Wall clock time and date at job start Tue Mar 31 2020 05:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99665 * 2 1 4 4 H 1.48500 * 109.46971 * 239.72859 * 3 2 1 5 5 H 1.48502 * 109.47209 * 359.72730 * 3 2 1 6 6 H 1.48502 * 109.47106 * 119.72772 * 3 2 1 7 7 C 1.38720 * 120.00450 * 179.72879 * 2 1 3 8 8 H 1.08001 * 119.99939 * 180.26898 * 7 2 1 9 9 O 1.34777 * 119.99613 * 0.27601 * 7 2 1 10 10 C 1.35570 * 117.00110 * 174.94281 * 9 7 2 11 11 C 1.39177 * 119.90313 * 185.27161 * 10 9 7 12 12 C 1.37599 * 120.10204 * 179.76020 * 11 10 9 13 13 C 1.40019 * 119.89452 * 0.51503 * 12 11 10 14 14 C 1.46966 * 120.09732 * 179.76085 * 13 12 11 15 15 C 1.35022 * 120.00349 * 359.97438 * 14 13 12 16 16 C 1.46253 * 120.00306 * 180.02562 * 15 14 13 17 17 O 1.21721 * 119.99799 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.46496 * 119.99485 * 179.97438 * 18 16 15 20 20 H 1.09000 * 109.60685 * 35.32839 * 19 18 16 21 21 C 1.53347 * 109.60014 * 155.81491 * 19 18 16 22 22 C 1.53059 * 108.43828 * 187.27472 * 21 19 18 23 23 C 1.50177 * 109.88980 * 311.11089 * 22 21 19 24 24 O 1.21281 * 118.24207 * 197.55980 * 23 22 21 25 25 N 1.33345 * 123.51038 * 17.58832 * 23 22 21 26 26 C 1.45754 * 124.10809 * 357.74873 * 25 23 22 27 27 C 1.40020 * 119.80467 * 359.74473 * 13 12 11 28 28 C 1.37604 * 119.89470 * 359.97438 * 27 13 12 29 29 H 0.97003 * 119.99391 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.94377 * 0.02636 * 11 10 9 31 31 H 1.07999 * 120.05099 * 180.26005 * 12 11 10 32 32 H 1.07999 * 119.99710 * 179.97438 * 14 13 12 33 33 H 1.07999 * 119.99414 * 359.97438 * 15 14 13 34 34 H 0.96999 * 120.00223 * 0.02562 * 18 16 15 35 35 H 1.09007 * 109.67434 * 307.02353 * 21 19 18 36 36 H 1.09009 * 109.67428 * 67.55358 * 21 19 18 37 37 H 1.09002 * 109.40212 * 190.98710 * 22 21 19 38 38 H 1.09000 * 109.40139 * 71.24354 * 22 21 19 39 39 H 0.97007 * 117.94600 * 177.77310 * 25 23 22 40 40 H 1.08996 * 109.30074 * 258.78936 * 26 25 23 41 41 H 1.09001 * 109.30103 * 139.40922 * 26 25 23 42 42 H 1.07998 * 120.05439 * 180.02562 * 27 13 12 43 43 H 1.08000 * 119.94774 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1077 1.6937 -1.2092 5 1 1.2840 2.7465 -0.0067 6 1 3.0978 1.6994 1.2158 7 6 2.0088 -1.2013 0.0057 8 1 3.0888 -1.2012 0.0101 9 8 1.3349 -2.3685 0.0056 10 6 2.0697 -3.5034 -0.0952 11 6 1.4318 -4.7348 -0.2118 12 6 2.1735 -5.8888 -0.3193 13 6 3.5720 -5.8238 -0.3004 14 6 4.3686 -7.0540 -0.4096 15 6 3.7519 -8.2494 -0.5279 16 6 4.5446 -9.4737 -0.6360 17 8 5.7603 -9.4150 -0.6198 18 7 3.9290 -10.6669 -0.7536 19 6 4.7230 -11.8931 -0.8625 20 1 5.6203 -11.8034 -0.2501 21 6 3.8896 -13.0895 -0.3877 22 6 4.7958 -14.3220 -0.3389 23 6 5.5619 -14.4441 -1.6248 24 8 6.0709 -15.5124 -1.8904 25 7 5.7130 -13.4406 -2.4898 26 6 5.1186 -12.1204 -2.3220 27 6 4.2095 -4.5832 -0.1774 28 6 3.4596 -3.4338 -0.0763 29 1 -0.4849 -0.8401 0.0004 30 1 0.3530 -4.7843 -0.2223 31 1 1.6777 -6.8436 -0.4140 32 1 5.4472 -7.0019 -0.3952 33 1 2.6733 -8.3014 -0.5419 34 1 2.9602 -10.7136 -0.7669 35 1 3.4907 -12.8876 0.6065 36 1 3.0694 -13.2648 -1.0840 37 1 4.1864 -15.2141 -0.1945 38 1 5.4952 -14.2245 0.4915 39 1 6.2520 -13.5993 -3.2806 40 1 4.2326 -12.0415 -2.9519 41 1 5.8394 -11.3599 -2.6225 42 1 5.2879 -4.5283 -0.1628 43 1 3.9503 -2.4764 0.0182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263778167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:24 Heat of formation + Delta-G solvation = -71.524378 kcal Electronic energy + Delta-G solvation = -25871.265687 eV Core-core repulsion = 21881.759291 eV Total energy + Delta-G solvation = -3989.506396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.88331 -39.66265 -39.29026 -37.27939 -36.88594 -34.41886 -33.39074 -32.93187 -32.30594 -30.56084 -29.41365 -27.99309 -25.42421 -25.12411 -23.78831 -22.61094 -22.17112 -20.94377 -20.10305 -19.34468 -18.48753 -17.82215 -17.32105 -17.05207 -16.53611 -16.41286 -15.51921 -15.14900 -15.03961 -14.93400 -14.45904 -14.27435 -14.22997 -14.02425 -13.97438 -13.84699 -13.74333 -13.28269 -12.75552 -12.63207 -12.29698 -12.12163 -11.94669 -11.87800 -11.53055 -11.27426 -11.14808 -11.04240 -10.49111 -10.41806 -10.21675 -10.00427 -9.72607 -9.63640 -9.58803 -9.38575 -8.87593 -8.51726 -7.26618 -7.03001 -4.28692 0.91162 2.00119 2.22742 2.39967 2.66503 3.06786 3.12310 3.15818 3.33137 3.39718 3.92432 4.05199 4.11797 4.24786 4.40516 4.41020 4.70640 4.78467 4.80049 4.89484 4.94890 5.06879 5.11734 5.19528 5.24707 5.38824 5.40980 5.45429 5.53569 5.59083 5.88780 5.97360 6.08580 6.30576 6.31306 6.33614 6.47170 6.64313 6.86151 6.88282 7.02499 7.11057 7.31365 7.34168 7.46718 7.77608 8.12485 8.13007 8.62654 9.29521 10.39894 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.045779 B = 0.001596 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.487848 B =17541.487658 C =17872.615843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.014 3.986 3 Si 1.096 2.904 4 H -0.279 1.279 5 H -0.271 1.271 6 H -0.279 1.279 7 C -0.471 4.471 8 H 0.090 0.910 9 O -0.186 6.186 10 C 0.169 3.831 11 C -0.202 4.202 12 C -0.041 4.041 13 C -0.200 4.200 14 C 0.043 3.957 15 C -0.286 4.286 16 C 0.558 3.442 17 O -0.554 6.554 18 N -0.727 5.727 19 C 0.133 3.867 20 H 0.098 0.902 21 C -0.133 4.133 22 C -0.131 4.131 23 C 0.517 3.483 24 O -0.559 6.559 25 N -0.715 5.715 26 C 0.097 3.903 27 C -0.034 4.034 28 C -0.239 4.239 29 H 0.285 0.715 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.404 0.596 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.402 0.598 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 -20.589 -1.653 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.194 4.194 3 Si 0.919 3.081 4 H -0.205 1.205 5 H -0.196 1.196 6 H -0.204 1.204 7 C -0.546 4.546 8 H 0.107 0.893 9 O -0.088 6.088 10 C 0.113 3.887 11 C -0.222 4.222 12 C -0.060 4.060 13 C -0.201 4.201 14 C 0.023 3.977 15 C -0.307 4.307 16 C 0.351 3.649 17 O -0.434 6.434 18 N -0.379 5.379 19 C 0.027 3.973 20 H 0.116 0.884 21 C -0.171 4.171 22 C -0.171 4.171 23 C 0.304 3.696 24 O -0.438 6.438 25 N -0.367 5.367 26 C -0.029 4.029 27 C -0.052 4.052 28 C -0.258 4.258 29 H 0.095 0.905 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.239 0.761 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.238 0.762 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.133 0.867 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.988 -19.279 -1.541 20.246 hybrid contribution -0.053 -1.646 -0.365 1.687 sum 5.935 -20.925 -1.906 21.834 Atomic orbital electron populations 1.70571 1.06686 1.31975 1.40361 1.26709 0.96744 1.01377 0.94544 0.83102 0.74601 0.73015 0.77385 1.20451 1.19556 1.20445 1.22388 0.93495 0.81934 1.56765 0.89255 1.83589 1.36170 1.12598 1.76399 1.19468 0.90343 0.87218 0.91673 1.20131 0.99669 0.90192 1.12174 1.20867 0.92654 0.96847 0.95604 1.18463 0.92963 0.92334 1.16315 1.22303 0.99250 0.90988 0.85172 1.22383 0.99761 0.91700 1.16866 1.18471 0.87706 0.83781 0.74955 1.90796 1.14227 1.87211 1.51203 1.45769 1.10137 1.05430 1.76573 1.21044 0.96277 0.84409 0.95564 0.88385 1.21976 0.98395 0.93090 1.03627 1.21588 0.99588 1.00177 0.95771 1.20218 0.80383 0.83257 0.85699 1.90777 1.49707 1.26822 1.76500 1.45394 1.53404 1.12159 1.25753 1.21843 0.99452 0.84020 0.97609 1.21012 0.98686 0.91341 0.94179 1.21118 0.93554 0.99253 1.11851 0.90519 0.86271 0.86308 0.85850 0.85783 0.76118 0.89359 0.90322 0.87453 0.87722 0.76245 0.91154 0.89644 0.86666 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.27 13.70 55.48 0.76 -23.51 16 2 C 0.01 0.35 5.49 -17.51 -0.10 0.26 16 3 Si 1.10 22.02 29.92 -169.99 -5.09 16.93 16 4 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.47 -12.33 9.48 30.91 0.29 -12.03 16 8 H 0.09 2.18 5.18 -52.49 -0.27 1.91 16 9 O -0.19 -4.85 9.15 0.75 0.01 -4.85 16 10 C 0.17 3.75 6.66 -38.88 -0.26 3.49 16 11 C -0.20 -3.83 9.97 -39.47 -0.39 -4.22 16 12 C -0.04 -0.66 9.40 -39.15 -0.37 -1.02 16 13 C -0.20 -3.17 5.87 -105.03 -0.62 -3.78 16 14 C 0.04 0.58 9.45 -37.19 -0.35 0.23 16 15 C -0.29 -3.32 9.41 -37.51 -0.35 -3.68 16 16 C 0.56 6.40 7.70 -13.04 -0.10 6.30 16 17 O -0.55 -8.31 15.90 5.17 0.08 -8.23 16 18 N -0.73 -5.38 5.09 -55.12 -0.28 -5.66 16 19 C 0.13 0.90 2.52 -67.80 -0.17 0.73 16 20 H 0.10 0.86 7.58 -51.93 -0.39 0.47 16 21 C -0.13 -0.59 5.51 -26.52 -0.15 -0.73 16 22 C -0.13 -0.74 6.03 -28.11 -0.17 -0.91 16 23 C 0.52 4.65 7.71 -11.87 -0.09 4.55 16 24 O -0.56 -7.40 17.78 5.56 0.10 -7.30 16 25 N -0.71 -5.24 5.45 -61.39 -0.33 -5.58 16 26 C 0.10 0.64 6.75 -4.49 -0.03 0.61 16 27 C -0.03 -0.57 9.78 -39.15 -0.38 -0.96 16 28 C -0.24 -4.80 9.14 -39.46 -0.36 -5.16 16 29 H 0.28 8.12 7.97 -40.82 -0.33 7.80 16 30 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 31 H 0.12 1.47 6.16 -52.49 -0.32 1.15 16 32 H 0.12 1.68 7.52 -52.49 -0.39 1.29 16 33 H 0.12 1.20 6.06 -52.49 -0.32 0.88 16 34 H 0.40 1.94 8.58 -40.82 -0.35 1.59 16 35 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.28 8.13 -51.92 -0.42 -0.14 16 37 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.40 2.70 8.80 -40.82 -0.36 2.34 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.13 2.67 5.62 -52.49 -0.29 2.38 16 LS Contribution 367.62 15.07 5.54 5.54 Total: -1.00 -32.84 367.62 -8.02 -40.86 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.21 Total: 8.11 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -3.60 Total: -16.33 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.15 Total: -34.74 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.19 Total: -20.37 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.09 Total: 16.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.84 -8.02 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263778167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.662 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds