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.009325 B = 0.004844 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.865692 B = 5778.511931 C = 8164.282307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.245 3.755 10 N -0.582 5.582 11 C 0.140 3.860 12 C -0.167 4.167 13 C -0.183 4.183 14 C -0.176 4.176 15 C 0.527 3.473 16 O -0.535 6.535 17 C -0.171 4.171 18 C -0.067 4.067 19 C 0.027 3.973 20 C -0.044 4.044 21 C -0.072 4.072 22 C -0.116 4.116 23 C -0.071 4.071 24 C -0.042 4.042 25 N 0.039 4.961 26 O -0.177 6.177 27 O -0.167 6.167 28 H 0.263 0.737 29 H 0.043 0.957 30 H 0.033 0.967 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.154 0.846 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.849 -9.994 -2.980 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.076 0.924 9 C 0.126 3.874 10 N -0.311 5.311 11 C 0.016 3.984 12 C -0.186 4.186 13 C -0.220 4.220 14 C -0.214 4.214 15 C 0.315 3.685 16 O -0.415 6.415 17 C -0.192 4.192 18 C -0.087 4.087 19 C 0.026 3.974 20 C -0.063 4.063 21 C -0.090 4.090 22 C -0.135 4.135 23 C -0.090 4.090 24 C -0.126 4.126 25 N 0.555 4.445 26 O -0.389 6.389 27 O -0.381 6.381 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.155 0.845 39 H 0.171 0.829 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.562 -8.908 -3.507 13.531 hybrid contribution 0.053 0.522 0.263 0.587 sum 9.615 -8.385 -3.243 13.164 Atomic orbital electron populations 1.69937 1.06015 1.26961 1.50214 1.24927 0.94837 0.99172 0.95065 0.86476 0.79928 0.83495 0.77693 1.19812 1.20905 1.20911 1.21408 0.93249 0.90487 1.51277 0.92437 1.19316 0.87495 0.82029 0.98521 1.48168 1.44960 1.34064 1.03954 1.21088 0.95241 0.94830 0.87273 1.22922 1.01467 0.93955 1.00294 1.23047 1.01462 0.95258 1.02186 1.22904 1.03378 1.04367 0.90708 1.18307 0.82664 0.83036 0.84472 1.90822 1.58637 1.61914 1.30168 1.23495 0.98653 0.98634 0.98395 1.22459 0.98946 0.97154 0.90142 1.18785 0.93541 0.93918 0.91171 1.21236 0.96067 0.90523 0.98425 1.21438 0.94709 1.00817 0.92054 1.21153 0.99988 0.92913 0.99404 1.20770 0.97266 0.94320 0.96657 1.21112 1.14087 0.79622 0.97734 1.43576 0.97563 1.03599 0.99790 1.94500 1.45507 1.74092 1.24822 1.94459 1.55501 1.63431 1.24704 0.92708 0.93852 0.94921 0.89314 0.91229 0.87463 0.89022 0.88889 0.88733 0.88984 0.84504 0.82881 0.84211 0.84261 0.84171 0.83610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -14.02 9.39 -34.44 -0.32 -14.34 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.25 6.10 5.16 -5.19 -0.03 6.08 16 10 N -0.58 -11.58 2.46 -176.70 -0.43 -12.01 16 11 C 0.14 2.15 5.36 -4.04 -0.02 2.13 16 12 C -0.17 -2.29 6.01 -90.62 -0.54 -2.83 16 13 C -0.18 -2.02 9.71 -26.73 -0.26 -2.28 16 14 C -0.18 -1.93 10.25 -26.73 -0.27 -2.20 16 15 C 0.53 10.28 6.86 -12.96 -0.09 10.20 16 16 O -0.54 -12.19 11.96 5.19 0.06 -12.13 16 17 C -0.17 -2.56 9.07 -37.51 -0.34 -2.90 16 18 C -0.07 -0.96 7.92 -37.16 -0.29 -1.26 16 19 C 0.03 0.43 4.33 -105.06 -0.46 -0.03 16 20 C -0.04 -0.67 6.74 -39.11 -0.26 -0.93 16 21 C -0.07 -0.96 10.03 -39.65 -0.40 -1.35 16 22 C -0.12 -1.38 10.04 -39.46 -0.40 -1.78 16 23 C -0.07 -0.94 9.55 -39.65 -0.38 -1.32 16 24 C -0.04 -0.66 6.88 -79.48 -0.55 -1.20 16 25 N 0.04 0.64 4.45 34.19 0.15 0.80 16 26 O -0.18 -2.94 18.46 -29.46 -0.54 -3.48 16 27 O -0.17 -2.74 15.81 -29.46 -0.47 -3.20 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 30 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 32 H 0.07 0.89 5.92 -51.93 -0.31 0.58 16 33 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 0.90 7.25 -51.93 -0.38 0.53 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.14 1.64 5.02 -52.49 -0.26 1.38 16 39 H 0.15 1.85 6.77 -52.48 -0.36 1.50 16 40 H 0.14 2.19 7.49 -52.49 -0.39 1.79 16 41 H 0.14 1.57 8.06 -52.48 -0.42 1.14 16 42 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.15 1.66 7.62 -52.49 -0.40 1.26 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -32.02 368.48 -10.07 -42.09 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.40 Total: 3.97 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -4.71 Total: -12.43 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.45 Total: -36.16 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.95 Total: -18.81 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.02 -10.07 -42.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097299792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.796 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds