Wall clock time and date at job start Tue Mar 31 2020 05:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99920 * 2 1 4 4 H 1.48500 * 109.47331 * 269.99573 * 3 2 1 5 5 H 1.48497 * 109.47418 * 29.99760 * 3 2 1 6 6 H 1.48498 * 109.46869 * 150.00089 * 3 2 1 7 7 C 1.37880 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00192 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99506 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46850 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46939 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00124 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99761 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99970 * 179.97438 * 13 11 10 15 15 C 1.53034 * 109.46042 * 155.00317 * 14 13 11 16 16 C 1.53196 * 109.31382 * 181.38645 * 15 14 13 17 17 N 1.46923 * 108.77041 * 305.36336 * 16 15 14 18 18 S 1.65612 * 120.62999 * 233.58374 * 17 16 15 19 19 O 1.42103 * 104.27373 * 333.93105 * 18 17 16 20 20 O 1.42093 * 104.27698 * 206.07737 * 18 17 16 21 21 C 1.81399 * 104.44768 * 90.00081 * 18 17 16 22 22 C 1.53001 * 117.51607 * 111.28692 * 21 18 17 23 23 C 1.52999 * 60.00190 * 107.47864 * 22 21 18 24 24 C 1.46922 * 118.74188 * 53.86226 * 17 16 15 25 25 C 1.53040 * 109.45930 * 275.07070 * 14 13 11 26 26 H 0.97001 * 119.99931 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47462 * 60.00483 * 9 7 2 28 28 H 1.08997 * 109.47392 * 300.00056 * 9 7 2 29 29 H 1.08994 * 109.47233 * 59.99863 * 10 9 7 30 30 H 1.09003 * 109.47089 * 299.99656 * 10 9 7 31 31 H 0.97007 * 120.00090 * 0.02562 * 13 11 10 32 32 H 1.09002 * 109.44984 * 35.03365 * 14 13 11 33 33 H 1.09005 * 109.50282 * 61.43062 * 15 14 13 34 34 H 1.09005 * 109.49962 * 301.33711 * 15 14 13 35 35 H 1.09003 * 109.58786 * 185.57729 * 16 15 14 36 36 H 1.08992 * 109.58639 * 65.15007 * 16 15 14 37 37 H 1.09002 * 115.55327 * 325.58476 * 21 18 17 38 38 H 1.09001 * 117.49733 * 214.97294 * 22 21 18 39 39 H 1.08995 * 117.49577 * 359.97438 * 22 21 18 40 40 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 41 41 H 1.09004 * 117.49681 * 107.48417 * 23 22 21 42 42 H 1.08997 * 109.58802 * 65.92482 * 24 17 16 43 43 H 1.09004 * 109.58690 * 186.35025 * 24 17 16 44 44 H 1.09001 * 109.49569 * 298.56573 * 25 14 13 45 45 H 1.09001 * 109.50071 * 58.65704 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5285 -2.6366 0.0001 12 8 6.1349 -1.5863 -0.0004 13 7 6.2024 -3.8038 0.0008 14 6 7.6674 -3.8039 0.0002 15 6 8.1774 -5.1112 0.6108 16 6 9.7090 -5.0930 0.6403 17 7 10.2049 -4.8269 -0.7169 18 16 11.3035 -5.8420 -1.4279 19 8 11.9894 -6.4370 -0.3348 20 8 11.9883 -5.0185 -2.3617 21 6 10.2891 -7.0744 -2.2897 22 6 10.3017 -7.0553 -3.8196 23 6 11.0193 -8.1746 -3.0627 24 6 9.7125 -3.6399 -1.4289 25 6 8.1767 -3.6774 -1.4374 26 1 -0.4850 0.8401 -0.0004 27 1 3.8752 -0.6797 0.8895 28 1 3.8745 -0.6808 -0.8905 29 1 3.6578 -3.1507 -0.8896 30 1 3.6586 -3.1503 0.8904 31 1 5.7174 -4.6439 0.0008 32 1 8.0306 -2.9618 0.5895 33 1 7.8351 -5.9523 0.0078 34 1 7.7952 -5.2118 1.6266 35 1 10.0794 -6.0596 0.9818 36 1 10.0521 -4.3088 1.3150 37 1 9.3539 -7.3411 -1.7974 38 1 9.3747 -7.3093 -4.3337 39 1 10.9192 -6.3018 -4.3084 40 1 12.1092 -8.1577 -3.0534 41 1 10.5644 -9.1651 -3.0787 42 1 10.0559 -2.7396 -0.9196 43 1 10.0852 -3.6474 -2.4532 44 1 7.8344 -4.5319 -2.0211 45 1 7.7939 -2.7576 -1.8794 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331428811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:58 Heat of formation + Delta-G solvation = -118.035842 kcal Electronic energy + Delta-G solvation = -26479.452935 eV Core-core repulsion = 22623.373602 eV Total energy + Delta-G solvation = -3856.079333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.99083 -39.21814 -38.44051 -37.82830 -37.12063 -35.74554 -35.44145 -33.37387 -32.12047 -31.73716 -28.08316 -25.32002 -24.51871 -24.37116 -23.52040 -22.97035 -21.52438 -21.03407 -19.89513 -19.21559 -19.02082 -18.00245 -17.50604 -17.14107 -16.94993 -16.43934 -16.23992 -16.19754 -15.59480 -15.32706 -15.05874 -14.94287 -14.67121 -14.55932 -14.38480 -14.15344 -13.61498 -13.58870 -13.38275 -13.33789 -12.96388 -12.89731 -12.60773 -12.59039 -12.24200 -12.11205 -12.09265 -12.06695 -11.95996 -11.93048 -11.75405 -11.60893 -11.51160 -11.38602 -10.77615 -10.72212 -10.07156 -9.98176 -8.31178 -6.33727 -0.80024 1.33325 1.35660 1.50373 1.51252 1.74748 2.22476 2.27325 2.35220 2.80529 3.04763 3.17544 3.47064 3.59938 3.73698 3.85338 3.88975 3.99632 4.05097 4.10777 4.21226 4.35869 4.40942 4.52733 4.53201 4.57852 4.68619 4.74144 4.77103 4.82169 4.87825 4.96761 5.02219 5.03755 5.10675 5.16341 5.27768 5.36482 5.47091 5.55792 5.59951 5.63535 6.24292 6.67046 6.73208 7.31769 7.39131 8.84449 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.026958 B = 0.002276 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.397332 B =12299.240224 C =12446.449127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.938 3.062 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.051 0.949 9 C 0.005 3.995 10 C -0.117 4.117 11 C 0.515 3.485 12 O -0.585 6.585 13 N -0.714 5.714 14 C 0.141 3.859 15 C -0.132 4.132 16 C 0.119 3.881 17 N -0.996 5.996 18 S 2.639 3.361 19 O -0.985 6.985 20 O -0.986 6.986 21 C -0.678 4.678 22 C -0.127 4.127 23 C -0.132 4.132 24 C 0.127 3.873 25 C -0.139 4.139 26 H 0.267 0.733 27 H 0.008 0.992 28 H 0.008 0.992 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.416 0.584 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.182 0.818 38 H 0.132 0.868 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.136 0.864 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.876 -21.122 -4.873 32.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.185 4.185 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.069 0.931 9 C -0.033 4.033 10 C -0.157 4.157 11 C 0.303 3.697 12 O -0.465 6.465 13 N -0.366 5.366 14 C 0.036 3.964 15 C -0.171 4.171 16 C -0.006 4.006 17 N -0.834 5.834 18 S 2.736 3.264 19 O -0.976 6.976 20 O -0.976 6.976 21 C -0.790 4.790 22 C -0.165 4.165 23 C -0.171 4.171 24 C 0.002 3.998 25 C -0.180 4.180 26 H 0.076 0.924 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.254 0.746 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.199 0.801 38 H 0.150 0.850 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.154 0.846 42 H 0.087 0.913 43 H 0.117 0.883 44 H 0.109 0.891 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 25.118 -20.172 -4.777 32.568 hybrid contribution -1.047 0.659 0.025 1.237 sum 24.071 -19.513 -4.752 31.349 Atomic orbital electron populations 1.70026 1.07771 1.28054 1.52619 1.25810 0.95487 1.02850 0.94365 0.85831 0.79217 0.79557 0.79107 1.19398 1.20501 1.18595 1.21451 0.91346 0.93656 1.50116 0.93109 1.19216 0.93812 0.94040 0.96248 1.21493 0.89620 0.99627 1.04968 1.21140 0.90831 0.83593 0.74099 1.90644 1.71297 1.33371 1.51169 1.45966 1.06984 1.08429 1.75270 1.20938 0.79376 0.99478 0.96559 1.22190 0.95212 0.96409 1.03299 1.21549 0.93559 1.03668 0.81827 1.57576 1.63337 1.37441 1.25030 1.03826 0.74374 0.74601 0.73610 1.93551 1.71694 1.79549 1.52759 1.93547 1.71858 1.66136 1.66078 1.32420 1.18693 1.19518 1.08340 1.23034 1.04858 1.01321 0.87255 1.23044 0.99892 0.95558 0.98567 1.21463 0.93363 0.87277 0.97732 1.22346 0.95189 1.03189 0.97244 0.92422 0.97355 0.97401 0.87976 0.88052 0.74644 0.91831 0.88409 0.88548 0.87334 0.90748 0.80051 0.84982 0.87066 0.87543 0.84568 0.91334 0.88259 0.89135 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.75 13.96 21.45 0.30 -58.45 16 2 C 0.01 0.73 5.47 84.65 0.46 1.20 16 3 Si 0.94 46.54 27.47 68.60 1.88 48.43 16 4 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.26 -12.91 6.54 99.48 0.65 -12.26 16 7 C -0.53 -30.02 9.66 25.60 0.25 -29.77 16 8 H 0.05 3.03 7.99 -2.91 -0.02 3.01 16 9 C 0.00 0.23 3.33 29.85 0.10 0.33 16 10 C -0.12 -4.18 5.64 29.85 0.17 -4.01 16 11 C 0.52 16.78 7.79 87.66 0.68 17.46 16 12 O -0.59 -24.44 15.64 -3.02 -0.05 -24.49 16 13 N -0.71 -14.91 5.08 -442.41 -2.25 -17.15 16 14 C 0.14 2.60 2.41 45.02 0.11 2.71 16 15 C -0.13 -1.38 5.55 30.67 0.17 -1.21 16 16 C 0.12 1.46 6.31 86.36 0.55 2.01 16 17 N -1.00 -14.61 3.21 -512.30 -1.65 -16.26 16 18 S 2.64 42.83 5.78 -56.49 -0.33 42.50 16 19 O -0.99 -21.78 16.72 -127.65 -2.13 -23.92 16 20 O -0.99 -22.12 16.01 -127.65 -2.04 -24.16 16 21 C -0.68 -5.81 6.59 30.60 0.20 -5.61 16 22 C -0.13 -0.93 10.17 30.59 0.31 -0.62 16 23 C -0.13 -0.90 10.30 30.60 0.31 -0.59 16 24 C 0.13 2.10 6.34 86.51 0.55 2.65 16 25 C -0.14 -2.42 5.67 30.82 0.17 -2.24 16 26 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 27 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 28 H 0.01 0.39 7.53 -2.39 -0.02 0.37 16 29 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 30 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 31 H 0.42 5.75 8.60 -92.70 -0.80 4.95 16 32 H 0.06 1.54 7.58 -2.39 -0.02 1.53 16 33 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.11 1.07 7.10 -2.39 -0.02 1.06 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.18 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.11 0.99 7.66 -2.39 -0.02 0.97 16 40 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.14 0.38 8.14 -2.38 -0.02 0.36 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.10 1.51 7.09 -2.38 -0.02 1.50 16 44 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -82.86 376.58 -2.09 -84.95 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 0.13 Total: 6.26 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: 4.04 Total: -17.70 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -3.59 Total: -91.86 kcal Atomic # 8 Polarization: -68.35 SS G_CDS: -4.23 Total: -72.57 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.88 Total: 48.43 kcal Atomic # 16 Polarization: 42.83 SS G_CDS: -0.33 Total: 42.50 kcal Total: -82.86 -2.09 -84.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331428811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.086 kcal (2) G-P(sol) polarization free energy of solvation -82.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds