Wall clock time and date at job start Tue Mar 31 2020 05:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46946 * 2 1 4 4 C 1.50698 * 109.47354 * 240.00353 * 2 1 3 5 5 H 1.08004 * 120.00251 * 245.36085 * 4 2 1 6 6 C 1.37881 * 120.00419 * 65.35405 * 4 2 1 7 7 N 1.31519 * 119.99492 * 5.15720 * 6 4 2 8 8 Si 1.86797 * 120.00069 * 185.15771 * 6 4 2 9 9 H 1.48501 * 109.47243 * 85.00288 * 8 6 4 10 10 H 1.48507 * 109.46766 * 204.99906 * 8 6 4 11 11 H 1.48491 * 109.47366 * 324.99740 * 8 6 4 12 12 N 1.46501 * 109.47411 * 120.00023 * 2 1 3 13 13 C 1.46502 * 119.99616 * 59.99969 * 12 2 1 14 14 C 1.34772 * 120.00239 * 240.00678 * 12 2 1 15 15 O 1.21281 * 119.99930 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00308 * 180.02562 * 14 12 2 17 17 N 1.46498 * 109.47263 * 179.97438 * 16 14 12 18 18 S 1.65603 * 120.00002 * 165.00092 * 17 16 14 19 19 O 1.42100 * 106.40207 * 178.53538 * 18 17 16 20 20 O 1.42102 * 106.40025 * 311.45424 * 18 17 16 21 21 C 1.76200 * 107.21914 * 64.99395 * 18 17 16 22 22 C 1.34665 * 125.98836 * 90.00258 * 21 18 17 23 23 N 1.36885 * 106.81922 * 179.97438 * 22 21 18 24 24 C 1.46503 * 126.39742 * 179.97438 * 23 22 21 25 25 C 1.35046 * 107.20129 * 0.02562 * 23 22 21 26 26 N 1.30493 * 108.70157 * 359.76184 * 25 23 22 27 27 H 1.08998 * 109.47155 * 174.88951 * 1 2 3 28 28 H 1.08999 * 109.47731 * 294.89275 * 1 2 3 29 29 H 1.09004 * 109.47156 * 54.89610 * 1 2 3 30 30 H 0.97003 * 119.99628 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47258 * 90.00586 * 13 12 2 32 32 H 1.09006 * 109.46793 * 210.00283 * 13 12 2 33 33 H 1.08997 * 109.46997 * 330.00243 * 13 12 2 34 34 H 1.09003 * 109.46363 * 299.99558 * 16 14 12 35 35 H 1.09002 * 109.47072 * 59.99037 * 16 14 12 36 36 H 0.96999 * 120.00007 * 344.98900 * 17 16 14 37 37 H 1.07999 * 126.59320 * 359.94000 * 22 21 18 38 38 H 1.08997 * 109.46585 * 90.00450 * 24 23 22 39 39 H 1.08997 * 109.46859 * 210.00035 * 24 23 22 40 40 H 1.08992 * 109.47176 * 330.00463 * 24 23 22 41 41 H 1.07999 * 125.64423 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5800 -1.6362 -1.1338 6 6 1.7927 -0.1784 -2.4798 7 7 1.2157 0.9979 -2.5939 8 14 2.2877 -1.1285 -4.0100 9 1 1.2108 -2.0863 -4.3680 10 1 2.5009 -0.1810 -5.1335 11 1 3.5448 -1.8732 -3.7453 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7931 -0.0356 2.0834 15 8 3.0863 1.1254 1.8913 16 6 3.2960 -0.7462 3.3135 17 7 4.1101 0.1745 4.1107 18 16 4.4854 -0.1986 5.6799 19 8 5.3014 0.8610 6.1602 20 8 3.2681 -0.5856 6.3025 21 6 5.5050 -1.6352 5.6449 22 6 6.8493 -1.6498 5.5672 23 7 7.2318 -2.9642 5.5677 24 6 8.6049 -3.4700 5.4962 25 6 6.1070 -3.7074 5.6452 26 7 5.0785 -2.9059 5.6958 27 1 -0.3633 -1.0236 -0.0915 28 1 -0.3634 0.4325 0.9321 29 1 -0.3634 0.5910 -0.8408 30 1 1.0468 1.3720 -3.4728 31 1 2.4157 -2.7377 0.9716 32 1 1.6238 -2.2852 2.5002 33 1 0.6904 -2.3002 0.9845 34 1 2.4483 -1.0891 3.9068 35 1 3.9017 -1.6023 3.0164 36 1 4.4295 1.0026 3.7194 37 1 7.5005 -0.7899 5.5141 38 1 9.0052 -3.5776 6.5043 39 1 8.6095 -4.4394 4.9980 40 1 9.2214 -2.7692 4.9334 41 1 6.0658 -4.7865 5.6656 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129959803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:43 Heat of formation + Delta-G solvation = -67.028419 kcal Electronic energy + Delta-G solvation = -26366.216008 eV Core-core repulsion = 22408.808179 eV Total energy + Delta-G solvation = -3957.407829 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.15952 -40.83374 -38.31878 -37.30321 -36.96797 -35.69604 -35.10171 -34.72741 -31.63594 -30.95179 -28.09993 -28.03650 -27.50213 -27.18754 -23.49009 -23.02366 -22.40068 -20.55671 -20.14510 -19.16683 -18.71522 -18.39465 -17.71422 -17.32063 -16.96344 -16.76544 -16.65444 -16.46577 -16.14357 -15.44153 -15.11679 -15.05174 -14.64962 -14.48913 -14.11671 -13.93609 -13.68987 -13.54422 -13.49984 -13.30713 -13.23609 -13.14361 -12.95476 -12.86886 -12.74298 -12.64794 -12.55707 -12.23266 -12.09068 -11.23813 -11.17449 -10.86035 -10.82468 -10.61252 -10.48761 -10.05189 -9.35371 -8.14142 -6.28579 -0.65836 0.58183 1.43372 1.44382 1.53643 1.56704 1.71111 1.76005 2.07872 2.35232 2.50685 2.75654 3.15647 3.17656 3.56079 3.82578 3.93367 3.98323 4.14427 4.23881 4.31820 4.43487 4.49237 4.58879 4.73540 4.73836 4.83198 4.89030 5.01187 5.03107 5.09055 5.18534 5.48948 5.57236 5.68848 5.89542 5.99206 6.06692 6.14968 6.71726 6.78244 6.80377 7.28227 7.45390 8.92625 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.015727 B = 0.003138 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.981502 B = 8920.355470 C = 9814.720782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.259 3.741 3 H 0.016 0.984 4 C -0.537 4.537 5 H 0.065 0.935 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.965 3.035 9 H -0.267 1.267 10 H -0.289 1.289 11 H -0.269 1.269 12 N -0.596 5.596 13 C 0.074 3.926 14 C 0.494 3.506 15 O -0.591 6.591 16 C 0.115 3.885 17 N -1.104 6.104 18 S 2.754 3.246 19 O -0.977 6.977 20 O -0.980 6.980 21 C -0.589 4.589 22 C 0.076 3.924 23 N -0.452 5.452 24 C 0.057 3.943 25 C 0.192 3.808 26 N -0.460 5.460 27 H 0.053 0.947 28 H 0.026 0.974 29 H 0.051 0.949 30 H 0.264 0.736 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.425 0.575 37 H 0.217 0.783 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.235 -14.661 16.303 26.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.157 3.843 3 H 0.034 0.966 4 C -0.576 4.576 5 H 0.083 0.917 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.790 3.210 9 H -0.192 1.192 10 H -0.215 1.215 11 H -0.193 1.193 12 N -0.327 5.327 13 C -0.068 4.068 14 C 0.281 3.719 15 O -0.473 6.473 16 C -0.015 4.015 17 N -0.867 5.867 18 S 2.842 3.158 19 O -0.967 6.967 20 O -0.970 6.970 21 C -0.802 4.802 22 C -0.068 4.068 23 N -0.130 5.130 24 C -0.083 4.083 25 C -0.094 4.094 26 N -0.177 5.177 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.263 0.737 37 H 0.233 0.767 38 H 0.117 0.883 39 H 0.135 0.865 40 H 0.122 0.878 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 14.282 -13.997 16.916 26.193 hybrid contribution 1.311 0.110 -1.626 2.091 sum 15.592 -13.887 15.290 25.880 Atomic orbital electron populations 1.21834 0.97220 1.00628 0.99044 1.18595 0.91482 0.92690 0.81557 0.96624 1.21569 1.36184 1.08743 0.91103 0.91697 1.25773 0.95138 0.95488 1.02191 1.70095 1.43744 1.17469 1.24648 0.85465 0.78903 0.78278 0.78327 1.19242 1.21474 1.19313 1.48202 1.48625 1.13579 1.22263 1.21947 1.02159 0.80149 1.02535 1.20976 0.78863 0.86916 0.85157 1.90614 1.59952 1.19067 1.77660 1.21104 0.97169 0.92076 0.91106 1.55203 1.66370 1.32270 1.32855 0.99900 0.72712 0.72083 0.71092 1.93566 1.70845 1.53812 1.78444 1.93521 1.45325 1.84166 1.73993 1.32863 1.06852 1.13326 1.27129 1.23154 0.95023 0.89316 0.99315 1.46098 1.10607 1.05644 1.50679 1.22625 0.76780 1.03151 1.05754 1.26165 0.79550 1.00894 1.02823 1.70268 1.31306 0.98738 1.17359 0.92768 0.95483 0.92974 0.92749 0.91865 0.88743 0.90550 0.86060 0.86616 0.73677 0.76669 0.88299 0.86470 0.87818 0.73045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.10 8.84 71.98 0.64 -5.46 16 2 C 0.26 13.33 2.51 44.24 0.11 13.44 16 3 H 0.02 0.98 6.88 -2.39 -0.02 0.96 16 4 C -0.54 -28.74 8.34 25.60 0.21 -28.53 16 5 H 0.06 3.32 7.52 -2.91 -0.02 3.29 16 6 C 0.01 0.75 5.29 84.65 0.45 1.19 16 7 N -0.92 -53.63 11.99 21.45 0.26 -53.37 16 8 Si 0.97 42.48 29.54 68.60 2.03 44.51 16 9 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 10 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 12 N -0.60 -24.74 2.75 -826.82 -2.28 -27.02 16 13 C 0.07 2.24 9.43 127.77 1.20 3.45 16 14 C 0.49 20.14 7.74 87.66 0.68 20.82 16 15 O -0.59 -29.28 15.06 -3.03 -0.05 -29.32 16 16 C 0.12 3.40 5.26 85.63 0.45 3.85 16 17 N -1.10 -31.98 5.93 -190.79 -1.13 -33.11 16 18 S 2.75 76.81 5.89 -56.49 -0.33 76.47 16 19 O -0.98 -29.71 17.84 -128.00 -2.28 -32.00 16 20 O -0.98 -33.63 17.49 -128.00 -2.24 -35.87 16 21 C -0.59 -13.68 7.10 83.52 0.59 -13.08 16 22 C 0.08 1.25 11.31 83.08 0.94 2.19 16 23 N -0.45 -4.94 3.15 -552.55 -1.74 -6.68 16 24 C 0.06 0.04 11.18 127.77 1.43 1.47 16 25 C 0.19 2.66 12.56 180.26 2.26 4.92 16 26 N -0.46 -10.63 11.25 -197.78 -2.23 -12.86 16 27 H 0.05 2.30 6.88 -2.39 -0.02 2.29 16 28 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 2.73 6.84 -2.38 -0.02 2.72 16 30 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.06 1.77 8.09 -2.39 -0.02 1.75 16 32 H 0.09 2.14 6.44 -2.38 -0.02 2.13 16 33 H 0.08 2.31 6.53 -2.39 -0.02 2.29 16 34 H 0.12 3.24 7.01 -2.39 -0.02 3.22 16 35 H 0.12 2.80 8.11 -2.39 -0.02 2.78 16 36 H 0.43 12.91 7.70 -96.74 -0.75 12.16 16 37 H 0.22 2.31 8.06 -2.91 -0.02 2.28 16 38 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 39 H 0.12 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.25 1.06 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -86.36 360.77 -0.70 -87.06 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.32 Total: 17.92 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 8.97 Total: 4.26 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -7.12 Total: -133.04 kcal Atomic # 8 Polarization: -92.62 SS G_CDS: -4.57 Total: -97.19 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 76.81 SS G_CDS: -0.33 Total: 76.47 kcal Total: -86.36 -0.70 -87.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129959803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.035 kcal (2) G-P(sol) polarization free energy of solvation -86.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds