Wall clock time and date at job start Tue Mar 31 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86792 * 119.99844 * 2 1 4 4 H 1.48504 * 109.47169 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47393 * 299.99864 * 3 2 1 6 6 H 1.48498 * 109.47347 * 60.00095 * 3 2 1 7 7 C 1.38951 * 119.99613 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99510 * 204.15875 * 7 2 1 9 9 N 1.37094 * 120.00387 * 24.16052 * 7 2 1 10 10 C 1.34778 * 120.00197 * 52.33029 * 9 7 2 11 11 O 1.21291 * 120.00103 * 179.97438 * 10 9 7 12 12 C 1.50700 * 119.99529 * 0.02562 * 10 9 7 13 13 N 1.46905 * 109.46917 * 179.97438 * 12 10 9 14 14 C 1.46472 * 110.99743 * 295.85070 * 13 12 10 15 15 C 1.53184 * 109.90141 * 162.99952 * 14 13 12 16 16 S 1.81816 * 108.67445 * 62.63592 * 15 14 13 17 17 O 1.42108 * 108.70070 * 193.42709 * 16 15 14 18 18 O 1.42098 * 108.82530 * 61.98899 * 16 15 14 19 19 C 1.81816 * 101.02107 * 307.68340 * 16 15 14 20 20 C 1.46467 * 111.00136 * 169.99882 * 13 12 10 21 21 C 1.46501 * 120.00039 * 232.33509 * 9 7 2 22 22 C 1.55240 * 110.58252 * 49.67605 * 21 9 7 23 23 C 1.54889 * 102.58988 * 203.34154 * 22 21 9 24 24 C 1.54266 * 104.31076 * 37.92997 * 23 22 21 25 25 C 1.53874 * 106.60376 * 336.32377 * 24 23 22 26 26 H 0.96999 * 119.99893 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46737 * 299.99063 * 12 10 9 28 28 H 1.08991 * 109.47513 * 59.99755 * 12 10 9 29 29 H 1.09001 * 109.40326 * 283.13350 * 14 13 12 30 30 H 1.09008 * 109.40127 * 42.87055 * 14 13 12 31 31 H 1.09000 * 109.59908 * 302.88257 * 15 14 13 32 32 H 1.08995 * 109.60185 * 182.39641 * 15 14 13 33 33 H 1.08994 * 109.60294 * 292.55755 * 19 16 15 34 34 H 1.09007 * 109.60070 * 172.07376 * 19 16 15 35 35 H 1.09005 * 109.39899 * 317.12406 * 20 13 12 36 36 H 1.09002 * 109.40183 * 76.86578 * 20 13 12 37 37 H 1.09000 * 110.43631 * 172.25984 * 21 9 7 38 38 H 1.09002 * 110.89871 * 85.04664 * 22 21 9 39 39 H 1.08999 * 110.76461 * 321.56986 * 22 21 9 40 40 H 1.08996 * 110.48196 * 279.18567 * 23 22 21 41 41 H 1.08995 * 110.48745 * 156.67846 * 23 22 21 42 42 H 1.08993 * 110.03120 * 95.61230 * 24 23 22 43 43 H 1.09001 * 110.03068 * 216.99145 * 24 23 22 44 44 H 1.08998 * 110.03122 * 119.28432 * 25 24 23 45 45 H 1.08990 * 110.03586 * 240.66960 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0180 -1.2442 0.3834 9 7 1.4135 -2.3389 -0.4849 10 6 0.8576 -2.3362 -1.7127 11 8 0.3313 -3.3410 -2.1423 12 6 0.8912 -1.0851 -2.5521 13 7 0.2252 -1.3394 -3.8367 14 6 0.9510 -2.3467 -4.6138 15 6 0.0488 -2.9010 -5.7207 16 16 -0.3839 -1.5454 -6.8525 17 8 -1.4531 -1.9715 -7.6860 18 8 0.8064 -1.0470 -7.4473 19 6 -1.0152 -0.3045 -5.6831 20 6 0.0277 -0.0936 -4.5812 21 6 1.3813 -3.5552 0.3310 22 6 0.8627 -3.2403 1.7600 23 6 1.4527 -4.4024 2.5970 24 6 2.8552 -4.6310 1.9965 25 6 2.8099 -4.0925 0.5558 26 1 -0.4850 0.8400 -0.0004 27 1 0.3743 -0.2816 -2.0274 28 1 1.9265 -0.7953 -2.7312 29 1 1.8347 -1.8915 -5.0610 30 1 1.2579 -3.1598 -3.9558 31 1 -0.8589 -3.3136 -5.2803 32 1 0.5789 -3.6799 -6.2688 33 1 -1.9469 -0.6585 -5.2420 34 1 -1.1896 0.6357 -6.2064 35 1 -0.3175 0.6843 -3.9002 36 1 0.9722 0.2133 -5.0306 37 1 0.7583 -4.3144 -0.1418 38 1 -0.2267 -3.2565 1.7906 39 1 1.2458 -2.2808 2.1074 40 1 0.8412 -5.2983 2.4900 41 1 1.5288 -4.1166 3.6461 42 1 3.6021 -4.0875 2.5750 43 1 3.0899 -5.6955 1.9908 44 1 3.5348 -3.2875 0.4352 45 1 3.0229 -4.8953 -0.1498 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125019749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:35 Heat of formation + Delta-G solvation = -89.479727 kcal Electronic energy + Delta-G solvation = -28098.534927 eV Core-core repulsion = 24243.693880 eV Total energy + Delta-G solvation = -3854.841047 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -39.32147 -37.90919 -36.87995 -36.24838 -35.93537 -34.32945 -31.72554 -31.61674 -30.72411 -28.03749 -27.42888 -25.53662 -24.57892 -23.88102 -21.27840 -19.89292 -19.72273 -19.52166 -18.67531 -16.79902 -16.75518 -16.17214 -15.96526 -15.64284 -15.36615 -15.19094 -14.91724 -14.66857 -14.35893 -13.93790 -13.83624 -13.25933 -12.82479 -12.74240 -12.66311 -12.35182 -12.15461 -12.02842 -11.95142 -11.83200 -11.73821 -11.64896 -11.58944 -11.22315 -11.13062 -10.73587 -10.68631 -10.66117 -10.48237 -10.43751 -10.41588 -9.97995 -9.90347 -9.69439 -8.92593 -8.44862 -7.95884 -7.38403 -6.56523 -4.34736 0.14744 2.74025 2.96833 3.10668 3.13446 3.70916 3.77389 3.94158 4.01268 4.20882 4.63029 4.68757 4.78580 4.85281 4.96516 5.20236 5.27304 5.28883 5.30546 5.39394 5.48401 5.79322 5.82931 5.98005 6.02099 6.10178 6.15385 6.19630 6.22068 6.25938 6.28934 6.38823 6.45295 6.45595 6.63076 6.69874 6.87602 7.00561 7.18055 7.23341 7.35072 7.39510 7.86651 8.51789 8.77241 9.48554 9.91065 10.45093 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.004181 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.712929 B = 6696.077927 C = 7959.344539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.049 3.951 3 Si 0.896 3.104 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.338 4.338 8 H 0.084 0.916 9 N -0.446 5.446 10 C 0.515 3.485 11 O -0.595 6.595 12 C 0.047 3.953 13 N -0.539 5.539 14 C 0.060 3.940 15 C -0.579 4.579 16 S 2.405 3.595 17 O -0.953 6.953 18 O -0.947 6.947 19 C -0.591 4.591 20 C 0.066 3.934 21 C 0.134 3.866 22 C -0.114 4.114 23 C -0.125 4.125 24 C -0.117 4.117 25 C -0.130 4.130 26 H 0.271 0.729 27 H 0.130 0.870 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.119 0.881 31 H 0.143 0.857 32 H 0.131 0.869 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.773 -1.093 -3.044 3.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.158 4.158 3 Si 0.721 3.279 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.466 4.466 8 H 0.101 0.899 9 N -0.166 5.166 10 C 0.305 3.695 11 O -0.480 6.480 12 C -0.081 4.081 13 N -0.265 5.265 14 C -0.069 4.069 15 C -0.711 4.711 16 S 2.589 3.411 17 O -0.950 6.950 18 O -0.944 6.944 19 C -0.721 4.721 20 C -0.063 4.063 21 C 0.030 3.970 22 C -0.153 4.153 23 C -0.163 4.163 24 C -0.155 4.155 25 C -0.169 4.169 26 H 0.082 0.918 27 H 0.148 0.852 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.137 0.863 31 H 0.162 0.838 32 H 0.149 0.851 33 H 0.160 0.840 34 H 0.150 0.850 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.989 -1.604 -4.078 4.493 hybrid contribution 0.874 1.301 0.874 1.795 sum 1.863 -0.303 -3.204 3.719 Atomic orbital electron populations 1.70103 1.06061 1.28000 1.43731 1.25573 0.94968 1.00027 0.95225 0.86367 0.80762 0.82359 0.78418 1.18850 1.20121 1.20467 1.19178 0.97780 0.84801 1.44844 0.89860 1.43317 1.52036 1.09691 1.11507 1.19984 0.79493 0.88175 0.81892 1.90472 1.49236 1.35544 1.72781 1.22244 0.98250 1.00097 0.87545 1.60848 1.52490 1.08440 1.04690 1.21922 0.92536 0.97762 0.94642 1.30069 1.11377 1.16936 1.12696 1.08266 0.75733 0.79368 0.77708 1.93564 1.55956 1.81367 1.64106 1.93563 1.47181 1.79355 1.74333 1.30150 1.10897 1.17428 1.13643 1.21717 0.96101 0.93620 0.94904 1.21843 0.94595 0.89056 0.91479 1.22665 0.99516 0.98554 0.94536 1.22320 0.96234 0.98877 0.98876 1.22029 0.97315 0.99652 0.96500 1.22415 0.99083 0.99970 0.95425 0.91841 0.85247 0.92831 0.93754 0.86257 0.83836 0.85083 0.83993 0.84982 0.88469 0.92945 0.90187 0.92555 0.89678 0.92503 0.92450 0.92381 0.92865 0.91095 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.05 11.61 55.50 0.64 -19.40 16 2 C 0.05 1.11 3.40 -17.46 -0.06 1.05 16 3 Si 0.90 17.45 29.62 -169.99 -5.03 12.41 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.34 -7.64 6.87 -14.93 -0.10 -7.74 16 8 H 0.08 1.87 7.17 -52.48 -0.38 1.49 16 9 N -0.45 -10.08 2.45 -105.77 -0.26 -10.34 16 10 C 0.51 11.90 6.74 -10.98 -0.07 11.83 16 11 O -0.60 -14.61 13.71 5.55 0.08 -14.54 16 12 C 0.05 0.97 3.84 -4.97 -0.02 0.95 16 13 N -0.54 -9.51 4.19 -236.56 -0.99 -10.51 16 14 C 0.06 0.98 4.94 -3.96 -0.02 0.96 16 15 C -0.58 -7.71 6.58 37.25 0.25 -7.47 16 16 S 2.41 31.87 5.34 -107.50 -0.57 31.30 16 17 O -0.95 -15.12 18.11 -57.81 -1.05 -16.17 16 18 O -0.95 -15.04 18.10 -57.81 -1.05 -16.09 16 19 C -0.59 -7.05 6.58 37.25 0.24 -6.80 16 20 C 0.07 0.95 5.40 -3.97 -0.02 0.93 16 21 C 0.13 2.76 3.24 -66.08 -0.21 2.54 16 22 C -0.11 -2.19 6.39 -24.55 -0.16 -2.35 16 23 C -0.12 -1.91 6.82 -25.07 -0.17 -2.08 16 24 C -0.12 -1.73 6.80 -25.61 -0.17 -1.91 16 25 C -0.13 -2.28 6.44 -25.61 -0.16 -2.44 16 26 H 0.27 6.11 8.31 -40.82 -0.34 5.77 16 27 H 0.13 2.82 4.68 -51.93 -0.24 2.57 16 28 H 0.05 1.05 8.09 -51.93 -0.42 0.63 16 29 H 0.04 0.66 7.93 -51.93 -0.41 0.25 16 30 H 0.12 2.21 5.61 -51.92 -0.29 1.92 16 31 H 0.14 1.90 8.14 -51.93 -0.42 1.48 16 32 H 0.13 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.14 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.13 1.24 8.14 -51.92 -0.42 0.81 16 35 H 0.10 1.38 7.77 -51.93 -0.40 0.98 16 36 H 0.05 0.71 7.93 -51.93 -0.41 0.30 16 37 H 0.08 1.76 7.01 -51.93 -0.36 1.40 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.79 7.01 -51.93 -0.36 1.42 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.30 6.85 -51.93 -0.36 0.94 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -29.98 358.27 -10.52 -40.51 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -7.00 Total: 9.97 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.69 Total: -12.54 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: -0.61 Total: -40.25 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -2.02 Total: -46.80 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.41 kcal Atomic # 16 Polarization: 31.87 SS G_CDS: -0.57 Total: 31.30 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.98 -10.52 -40.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125019749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.974 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds