Wall clock time and date at job start Tue Mar 31 2020 05:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.47044 * 2 1 4 4 C 1.46494 * 120.00286 * 270.00083 * 3 2 1 5 5 C 1.50705 * 109.46951 * 270.00305 * 4 3 2 6 6 H 1.08002 * 120.00029 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00020 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99959 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00089 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47069 * 59.99871 * 9 7 5 11 11 H 1.48498 * 109.47420 * 180.02562 * 9 7 5 12 12 H 1.48510 * 109.46910 * 300.00123 * 9 7 5 13 13 C 1.34778 * 119.99888 * 89.99819 * 3 2 1 14 14 O 1.21280 * 120.00317 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00035 * 0.02562 * 13 3 2 16 16 N 1.46497 * 109.47238 * 179.97438 * 15 13 3 17 17 S 1.65596 * 120.00063 * 164.99854 * 16 15 13 18 18 O 1.42098 * 106.40393 * 311.45899 * 17 16 15 19 19 O 1.42102 * 106.40340 * 178.53898 * 17 16 15 20 20 C 1.76199 * 107.21928 * 64.99967 * 17 16 15 21 21 C 1.34675 * 125.98796 * 89.99975 * 20 17 16 22 22 N 1.36881 * 106.81313 * 179.97438 * 21 20 17 23 23 C 1.46506 * 126.39256 * 179.97438 * 22 21 20 24 24 C 1.35034 * 107.20901 * 0.26255 * 22 21 20 25 25 N 1.30503 * 108.70195 * 359.56520 * 24 22 21 26 26 H 1.08999 * 109.46894 * 60.00088 * 1 2 3 27 27 H 1.09000 * 109.46714 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46879 * 299.99835 * 1 2 3 29 29 H 1.09000 * 109.47310 * 239.99848 * 2 1 3 30 30 H 1.08999 * 109.46894 * 119.99912 * 2 1 3 31 31 H 1.08997 * 109.46938 * 29.99793 * 4 3 2 32 32 H 1.08997 * 109.47536 * 149.99944 * 4 3 2 33 33 H 0.96996 * 120.00164 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47592 * 59.99390 * 15 13 3 35 35 H 1.09007 * 109.47151 * 299.99858 * 15 13 3 36 36 H 0.97003 * 119.99710 * 345.00005 * 16 15 13 37 37 H 1.07999 * 126.59305 * 0.03563 * 21 20 17 38 38 H 1.09001 * 109.47060 * 90.00676 * 23 22 21 39 39 H 1.09004 * 109.47073 * 210.00165 * 23 22 21 40 40 H 1.09000 * 109.47212 * 330.00248 * 23 22 21 41 41 H 1.08005 * 125.65147 * 179.71017 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3897 -2.8779 8 7 3.3492 3.1258 -3.6179 9 14 5.9136 2.0967 -3.4168 10 1 6.1418 0.6400 -3.5935 11 1 6.1611 2.7966 -4.7028 12 1 6.8408 2.6210 -2.3819 13 6 2.2430 2.0166 1.1672 14 8 2.6476 3.1599 1.1673 15 6 1.9923 1.3060 2.4723 16 7 2.3100 2.2033 3.5859 17 16 1.7890 1.8414 5.1155 18 8 0.4094 1.5199 5.0040 19 8 2.2810 2.8719 5.9613 20 6 2.6068 0.3605 5.6083 21 6 3.7900 0.2848 6.2470 22 7 4.0531 -1.0450 6.4370 23 6 5.2343 -1.6125 7.0919 24 6 3.0237 -1.7362 5.9022 25 7 2.1597 -0.8890 5.4136 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5818 1.6878 -2.0283 32 1 2.0956 3.1411 -1.1383 33 1 3.6750 3.5157 -4.4442 34 1 2.6228 0.4186 2.5299 35 1 0.9444 1.0114 2.5303 36 1 2.8256 3.0095 3.4271 37 1 4.4113 1.1139 6.5518 38 1 5.0413 -1.7203 8.1593 39 1 5.4538 -2.5898 6.6620 40 1 6.0866 -0.9498 6.9418 41 1 2.9297 -2.8120 5.8841 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125828540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:03 Heat of formation + Delta-G solvation = -40.982833 kcal Electronic energy + Delta-G solvation = -26421.447691 eV Core-core repulsion = 22465.169284 eV Total energy + Delta-G solvation = -3956.278407 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.51679 -39.21402 -37.14070 -35.78074 -35.50358 -34.58649 -34.40846 -32.76504 -30.25352 -30.08055 -28.14781 -27.69675 -25.95589 -23.01178 -22.71807 -22.45018 -21.81417 -19.47468 -18.73118 -18.31030 -17.48637 -16.49002 -16.46798 -16.23647 -16.05302 -15.73502 -15.42625 -14.91182 -14.67121 -14.51985 -14.31257 -13.77906 -13.58630 -13.35346 -13.34017 -13.28684 -12.71206 -12.16340 -12.12568 -12.03662 -11.96361 -11.82591 -11.65002 -11.52684 -11.19973 -10.92137 -10.73425 -10.53190 -10.48243 -10.28994 -10.15161 -9.68904 -9.58255 -9.32124 -8.98861 -8.44295 -7.70830 -6.05182 -4.10146 0.41431 1.28435 2.20937 2.31543 3.13562 3.29642 3.31330 3.35104 3.38657 3.80541 3.87496 4.00689 4.21983 4.32572 4.43110 4.50402 4.58547 4.78948 4.91117 5.01990 5.26889 5.29575 5.43528 5.51608 5.55182 5.69606 5.74544 5.83952 5.85768 6.13336 6.27625 6.55919 6.57093 7.03936 7.11294 7.38780 7.44079 7.51276 7.90712 8.22038 8.36568 8.85846 9.01454 9.54610 11.02927 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.003317 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.038294 B = 8438.781525 C = 9017.127084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 N -0.592 5.592 4 C 0.246 3.754 5 C -0.528 4.528 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.505 3.495 14 O -0.535 6.535 15 C 0.101 3.899 16 N -1.100 6.100 17 S 2.734 3.266 18 O -0.944 6.944 19 O -0.959 6.959 20 C -0.561 4.561 21 C 0.070 3.930 22 N -0.458 5.458 23 C 0.066 3.934 24 C 0.184 3.816 25 N -0.413 5.413 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.428 0.572 37 H 0.195 0.805 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.755 -13.110 20.681 24.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.022 4.022 3 N -0.324 5.324 4 C 0.127 3.873 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.289 3.711 14 O -0.412 6.412 15 C -0.029 4.029 16 N -0.864 5.864 17 S 2.818 3.182 18 O -0.933 6.933 19 O -0.949 6.949 20 C -0.772 4.772 21 C -0.071 4.071 22 N -0.138 5.138 23 C -0.077 4.077 24 C -0.102 4.102 25 N -0.129 5.129 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.267 0.733 37 H 0.212 0.788 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.646 -12.394 20.675 24.114 hybrid contribution 2.616 -0.505 -0.114 2.667 sum 3.263 -12.900 20.560 24.490 Atomic orbital electron populations 1.22245 0.96425 1.01752 1.02631 1.21499 0.93877 0.83893 1.02887 1.48234 1.63288 1.13399 1.07524 1.19305 0.96296 0.93732 0.77943 1.21390 0.96905 1.32069 1.06309 0.92530 1.24930 0.97812 0.94924 0.96396 1.69918 1.35726 1.33292 1.14326 0.86560 0.84815 0.78183 0.77826 1.20304 1.21169 1.20262 1.20079 0.78931 0.87063 0.84992 1.90655 1.46056 1.17862 1.86668 1.21168 1.02902 0.92477 0.86368 1.55213 1.73179 1.35176 1.22871 1.00887 0.73540 0.71990 0.71799 1.93574 1.29663 1.84532 1.85556 1.93601 1.82022 1.53958 1.65296 1.33543 1.08719 1.15316 1.19605 1.22770 0.97534 0.86865 0.99958 1.45800 1.18765 1.06643 1.42633 1.22233 0.85859 1.00971 0.98592 1.25423 0.85103 1.00005 0.99667 1.70358 1.26403 0.97643 1.18475 0.91960 0.91932 0.92623 0.89703 0.91562 0.94768 0.93742 0.92629 0.89473 0.87628 0.73339 0.78839 0.89815 0.88703 0.88951 0.76797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 10.24 37.16 0.38 -1.99 16 2 C 0.10 1.62 5.93 -4.04 -0.02 1.60 16 3 N -0.59 -12.30 2.46 -175.06 -0.43 -12.73 16 4 C 0.25 6.34 5.16 -5.19 -0.03 6.31 16 5 C -0.53 -14.72 9.39 -34.44 -0.32 -15.05 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 C 0.50 10.34 7.74 -10.98 -0.09 10.25 16 14 O -0.54 -13.01 15.31 5.56 0.09 -12.92 16 15 C 0.10 1.57 5.25 -5.19 -0.03 1.54 16 16 N -1.10 -16.22 5.93 -11.65 -0.07 -16.29 16 17 S 2.73 38.66 5.89 -107.50 -0.63 38.03 16 18 O -0.94 -16.12 17.49 -57.17 -1.00 -17.12 16 19 O -0.96 -14.67 17.84 -57.17 -1.02 -15.69 16 20 C -0.56 -6.95 7.10 -17.81 -0.13 -7.08 16 21 C 0.07 0.66 11.31 -16.56 -0.19 0.48 16 22 N -0.46 -3.31 3.15 -125.99 -0.40 -3.71 16 23 C 0.07 0.16 11.18 59.85 0.67 0.83 16 24 C 0.18 1.57 12.56 -90.38 -1.14 0.43 16 25 N -0.41 -5.17 11.25 -13.86 -0.16 -5.33 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.76 7.22 -51.93 -0.38 0.38 16 29 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 31 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 32 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.09 1.17 7.40 -51.93 -0.38 0.78 16 35 H 0.11 1.52 6.80 -51.93 -0.35 1.17 16 36 H 0.43 6.45 7.70 -34.47 -0.27 6.18 16 37 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 39 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 40 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.22 0.91 8.06 -52.48 -0.42 0.48 16 LS Contribution 366.87 15.07 5.53 5.53 Total: -1.00 -39.48 366.87 -8.80 -48.28 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.44 Total: 2.05 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -0.98 Total: -1.03 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: -0.32 Total: -63.69 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -1.93 Total: -45.73 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 38.66 SS G_CDS: -0.63 Total: 38.03 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -39.48 -8.80 -48.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125828540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.300 kcal (2) G-P(sol) polarization free energy of solvation -39.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds