Wall clock time and date at job start Tue Mar 31 2020 05:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00259 * 2 1 4 4 H 1.48510 * 109.46711 * 269.99613 * 3 2 1 5 5 H 1.48493 * 109.47352 * 29.99347 * 3 2 1 6 6 H 1.48495 * 109.47482 * 149.99976 * 3 2 1 7 7 C 1.37883 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99425 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99993 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.46911 * 180.02562 * 9 7 2 11 11 C 1.46495 * 120.00262 * 90.00339 * 10 9 7 12 12 C 1.52996 * 109.47343 * 89.99634 * 11 10 9 13 13 C 1.53002 * 117.49888 * 116.25574 * 12 11 10 14 14 C 1.53000 * 117.50107 * 184.91336 * 12 11 10 15 15 C 1.34779 * 119.99890 * 270.00119 * 10 9 7 16 16 O 1.21283 * 120.00027 * 359.97438 * 15 10 9 17 17 C 1.50695 * 120.00061 * 180.02562 * 15 10 9 18 18 N 1.46904 * 109.47288 * 180.02562 * 17 15 10 19 19 C 1.46471 * 110.99622 * 295.85058 * 18 17 15 20 20 C 1.53183 * 109.90011 * 162.99694 * 19 18 17 21 21 S 1.81817 * 108.67272 * 62.63966 * 20 19 18 22 22 O 1.42101 * 108.70051 * 193.42822 * 21 20 19 23 23 O 1.42101 * 108.83143 * 61.98316 * 21 20 19 24 24 C 1.81814 * 101.02221 * 307.68126 * 21 20 19 25 25 C 1.46471 * 111.00066 * 169.99784 * 18 17 15 26 26 H 0.97003 * 120.00056 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47071 * 60.00482 * 9 7 2 28 28 H 1.08995 * 109.47527 * 299.99862 * 9 7 2 29 29 H 1.09002 * 109.47043 * 329.99530 * 11 10 9 30 30 H 1.09004 * 109.47109 * 210.00084 * 11 10 9 31 31 H 1.09002 * 115.54951 * 330.58548 * 12 11 10 32 32 H 1.09000 * 117.49996 * 215.00804 * 13 12 11 33 33 H 1.08999 * 117.49664 * 0.02562 * 13 12 11 34 34 H 1.09008 * 117.49673 * 359.97438 * 14 12 11 35 35 H 1.08999 * 117.49959 * 144.99502 * 14 12 11 36 36 H 1.09006 * 109.46806 * 299.99370 * 17 15 10 37 37 H 1.08996 * 109.47545 * 59.99808 * 17 15 10 38 38 H 1.08993 * 109.40394 * 283.13669 * 19 18 17 39 39 H 1.09008 * 109.40145 * 42.87066 * 19 18 17 40 40 H 1.08992 * 109.60589 * 302.88563 * 20 19 18 41 41 H 1.08996 * 109.60514 * 182.39150 * 20 19 18 42 42 H 1.09005 * 109.60106 * 292.56352 * 24 21 20 43 43 H 1.08993 * 109.60450 * 172.07703 * 24 21 20 44 44 H 1.09001 * 109.39658 * 317.12643 * 25 18 17 45 45 H 1.08998 * 109.39586 * 76.86697 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0462 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 2.6779 -4.1690 1.2710 12 6 1.7468 -5.2999 1.7125 13 6 2.3379 -6.7085 1.7991 14 6 2.0073 -5.9368 3.0790 15 6 2.6417 -4.1255 -1.1649 16 8 2.2481 -3.6653 -2.2157 17 6 3.6205 -5.2713 -1.1637 18 7 3.9403 -5.6436 -2.5483 19 6 2.7540 -6.1485 -3.2434 20 6 2.9888 -6.1289 -4.7570 21 16 4.3678 -7.2480 -5.1467 22 8 4.7911 -7.0020 -6.4807 23 8 4.0098 -8.5683 -4.7622 24 6 5.6453 -6.6352 -4.0073 25 6 5.0593 -6.5877 -2.5929 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6239 -2.5567 0.8902 29 1 2.6851 -3.3871 2.0304 30 1 3.6874 -4.5591 1.1416 31 1 0.7098 -5.2083 1.3894 32 1 1.6898 -7.5435 1.5329 33 1 3.3902 -6.8294 1.5420 34 1 2.8424 -5.5503 3.6634 35 1 1.1417 -6.2641 3.6550 36 1 4.5328 -4.9692 -0.6491 37 1 3.1794 -6.1255 -0.6500 38 1 2.5530 -7.1702 -2.9213 39 1 1.8975 -5.5190 -3.0018 40 1 3.2381 -5.1168 -5.0753 41 1 2.0885 -6.4653 -5.2711 42 1 5.9546 -5.6344 -4.3088 43 1 6.5037 -7.3066 -4.0252 44 1 5.8305 -6.2684 -1.8919 45 1 4.7065 -7.5805 -2.3136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103437946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:13 Heat of formation + Delta-G solvation = -59.167718 kcal Electronic energy + Delta-G solvation = -27363.541476 eV Core-core repulsion = 23510.014856 eV Total energy + Delta-G solvation = -3853.526620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.79426 -38.05339 -37.19804 -36.89531 -36.15696 -34.47530 -32.63577 -32.00378 -31.38488 -28.21789 -26.80589 -25.50443 -24.27231 -22.74420 -22.40304 -21.44836 -20.76213 -18.93479 -18.57950 -17.18462 -16.80399 -16.54649 -16.42171 -15.92584 -15.81626 -15.59692 -15.09221 -14.81772 -14.74423 -14.31512 -14.07446 -13.91274 -13.28224 -12.99723 -12.74568 -12.51745 -12.42608 -12.30100 -12.26791 -12.14354 -12.05334 -11.87452 -11.70427 -11.53859 -11.45231 -11.26542 -10.92037 -10.82001 -10.65665 -10.41994 -10.22301 -10.14631 -9.92692 -9.65873 -9.04988 -8.48769 -8.47421 -7.75059 -6.08708 -4.13383 -0.10418 2.50154 3.21967 3.28478 3.29869 3.35057 3.37621 3.49565 3.73804 3.88087 4.00852 4.32518 4.41565 4.49055 4.68365 4.69291 4.82779 4.89034 4.93211 4.97508 5.08602 5.22965 5.26118 5.29867 5.29946 5.36488 5.45528 5.51987 5.58656 5.74576 5.77363 5.88994 5.89920 5.99796 6.08369 6.33879 6.57083 6.78969 7.01601 7.37109 7.46934 7.87473 8.18160 8.32336 8.84719 9.01223 9.52005 10.99388 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.011879 B = 0.003684 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.535943 B = 7598.991021 C = 9238.892721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.248 3.752 10 N -0.594 5.594 11 C 0.141 3.859 12 C -0.166 4.166 13 C -0.188 4.188 14 C -0.175 4.175 15 C 0.507 3.493 16 O -0.523 6.523 17 C 0.039 3.961 18 N -0.539 5.539 19 C 0.060 3.940 20 C -0.583 4.583 21 S 2.408 3.592 22 O -0.947 6.947 23 O -0.945 6.945 24 C -0.595 4.595 25 C 0.066 3.934 26 H 0.263 0.737 27 H 0.043 0.957 28 H 0.032 0.968 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.121 0.879 40 H 0.147 0.853 41 H 0.136 0.864 42 H 0.144 0.856 43 H 0.135 0.865 44 H 0.098 0.902 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.738 -15.989 0.546 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.565 4.565 8 H 0.075 0.925 9 C 0.129 3.871 10 N -0.326 5.326 11 C 0.017 3.983 12 C -0.185 4.185 13 C -0.224 4.224 14 C -0.212 4.212 15 C 0.293 3.707 16 O -0.399 6.399 17 C -0.091 4.091 18 N -0.264 5.264 19 C -0.069 4.069 20 C -0.714 4.714 21 S 2.591 3.409 22 O -0.944 6.944 23 O -0.942 6.942 24 C -0.725 4.725 25 C -0.063 4.063 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.139 0.861 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.162 0.838 43 H 0.153 0.847 44 H 0.116 0.884 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.546 -15.892 -0.886 18.066 hybrid contribution 0.244 0.977 1.036 1.445 sum 8.790 -14.915 0.150 17.313 Atomic orbital electron populations 1.69925 1.05999 1.27040 1.50373 1.24920 0.94852 0.99198 0.95026 0.86511 0.79643 0.83085 0.78242 1.20550 1.21181 1.19951 1.21412 0.93328 0.90632 1.51160 0.92467 1.19281 0.87386 0.82043 0.98400 1.48199 1.45758 1.34813 1.03789 1.21029 0.94898 0.94753 0.87653 1.22956 1.01509 0.93738 1.00306 1.23068 1.01340 0.95314 1.02728 1.22904 1.03408 1.04213 0.90691 1.20062 0.82315 0.83929 0.84435 1.90654 1.57744 1.60926 1.30575 1.22079 1.00521 0.97954 0.88578 1.60755 1.07001 1.42732 1.15932 1.21934 0.95419 1.00155 0.89345 1.30100 1.18533 1.17729 1.05006 1.08256 0.79369 0.76974 0.76308 1.93586 1.81165 1.86556 1.33115 1.93575 1.82670 1.33567 1.84363 1.30182 1.16923 1.14038 1.11382 1.21755 0.94518 0.95450 0.94584 0.92708 0.93889 0.94953 0.89311 0.91588 0.87326 0.89149 0.89009 0.88701 0.88942 0.87970 0.91358 0.93112 0.86116 0.83528 0.84594 0.83824 0.84667 0.88376 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.30 9.39 -34.44 -0.32 -14.62 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.14 16 9 C 0.25 6.09 5.16 -5.19 -0.03 6.06 16 10 N -0.59 -11.33 2.46 -175.06 -0.43 -11.76 16 11 C 0.14 2.03 5.49 -4.05 -0.02 2.01 16 12 C -0.17 -2.05 5.95 -90.62 -0.54 -2.58 16 13 C -0.19 -1.80 9.17 -26.69 -0.24 -2.04 16 14 C -0.17 -1.74 10.25 -26.70 -0.27 -2.01 16 15 C 0.51 9.37 7.22 -10.99 -0.08 9.29 16 16 O -0.52 -11.80 13.91 5.55 0.08 -11.73 16 17 C 0.04 0.50 4.01 -4.98 -0.02 0.48 16 18 N -0.54 -6.56 4.19 -236.56 -0.99 -7.55 16 19 C 0.06 0.74 4.94 -3.96 -0.02 0.72 16 20 C -0.58 -6.20 6.58 37.25 0.25 -5.95 16 21 S 2.41 24.98 5.34 -107.50 -0.57 24.40 16 22 O -0.95 -12.98 18.11 -57.81 -1.05 -14.02 16 23 O -0.94 -12.25 18.10 -57.81 -1.05 -13.29 16 24 C -0.60 -4.76 6.58 37.25 0.24 -4.51 16 25 C 0.07 0.58 5.41 -3.96 -0.02 0.56 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 27 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 28 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.07 0.77 6.17 -51.93 -0.32 0.45 16 31 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.76 7.87 -51.93 -0.41 0.35 16 34 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.11 7.10 -51.93 -0.37 0.74 16 37 H 0.07 0.74 6.82 -51.93 -0.35 0.38 16 38 H 0.05 0.54 7.93 -51.93 -0.41 0.13 16 39 H 0.12 1.83 5.61 -51.92 -0.29 1.54 16 40 H 0.15 1.60 8.14 -51.93 -0.42 1.18 16 41 H 0.14 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.10 0.70 7.77 -51.93 -0.40 0.30 16 45 H 0.06 0.45 7.93 -51.93 -0.41 0.04 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -36.24 373.88 -10.96 -47.20 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.12 Total: 0.91 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.18 Total: -10.99 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.68 Total: -44.45 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -2.02 Total: -39.04 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 24.98 SS G_CDS: -0.57 Total: 24.40 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.24 -10.96 -47.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.968 kcal (2) G-P(sol) polarization free energy of solvation -36.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds