Wall clock time and date at job start Tue Mar 31 2020 05:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99665 * 2 1 4 4 H 1.48500 * 109.46971 * 239.72859 * 3 2 1 5 5 H 1.48502 * 109.47209 * 359.72730 * 3 2 1 6 6 H 1.48502 * 109.47106 * 119.72772 * 3 2 1 7 7 C 1.38720 * 120.00450 * 179.72879 * 2 1 3 8 8 H 1.08001 * 119.99939 * 180.26898 * 7 2 1 9 9 O 1.34777 * 119.99613 * 0.27601 * 7 2 1 10 10 C 1.35570 * 117.00110 * 174.94281 * 9 7 2 11 11 C 1.39177 * 119.90313 * 185.27161 * 10 9 7 12 12 C 1.37599 * 120.10204 * 179.76020 * 11 10 9 13 13 C 1.40019 * 119.89452 * 0.51503 * 12 11 10 14 14 C 1.46966 * 120.09732 * 179.76085 * 13 12 11 15 15 C 1.35022 * 120.00349 * 359.97438 * 14 13 12 16 16 C 1.46253 * 120.00306 * 180.02562 * 15 14 13 17 17 O 1.21721 * 119.99799 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.46496 * 119.99485 * 179.97438 * 18 16 15 20 20 H 1.09000 * 109.60685 * 35.32839 * 19 18 16 21 21 C 1.53347 * 109.60014 * 155.81491 * 19 18 16 22 22 C 1.53059 * 108.43828 * 187.27472 * 21 19 18 23 23 C 1.50177 * 109.88980 * 311.11089 * 22 21 19 24 24 O 1.21281 * 118.24207 * 197.55980 * 23 22 21 25 25 N 1.33345 * 123.51038 * 17.58832 * 23 22 21 26 26 C 1.45754 * 124.10809 * 357.74873 * 25 23 22 27 27 C 1.40020 * 119.80467 * 359.74473 * 13 12 11 28 28 C 1.37604 * 119.89470 * 359.97438 * 27 13 12 29 29 H 0.97003 * 119.99391 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.94377 * 0.02636 * 11 10 9 31 31 H 1.07999 * 120.05099 * 180.26005 * 12 11 10 32 32 H 1.07999 * 119.99710 * 179.97438 * 14 13 12 33 33 H 1.07999 * 119.99414 * 359.97438 * 15 14 13 34 34 H 0.96999 * 120.00223 * 0.02562 * 18 16 15 35 35 H 1.09007 * 109.67434 * 307.02353 * 21 19 18 36 36 H 1.09009 * 109.67428 * 67.55358 * 21 19 18 37 37 H 1.09002 * 109.40212 * 190.98710 * 22 21 19 38 38 H 1.09000 * 109.40139 * 71.24354 * 22 21 19 39 39 H 0.97007 * 117.94600 * 177.77310 * 25 23 22 40 40 H 1.08996 * 109.30074 * 258.78936 * 26 25 23 41 41 H 1.09001 * 109.30103 * 139.40922 * 26 25 23 42 42 H 1.07998 * 120.05439 * 180.02562 * 27 13 12 43 43 H 1.08000 * 119.94774 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1077 1.6937 -1.2092 5 1 1.2840 2.7465 -0.0067 6 1 3.0978 1.6994 1.2158 7 6 2.0088 -1.2013 0.0057 8 1 3.0888 -1.2012 0.0101 9 8 1.3349 -2.3685 0.0056 10 6 2.0697 -3.5034 -0.0952 11 6 1.4318 -4.7348 -0.2118 12 6 2.1735 -5.8888 -0.3193 13 6 3.5720 -5.8238 -0.3004 14 6 4.3686 -7.0540 -0.4096 15 6 3.7519 -8.2494 -0.5279 16 6 4.5446 -9.4737 -0.6360 17 8 5.7603 -9.4150 -0.6198 18 7 3.9290 -10.6669 -0.7536 19 6 4.7230 -11.8931 -0.8625 20 1 5.6203 -11.8034 -0.2501 21 6 3.8896 -13.0895 -0.3877 22 6 4.7958 -14.3220 -0.3389 23 6 5.5619 -14.4441 -1.6248 24 8 6.0709 -15.5124 -1.8904 25 7 5.7130 -13.4406 -2.4898 26 6 5.1186 -12.1204 -2.3220 27 6 4.2095 -4.5832 -0.1774 28 6 3.4596 -3.4338 -0.0763 29 1 -0.4849 -0.8401 0.0004 30 1 0.3530 -4.7843 -0.2223 31 1 1.6777 -6.8436 -0.4140 32 1 5.4472 -7.0019 -0.3952 33 1 2.6733 -8.3014 -0.5419 34 1 2.9602 -10.7136 -0.7669 35 1 3.4907 -12.8876 0.6065 36 1 3.0694 -13.2648 -1.0840 37 1 4.1864 -15.2141 -0.1945 38 1 5.4952 -14.2245 0.4915 39 1 6.2520 -13.5993 -3.2806 40 1 4.2326 -12.0415 -2.9519 41 1 5.8394 -11.3599 -2.6225 42 1 5.2879 -4.5283 -0.1628 43 1 3.9503 -2.4764 0.0182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263778167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:23 Heat of formation + Delta-G solvation = -95.642148 kcal Electronic energy + Delta-G solvation = -25872.311512 eV Core-core repulsion = 21881.759291 eV Total energy + Delta-G solvation = -3990.552221 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56947 -40.96689 -40.45885 -38.66112 -37.79020 -35.16829 -34.81924 -33.97017 -33.46143 -32.01813 -30.34676 -29.11091 -27.12810 -25.77690 -24.78934 -23.76356 -23.33591 -22.09315 -20.99476 -20.47147 -19.78975 -18.78595 -18.45453 -18.24492 -17.26396 -17.17628 -16.83265 -16.26600 -16.10439 -15.82438 -15.74557 -15.69146 -15.38214 -15.07047 -14.96747 -14.91700 -14.62588 -14.40511 -14.15987 -13.45214 -13.35965 -13.16566 -12.91019 -12.68831 -12.65973 -12.55937 -12.46325 -12.07752 -11.94615 -11.93923 -11.29773 -11.09433 -11.00775 -10.92838 -10.57934 -10.29005 -10.08248 -9.94774 -8.98350 -8.73668 -6.27093 -0.27610 0.52509 1.10693 1.49962 1.55240 1.61866 1.79002 1.98785 2.32706 2.34461 2.43268 2.87948 3.12543 3.26879 3.56110 3.62028 3.65816 3.81633 3.90579 3.97917 4.03333 4.22646 4.30747 4.35391 4.39920 4.43952 4.56390 4.60954 4.72966 4.84055 4.86557 5.00995 5.06551 5.11119 5.17364 5.27988 5.30848 5.41095 5.56178 5.65029 5.70627 5.78907 5.96494 6.22976 6.25671 6.59849 6.80274 7.11531 7.27880 7.54615 8.46355 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.045779 B = 0.001596 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.487848 B =17541.487658 C =17872.615843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.040 4.040 3 Si 1.143 2.857 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.490 4.490 8 H 0.095 0.905 9 O -0.241 6.241 10 C 0.129 3.871 11 C -0.207 4.207 12 C -0.036 4.036 13 C -0.165 4.165 14 C 0.011 3.989 15 C -0.239 4.239 16 C 0.554 3.446 17 O -0.589 6.589 18 N -0.703 5.703 19 C 0.131 3.869 20 H 0.078 0.922 21 C -0.120 4.120 22 C -0.127 4.127 23 C 0.511 3.489 24 O -0.610 6.610 25 N -0.709 5.709 26 C 0.100 3.900 27 C -0.043 4.043 28 C -0.248 4.248 29 H 0.263 0.737 30 H 0.125 0.875 31 H 0.167 0.833 32 H 0.124 0.876 33 H 0.156 0.844 34 H 0.422 0.578 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.403 0.597 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.144 0.856 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.252 -24.131 -1.734 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.237 4.237 3 Si 0.959 3.041 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.566 4.566 8 H 0.112 0.888 9 O -0.147 6.147 10 C 0.078 3.922 11 C -0.226 4.226 12 C -0.054 4.054 13 C -0.166 4.166 14 C -0.009 4.009 15 C -0.259 4.259 16 C 0.345 3.655 17 O -0.472 6.472 18 N -0.355 5.355 19 C 0.025 3.975 20 H 0.096 0.904 21 C -0.158 4.158 22 C -0.167 4.167 23 C 0.300 3.700 24 O -0.492 6.492 25 N -0.360 5.360 26 C -0.026 4.026 27 C -0.061 4.061 28 C -0.267 4.267 29 H 0.071 0.929 30 H 0.143 0.857 31 H 0.184 0.816 32 H 0.142 0.858 33 H 0.174 0.826 34 H 0.261 0.739 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.238 0.762 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.162 0.838 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.731 -22.895 -1.631 23.920 hybrid contribution -0.008 -1.312 -0.418 1.377 sum 6.723 -24.207 -2.050 25.206 Atomic orbital electron populations 1.70701 1.07783 1.30317 1.45666 1.28364 0.96853 1.04851 0.93640 0.82601 0.73823 0.68904 0.78808 1.18478 1.19867 1.18445 1.22650 0.93873 0.82768 1.57267 0.88781 1.83585 1.37048 1.13303 1.80794 1.20107 0.91503 0.87530 0.93062 1.20458 1.00482 0.90057 1.11575 1.21333 0.92561 0.97581 0.93933 1.18824 0.93322 0.92827 1.11584 1.22161 0.99269 0.90618 0.88806 1.22787 1.01295 0.90961 1.10899 1.18517 0.87151 0.84826 0.74983 1.90812 1.15931 1.87799 1.52613 1.45569 1.11156 1.04439 1.74360 1.21092 0.96122 0.84900 0.95348 0.90350 1.21935 0.97928 0.90871 1.05089 1.21621 0.99767 1.01466 0.93852 1.20862 0.79967 0.82592 0.86596 1.90757 1.51985 1.28767 1.77716 1.45425 1.52859 1.12193 1.25514 1.21848 0.99752 0.83041 0.97923 1.21340 1.00131 0.90777 0.93839 1.21217 0.93154 1.00167 1.12190 0.92877 0.85729 0.81598 0.85804 0.82634 0.73930 0.87503 0.88537 0.86192 0.87095 0.76156 0.89199 0.90967 0.83830 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.85 13.70 21.62 0.30 -54.55 16 2 C -0.04 -2.19 5.49 84.86 0.47 -1.72 16 3 Si 1.14 46.11 29.92 68.60 2.05 48.16 16 4 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 6 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 7 C -0.49 -27.39 9.48 67.94 0.64 -26.75 16 8 H 0.09 4.88 5.18 -2.91 -0.02 4.87 16 9 O -0.24 -13.53 9.15 -20.22 -0.18 -13.71 16 10 C 0.13 5.94 6.66 22.72 0.15 6.09 16 11 C -0.21 -7.66 9.97 22.34 0.22 -7.43 16 12 C -0.04 -1.01 9.40 22.55 0.21 -0.80 16 13 C -0.16 -4.62 5.87 -20.13 -0.12 -4.74 16 14 C 0.01 0.26 9.45 23.82 0.23 0.48 16 15 C -0.24 -4.12 9.41 23.61 0.22 -3.90 16 16 C 0.55 9.98 7.70 86.33 0.66 10.64 16 17 O -0.59 -15.69 15.90 -4.42 -0.07 -15.76 16 18 N -0.70 -6.60 5.09 -446.50 -2.27 -8.87 16 19 C 0.13 1.24 2.52 45.08 0.11 1.36 16 20 H 0.08 1.14 7.58 -2.39 -0.02 1.12 16 21 C -0.12 -0.48 5.51 30.73 0.17 -0.31 16 22 C -0.13 -1.03 6.03 29.70 0.18 -0.85 16 23 C 0.51 8.24 7.71 87.72 0.68 8.92 16 24 O -0.61 -15.75 17.78 -3.03 -0.05 -15.80 16 25 N -0.71 -8.96 5.45 -467.33 -2.55 -11.50 16 26 C 0.10 1.00 6.75 86.49 0.58 1.58 16 27 C -0.04 -1.38 9.78 22.55 0.22 -1.16 16 28 C -0.25 -10.16 9.14 22.35 0.20 -9.96 16 29 H 0.26 16.40 7.97 -92.71 -0.74 15.66 16 30 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 31 H 0.17 3.00 6.16 -2.91 -0.02 2.98 16 32 H 0.12 2.92 7.52 -2.91 -0.02 2.90 16 33 H 0.16 1.74 6.06 -2.91 -0.02 1.72 16 34 H 0.42 1.20 8.58 -92.71 -0.80 0.40 16 35 H 0.11 0.14 8.14 -2.38 -0.02 0.12 16 36 H 0.10 0.13 8.13 -2.38 -0.02 0.11 16 37 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.40 4.91 8.80 -92.70 -0.82 4.09 16 40 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 43 H 0.12 5.11 5.62 -2.91 -0.02 5.10 16 Total: -1.00 -79.88 367.62 1.56 -78.32 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -0.50 Total: 22.25 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 4.84 Total: -28.54 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -4.52 Total: -74.92 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -0.31 Total: -45.27 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.05 Total: 48.16 kcal Total: -79.88 1.56 -78.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263778167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.319 kcal (2) G-P(sol) polarization free energy of solvation -79.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds