Wall clock time and date at job start Tue Mar 31 2020 05:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46946 * 2 1 4 4 C 1.50698 * 109.47354 * 240.00353 * 2 1 3 5 5 H 1.08004 * 120.00251 * 245.36085 * 4 2 1 6 6 C 1.37881 * 120.00419 * 65.35405 * 4 2 1 7 7 N 1.31519 * 119.99492 * 5.15720 * 6 4 2 8 8 Si 1.86797 * 120.00069 * 185.15771 * 6 4 2 9 9 H 1.48501 * 109.47243 * 85.00288 * 8 6 4 10 10 H 1.48507 * 109.46766 * 204.99906 * 8 6 4 11 11 H 1.48491 * 109.47366 * 324.99740 * 8 6 4 12 12 N 1.46501 * 109.47411 * 120.00023 * 2 1 3 13 13 C 1.46502 * 119.99616 * 59.99969 * 12 2 1 14 14 C 1.34772 * 120.00239 * 240.00678 * 12 2 1 15 15 O 1.21281 * 119.99930 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00308 * 180.02562 * 14 12 2 17 17 N 1.46498 * 109.47263 * 179.97438 * 16 14 12 18 18 S 1.65603 * 120.00002 * 165.00092 * 17 16 14 19 19 O 1.42100 * 106.40207 * 178.53538 * 18 17 16 20 20 O 1.42102 * 106.40025 * 311.45424 * 18 17 16 21 21 C 1.76200 * 107.21914 * 64.99395 * 18 17 16 22 22 C 1.34665 * 125.98836 * 90.00258 * 21 18 17 23 23 N 1.36885 * 106.81922 * 179.97438 * 22 21 18 24 24 C 1.46503 * 126.39742 * 179.97438 * 23 22 21 25 25 C 1.35046 * 107.20129 * 0.02562 * 23 22 21 26 26 N 1.30493 * 108.70157 * 359.76184 * 25 23 22 27 27 H 1.08998 * 109.47155 * 174.88951 * 1 2 3 28 28 H 1.08999 * 109.47731 * 294.89275 * 1 2 3 29 29 H 1.09004 * 109.47156 * 54.89610 * 1 2 3 30 30 H 0.97003 * 119.99628 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47258 * 90.00586 * 13 12 2 32 32 H 1.09006 * 109.46793 * 210.00283 * 13 12 2 33 33 H 1.08997 * 109.46997 * 330.00243 * 13 12 2 34 34 H 1.09003 * 109.46363 * 299.99558 * 16 14 12 35 35 H 1.09002 * 109.47072 * 59.99037 * 16 14 12 36 36 H 0.96999 * 120.00007 * 344.98900 * 17 16 14 37 37 H 1.07999 * 126.59320 * 359.94000 * 22 21 18 38 38 H 1.08997 * 109.46585 * 90.00450 * 24 23 22 39 39 H 1.08997 * 109.46859 * 210.00035 * 24 23 22 40 40 H 1.08992 * 109.47176 * 330.00463 * 24 23 22 41 41 H 1.07999 * 125.64423 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5800 -1.6362 -1.1338 6 6 1.7927 -0.1784 -2.4798 7 7 1.2157 0.9979 -2.5939 8 14 2.2877 -1.1285 -4.0100 9 1 1.2108 -2.0863 -4.3680 10 1 2.5009 -0.1810 -5.1335 11 1 3.5448 -1.8732 -3.7453 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7931 -0.0356 2.0834 15 8 3.0863 1.1254 1.8913 16 6 3.2960 -0.7462 3.3135 17 7 4.1101 0.1745 4.1107 18 16 4.4854 -0.1986 5.6799 19 8 5.3014 0.8610 6.1602 20 8 3.2681 -0.5856 6.3025 21 6 5.5050 -1.6352 5.6449 22 6 6.8493 -1.6498 5.5672 23 7 7.2318 -2.9642 5.5677 24 6 8.6049 -3.4700 5.4962 25 6 6.1070 -3.7074 5.6452 26 7 5.0785 -2.9059 5.6958 27 1 -0.3633 -1.0236 -0.0915 28 1 -0.3634 0.4325 0.9321 29 1 -0.3634 0.5910 -0.8408 30 1 1.0468 1.3720 -3.4728 31 1 2.4157 -2.7377 0.9716 32 1 1.6238 -2.2852 2.5002 33 1 0.6904 -2.3002 0.9845 34 1 2.4483 -1.0891 3.9068 35 1 3.9017 -1.6023 3.0164 36 1 4.4295 1.0026 3.7194 37 1 7.5005 -0.7899 5.5141 38 1 9.0052 -3.5776 6.5043 39 1 8.6095 -4.4394 4.9980 40 1 9.2214 -2.7692 4.9334 41 1 6.0658 -4.7865 5.6656 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129959803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:44 Heat of formation + Delta-G solvation = -36.881426 kcal Electronic energy + Delta-G solvation = -26364.908736 eV Core-core repulsion = 22408.808179 eV Total energy + Delta-G solvation = -3956.100557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.51695 -39.21708 -37.14681 -35.78583 -35.60297 -34.58316 -34.34392 -32.80870 -30.25515 -29.77428 -27.69917 -26.71071 -26.01167 -25.16327 -22.71768 -21.82707 -21.22298 -19.47270 -18.63452 -18.31336 -17.50515 -16.61025 -16.25296 -16.23289 -16.11363 -15.65998 -15.32802 -14.97344 -14.76327 -14.53725 -14.31878 -13.80455 -13.58478 -13.34964 -13.16774 -12.77432 -12.53658 -12.19992 -12.07323 -12.02577 -11.90429 -11.65371 -11.61416 -11.51087 -11.03609 -10.87765 -10.74760 -10.48733 -10.29087 -10.27015 -10.21532 -9.61078 -9.32371 -9.20505 -9.00612 -8.43687 -7.64706 -6.09132 -4.15284 0.40994 1.28315 2.20982 2.31496 3.12888 3.25542 3.28084 3.32848 3.34984 3.80134 3.88464 4.01092 4.21960 4.32665 4.38867 4.50358 4.58370 4.78910 4.95009 5.02417 5.23378 5.37594 5.48817 5.55305 5.72459 5.80790 5.84127 6.06687 6.30159 6.57022 6.73428 6.76385 7.00185 7.09022 7.35368 7.38891 7.51962 7.68659 7.92280 8.15239 8.47833 8.81223 8.97824 9.50312 10.98254 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.015727 B = 0.003138 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.981502 B = 8920.355470 C = 9814.720782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.256 3.744 3 H 0.070 0.930 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.589 5.589 13 C 0.080 3.920 14 C 0.503 3.497 15 O -0.545 6.545 16 C 0.102 3.898 17 N -1.100 6.100 18 S 2.734 3.266 19 O -0.959 6.959 20 O -0.944 6.944 21 C -0.561 4.561 22 C 0.070 3.930 23 N -0.458 5.458 24 C 0.066 3.934 25 C 0.184 3.816 26 N -0.413 5.413 27 H 0.034 0.966 28 H 0.016 0.984 29 H 0.078 0.922 30 H 0.264 0.736 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.428 0.572 37 H 0.195 0.805 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.359 -11.361 15.890 23.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.156 3.844 3 H 0.088 0.912 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.320 5.320 13 C -0.064 4.064 14 C 0.288 3.712 15 O -0.424 6.424 16 C -0.028 4.028 17 N -0.864 5.864 18 S 2.818 3.182 19 O -0.949 6.949 20 O -0.933 6.933 21 C -0.772 4.772 22 C -0.071 4.071 23 N -0.139 5.139 24 C -0.076 4.076 25 C -0.102 4.102 26 N -0.129 5.129 27 H 0.053 0.947 28 H 0.036 0.964 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.266 0.734 37 H 0.212 0.788 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 12.418 -10.679 16.479 23.234 hybrid contribution 1.777 -0.852 -1.560 2.514 sum 14.196 -11.531 14.919 23.602 Atomic orbital electron populations 1.22033 0.98361 0.99955 0.99722 1.18991 0.90644 0.94971 0.79801 0.91224 1.21272 1.36351 1.08662 0.90391 0.92259 1.24907 0.95110 0.94727 0.98968 1.69943 1.42486 1.15857 1.24053 0.86531 0.78834 0.79651 0.82461 1.20507 1.21192 1.20085 1.48211 1.48606 1.11795 1.23420 1.21656 1.01902 0.82962 0.99835 1.20148 0.79671 0.87259 0.84153 1.90640 1.58449 1.16871 1.76447 1.21125 0.96167 0.92069 0.93401 1.55211 1.66109 1.32182 1.32929 1.00877 0.73375 0.72023 0.71895 1.93600 1.70717 1.52360 1.78209 1.93576 1.43066 1.83482 1.73209 1.33538 1.06034 1.13957 1.23646 1.22765 0.95714 0.87559 1.01100 1.45806 1.09012 1.06640 1.52399 1.22229 0.79295 1.01910 1.04212 1.25423 0.80019 0.99587 1.05136 1.70354 1.29044 0.98418 1.15075 0.94678 0.96446 0.90303 0.92654 0.93039 0.92464 0.90554 0.87568 0.89373 0.73370 0.78844 0.89824 0.88703 0.88951 0.76799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.84 37.15 0.33 -2.99 16 2 C 0.26 6.44 2.51 -69.09 -0.17 6.27 16 3 H 0.07 2.04 6.88 -51.93 -0.36 1.69 16 4 C -0.53 -14.06 8.34 -34.44 -0.29 -14.35 16 5 H 0.06 1.54 7.52 -52.48 -0.39 1.15 16 6 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 7 N -0.89 -25.12 11.99 55.43 0.66 -24.46 16 8 Si 0.90 20.80 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.59 -12.29 2.75 -175.27 -0.48 -12.77 16 13 C 0.08 1.30 9.43 59.85 0.56 1.87 16 14 C 0.50 10.18 7.74 -10.99 -0.09 10.09 16 15 O -0.55 -12.96 15.06 5.56 0.08 -12.87 16 16 C 0.10 1.57 5.26 -5.20 -0.03 1.54 16 17 N -1.10 -15.93 5.93 -11.66 -0.07 -16.00 16 18 S 2.73 38.21 5.89 -107.50 -0.63 37.58 16 19 O -0.96 -14.50 17.84 -57.17 -1.02 -15.52 16 20 O -0.94 -16.05 17.49 -57.17 -1.00 -17.05 16 21 C -0.56 -6.90 7.10 -17.81 -0.13 -7.03 16 22 C 0.07 0.66 11.31 -16.56 -0.19 0.47 16 23 N -0.46 -3.29 3.15 -126.00 -0.40 -3.69 16 24 C 0.07 0.16 11.18 59.85 0.67 0.83 16 25 C 0.18 1.57 12.56 -90.38 -1.14 0.44 16 26 N -0.41 -5.18 11.25 -13.87 -0.16 -5.33 16 27 H 0.03 0.75 6.88 -51.93 -0.36 0.39 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 2.01 6.84 -51.93 -0.36 1.66 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 32 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 33 H 0.08 1.24 6.53 -51.93 -0.34 0.90 16 34 H 0.11 1.50 7.01 -51.93 -0.36 1.14 16 35 H 0.09 1.17 8.11 -51.93 -0.42 0.74 16 36 H 0.43 6.30 7.70 -34.47 -0.27 6.03 16 37 H 0.19 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 39 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 40 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.22 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 360.77 15.07 5.44 5.44 Total: -1.00 -38.20 360.77 -8.43 -46.63 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.28 Total: 3.45 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -0.55 Total: -1.18 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: -0.44 Total: -62.25 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -1.94 Total: -45.44 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 38.21 SS G_CDS: -0.63 Total: 37.58 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.20 -8.43 -46.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129959803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.753 kcal (2) G-P(sol) polarization free energy of solvation -38.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds