Wall clock time and date at job start Tue Mar 31 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00649 * 2 1 4 4 H 1.48496 * 109.47354 * 240.00629 * 3 2 1 5 5 H 1.48500 * 109.46713 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47010 * 120.00227 * 3 2 1 7 7 C 1.37885 * 119.99514 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00071 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99951 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46958 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47289 * 180.02562 * 10 9 7 12 12 C 1.34771 * 120.00282 * 179.97438 * 11 10 9 13 13 O 1.21552 * 120.00287 * 0.02562 * 12 11 10 14 14 C 1.47849 * 120.00088 * 179.97438 * 12 11 10 15 15 C 1.39576 * 120.14251 * 180.02562 * 14 12 11 16 16 C 1.37954 * 119.85233 * 180.02562 * 15 14 12 17 17 C 1.38368 * 120.14436 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.85374 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47137 * 90.00423 * 18 17 16 20 20 H 1.08994 * 110.54057 * 56.39171 * 19 18 17 21 21 C 1.54228 * 110.54077 * 179.44982 * 19 18 17 22 22 C 1.51312 * 103.55616 * 118.82772 * 21 19 18 23 23 O 1.21233 * 125.39940 * 179.89908 * 22 21 19 24 24 N 1.33879 * 109.20866 * 359.63118 * 22 21 19 25 25 C 1.33875 * 114.47007 * 0.24539 * 24 22 21 26 26 O 1.21230 * 125.39255 * 179.97438 * 25 24 22 27 27 C 1.38351 * 120.29139 * 0.27698 * 17 16 15 28 28 C 1.37960 * 120.14655 * 359.44742 * 27 17 16 29 29 H 0.97003 * 119.99331 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.46580 * 60.00790 * 9 7 2 31 31 H 1.08996 * 109.46992 * 300.00559 * 9 7 2 32 32 H 1.09003 * 109.46929 * 60.00200 * 10 9 7 33 33 H 1.09001 * 109.47439 * 300.00710 * 10 9 7 34 34 H 0.97003 * 119.99967 * 0.02562 * 11 10 9 35 35 H 1.08004 * 120.07510 * 0.02562 * 15 14 12 36 36 H 1.08002 * 119.93311 * 180.02562 * 16 15 14 37 37 H 1.09006 * 109.47227 * 329.99726 * 18 17 16 38 38 H 1.09004 * 109.47036 * 210.00264 * 18 17 16 39 39 H 1.09004 * 110.71582 * 0.25964 * 21 19 18 40 40 H 1.08995 * 110.50290 * 237.29072 * 21 19 18 41 41 H 0.96996 * 122.76261 * 180.24248 * 24 22 21 42 42 H 1.07996 * 119.93127 * 179.70144 * 27 17 16 43 43 H 1.08004 * 120.07830 * 180.25385 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5124 -4.9309 -0.0012 12 6 2.1862 -6.0981 -0.0018 13 8 3.4017 -6.0982 -0.0014 14 6 1.4469 -7.3784 -0.0018 15 6 2.1416 -8.5890 -0.0019 16 6 1.4457 -9.7801 -0.0025 17 6 0.0621 -9.7765 -0.0025 18 6 -0.6915 -11.0816 -0.0025 19 6 -0.9466 -11.5233 1.4399 20 1 -1.4801 -10.7474 1.9888 21 6 -1.7296 -12.8517 1.4687 22 6 -0.7909 -13.8014 2.1803 23 8 -1.0199 -14.9677 2.4190 24 7 0.3350 -13.1512 2.4994 25 6 0.3558 -11.8644 2.1306 26 8 1.2728 -11.0944 2.3202 27 6 -0.6326 -8.5801 -0.0076 28 6 0.0511 -7.3819 -0.0013 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6244 -2.5570 0.8896 32 1 2.8716 -3.6045 0.8895 33 1 2.8717 -3.6045 -0.8904 34 1 0.5424 -4.9308 -0.0019 35 1 3.2217 -8.5932 -0.0016 36 1 1.9820 -10.7176 -0.0022 37 1 -0.1025 -11.8413 -0.5165 38 1 -1.6440 -10.9511 -0.5164 39 1 -1.9339 -13.2008 0.4565 40 1 -2.6567 -12.7362 2.0301 41 1 1.0747 -13.5773 2.9600 42 1 -1.7126 -8.5841 -0.0124 43 1 -0.4924 -6.4485 -0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273041695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:30 Heat of formation + Delta-G solvation = -119.308694 kcal Electronic energy + Delta-G solvation = -26439.618567 eV Core-core repulsion = 22448.040088 eV Total energy + Delta-G solvation = -3991.578479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.79572 -41.19066 -39.85082 -39.27790 -36.98314 -36.66842 -35.26033 -34.83124 -32.53075 -31.92141 -31.20900 -28.58853 -26.85547 -25.88345 -23.78555 -23.64358 -22.74988 -22.65806 -21.62582 -21.02533 -19.00731 -18.87126 -18.49603 -17.77645 -17.12629 -17.04714 -16.57312 -16.50954 -16.37123 -16.02200 -15.72600 -15.54576 -15.24025 -14.99272 -14.93366 -14.65007 -14.33234 -14.28688 -14.20908 -13.87107 -13.23682 -13.21380 -13.05792 -12.91563 -12.55646 -12.38682 -12.26204 -12.12939 -11.90745 -11.70299 -11.53746 -11.47822 -11.35921 -11.01181 -10.95651 -10.60659 -10.15455 -9.85305 -9.62086 -8.24435 -6.34806 -0.13396 0.46798 0.55776 1.41664 1.43940 1.51921 1.76833 1.85006 1.87677 2.19920 2.44337 2.89757 3.10086 3.18471 3.29848 3.43223 3.75115 3.87492 3.97861 4.05951 4.09180 4.34457 4.44336 4.45236 4.47048 4.55417 4.73477 4.80030 4.81518 4.89170 4.94645 5.05248 5.12848 5.14838 5.22883 5.38502 5.43760 5.49559 5.56071 5.60991 5.68583 5.77091 6.00958 6.15044 6.33619 6.56739 6.77184 6.88516 7.18713 7.34084 8.87162 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.030718 B = 0.001844 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.308896 B =15177.336423 C =15544.798986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.550 4.550 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.139 3.861 11 N -0.710 5.710 12 C 0.544 3.456 13 O -0.594 6.594 14 C -0.153 4.153 15 C -0.082 4.082 16 C -0.099 4.099 17 C -0.062 4.062 18 C -0.063 4.063 19 C -0.112 4.112 20 H 0.147 0.853 21 C -0.137 4.137 22 C 0.530 3.470 23 O -0.529 6.529 24 N -0.684 5.684 25 C 0.520 3.480 26 O -0.504 6.504 27 C -0.109 4.109 28 C -0.092 4.092 29 H 0.267 0.733 30 H 0.012 0.988 31 H 0.011 0.989 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.410 0.590 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.090 0.910 38 H 0.139 0.861 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.414 0.586 42 H 0.173 0.827 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.811 -29.911 0.621 31.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.075 0.925 9 C -0.013 4.013 10 C 0.015 3.985 11 N -0.361 5.361 12 C 0.334 3.666 13 O -0.477 6.477 14 C -0.156 4.156 15 C -0.101 4.101 16 C -0.117 4.117 17 C -0.063 4.063 18 C -0.100 4.100 19 C -0.133 4.133 20 H 0.164 0.836 21 C -0.176 4.176 22 C 0.320 3.680 23 O -0.404 6.404 24 N -0.348 5.348 25 C 0.309 3.691 26 O -0.376 6.376 27 C -0.126 4.126 28 C -0.111 4.111 29 H 0.075 0.925 30 H 0.030 0.970 31 H 0.029 0.971 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.248 0.752 35 H 0.127 0.873 36 H 0.145 0.855 37 H 0.108 0.892 38 H 0.157 0.843 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.252 0.748 42 H 0.191 0.809 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.885 -29.868 0.760 31.471 hybrid contribution 1.247 1.011 0.576 1.706 sum -8.638 -28.858 1.335 30.152 Atomic orbital electron populations 1.70041 1.07425 1.28096 1.50733 1.25854 0.95847 1.02997 0.94342 0.85502 0.78329 0.78180 0.79052 1.19405 1.20377 1.19506 1.21425 0.93553 0.91951 1.51906 0.92455 1.19127 0.94141 0.91489 0.96560 1.21286 0.95232 0.82120 0.99834 1.46048 1.11115 1.05424 1.73490 1.18998 0.87040 0.85038 0.75569 1.90696 1.15666 1.88454 1.52842 1.19869 0.95147 0.91850 1.08693 1.21172 1.00011 0.91949 0.96952 1.21003 0.94809 0.96719 0.99189 1.20277 0.92911 0.96570 0.96500 1.20734 1.03242 0.92597 0.93457 1.22190 0.92189 1.00517 0.98371 0.83559 1.22704 0.99046 0.90060 1.05808 1.21468 0.82686 0.87334 0.76493 1.90825 1.77631 1.17563 1.54359 1.44962 1.20844 1.13939 1.55033 1.21452 0.90186 0.80516 0.76946 1.90899 1.40674 1.52755 1.53286 1.21375 1.01890 0.90070 0.99262 1.21567 0.91650 1.00654 0.97195 0.92461 0.96982 0.97111 0.93643 0.93479 0.75230 0.87277 0.85521 0.89161 0.84335 0.82965 0.83101 0.74759 0.80914 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.89 13.29 21.45 0.28 -53.61 16 2 C 0.01 0.49 5.46 84.66 0.46 0.95 16 3 Si 0.96 43.82 29.54 68.60 2.03 45.84 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.55 -31.11 9.11 25.60 0.23 -30.88 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.24 5.09 29.85 0.15 1.39 16 10 C 0.14 6.27 5.61 86.38 0.48 6.76 16 11 N -0.71 -26.63 5.51 -465.98 -2.57 -29.19 16 12 C 0.54 20.91 7.77 86.79 0.67 21.59 16 13 O -0.59 -27.69 16.35 -3.88 -0.06 -27.75 16 14 C -0.15 -4.51 5.87 -20.09 -0.12 -4.63 16 15 C -0.08 -2.29 9.60 22.53 0.22 -2.08 16 16 C -0.10 -1.98 7.43 22.23 0.17 -1.82 16 17 C -0.06 -0.79 4.74 -19.81 -0.09 -0.88 16 18 C -0.06 -0.15 4.69 29.85 0.14 -0.01 16 19 C -0.11 -0.26 3.13 -10.93 -0.03 -0.29 16 20 H 0.15 -0.01 8.14 -2.39 -0.02 -0.03 16 21 C -0.14 0.18 6.67 30.46 0.20 0.39 16 22 C 0.53 4.38 8.55 87.99 0.75 5.13 16 23 O -0.53 -8.93 18.02 -2.88 -0.05 -8.98 16 24 N -0.68 -6.11 5.48 -427.79 -2.34 -8.46 16 25 C 0.52 5.76 7.67 87.99 0.68 6.43 16 26 O -0.50 -10.40 15.04 -2.88 -0.04 -10.45 16 27 C -0.11 -1.40 9.68 22.23 0.22 -1.19 16 28 C -0.09 -1.93 9.54 22.53 0.21 -1.71 16 29 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.41 12.87 6.51 -92.71 -0.60 12.27 16 35 H 0.11 3.45 7.65 -2.91 -0.02 3.42 16 36 H 0.13 2.28 7.67 -2.91 -0.02 2.26 16 37 H 0.09 0.15 8.08 -2.38 -0.02 0.13 16 38 H 0.14 -0.62 8.08 -2.39 -0.02 -0.64 16 39 H 0.15 -0.90 7.74 -2.38 -0.02 -0.91 16 40 H 0.15 -0.84 8.14 -2.39 -0.02 -0.85 16 41 H 0.41 3.57 8.96 -92.71 -0.83 2.74 16 42 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 43 H 0.14 2.54 6.41 -2.91 -0.02 2.52 16 Total: -1.00 -84.48 369.21 1.22 -83.26 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -0.37 Total: 10.19 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 4.34 Total: -0.86 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -4.62 Total: -91.26 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -0.16 Total: -47.17 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -84.48 1.22 -83.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273041695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.048 kcal (2) G-P(sol) polarization free energy of solvation -84.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds