Wall clock time and date at job start Tue Mar 31 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00041 * 2 1 4 4 S 1.65603 * 119.99819 * 179.97438 * 2 1 3 5 5 O 1.42095 * 106.40682 * 336.45808 * 4 2 1 6 6 O 1.42102 * 106.40152 * 203.53878 * 4 2 1 7 7 N 1.65596 * 107.21862 * 90.00344 * 4 2 1 8 8 C 1.36942 * 119.99869 * 269.99946 * 7 4 2 9 9 H 1.07993 * 119.99896 * 39.40376 * 8 7 4 10 10 C 1.38814 * 119.99585 * 219.40796 * 8 7 4 11 11 N 1.31620 * 120.00378 * 20.05428 * 10 8 7 12 12 Si 1.86802 * 119.99669 * 200.04702 * 10 8 7 13 13 H 1.48506 * 109.46991 * 60.00483 * 12 10 8 14 14 H 1.48500 * 109.47135 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47418 * 300.00273 * 12 10 8 16 16 C 1.46496 * 120.00441 * 89.99789 * 7 4 2 17 17 C 1.50703 * 109.47153 * 262.10971 * 16 7 4 18 18 O 1.21277 * 119.99764 * 359.97438 * 17 16 7 19 19 N 1.34778 * 120.00120 * 179.97438 * 17 16 7 20 20 C 1.46499 * 120.00100 * 179.97438 * 19 17 16 21 21 C 1.47196 * 112.84718 * 48.80438 * 20 19 17 22 22 N 4.90995 * 105.73355 * 316.20637 * 2 1 3 23 23 C 1.53782 * 113.61323 * 179.97438 * 20 19 17 24 24 C 1.53777 * 87.08125 * 89.20145 * 23 20 19 25 25 C 1.53784 * 87.17246 * 25.38805 * 24 23 20 26 26 H 1.09001 * 109.47161 * 269.99944 * 1 2 3 27 27 H 1.08994 * 109.47181 * 30.00665 * 1 2 3 28 28 H 1.09012 * 109.46951 * 149.99923 * 1 2 3 29 29 H 1.09000 * 109.47109 * 239.99994 * 3 2 1 30 30 H 1.09000 * 109.47033 * 359.97438 * 3 2 1 31 31 H 1.08996 * 109.47181 * 119.99927 * 3 2 1 32 32 H 0.96997 * 120.00080 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.47563 * 142.11069 * 16 7 4 34 34 H 1.09001 * 109.47178 * 22.10494 * 16 7 4 35 35 H 0.97004 * 119.99731 * 0.02562 * 19 17 16 36 36 H 1.08998 * 113.61360 * 334.65521 * 23 20 19 37 37 H 1.09002 * 113.69180 * 203.75862 * 23 20 19 38 38 H 1.08995 * 113.61886 * 139.98262 * 24 23 20 39 39 H 1.09002 * 113.61594 * 270.79984 * 24 23 20 40 40 H 1.09000 * 113.61185 * 89.16210 * 25 24 23 41 41 H 1.09000 * 113.61202 * 220.05825 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 0.0006 5 8 1.4114 -2.4063 0.5455 6 8 3.5759 -1.1566 0.5449 7 7 2.5381 -1.8594 -1.5809 8 6 1.6124 -2.6281 -2.2346 9 1 0.5583 -2.4602 -2.0706 10 6 2.0291 -3.6233 -3.1081 11 7 3.2528 -4.1009 -3.0262 12 14 0.8527 -4.2849 -4.3996 13 1 0.4260 -3.1785 -5.2936 14 1 1.5350 -5.3334 -5.1999 15 1 -0.3380 -4.8691 -3.7319 16 6 3.7452 -1.4132 -2.2808 17 6 3.4276 -0.1882 -3.0992 18 8 2.3034 0.2668 -3.0983 19 7 4.3928 0.4015 -3.8322 20 6 4.0838 1.5919 -4.6282 21 6 3.3563 2.6178 -3.8635 22 7 2.7964 3.4114 -3.2707 23 6 5.2908 2.1437 -5.4051 24 6 4.8803 1.2066 -6.5533 25 6 3.4493 1.2728 -5.9940 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8901 -0.5139 29 1 2.8241 1.3264 -0.8900 30 1 1.4892 2.0972 -0.0005 31 1 2.8241 1.3264 0.8900 32 1 3.5438 -4.7965 -3.6363 33 1 4.0989 -2.2075 -2.9381 34 1 4.5196 -1.1726 -1.5524 35 1 5.2918 0.0372 -3.8331 36 1 6.2515 1.8901 -4.9570 37 1 5.2054 3.2016 -5.6533 38 1 4.9842 1.6550 -7.5413 39 1 5.3287 0.2152 -6.4893 40 1 2.8581 2.0921 -6.4030 41 1 2.9255 0.3172 -6.0207 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332067021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:00 Heat of formation + Delta-G solvation = -33.723982 kcal Electronic energy + Delta-G solvation = -28356.402793 eV Core-core repulsion = 24400.439153 eV Total energy + Delta-G solvation = -3955.963640 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.39652 -38.07236 -36.19638 -35.69063 -35.38471 -35.15104 -34.71531 -32.94929 -31.38534 -27.79630 -27.48886 -26.02804 -25.86169 -24.13373 -23.74522 -20.66144 -20.36638 -18.55796 -17.90858 -17.66560 -16.86088 -16.55561 -16.14467 -15.77683 -15.22618 -14.87174 -14.61631 -14.19583 -13.92662 -13.88593 -13.58063 -13.48241 -13.22453 -13.10456 -12.68298 -12.53495 -12.44163 -12.11397 -11.81338 -11.72306 -11.59609 -11.41887 -11.17534 -11.16104 -11.06824 -10.96146 -10.90744 -10.78850 -10.73124 -10.65955 -10.54654 -10.26724 -9.44336 -9.04558 -8.98040 -8.39689 -7.76729 -6.30825 -4.03007 1.66694 2.64935 2.82664 3.19055 3.23741 3.26331 3.31904 3.51319 3.94756 4.00382 4.27214 4.29420 4.44427 4.59668 4.67155 4.93297 5.01771 5.35194 5.40647 5.41559 5.44801 5.63957 5.66200 5.76948 5.84555 5.90766 5.95161 6.02355 6.04539 6.10598 6.17416 6.25799 6.47678 6.63174 6.74114 7.07953 7.27082 7.58895 7.69255 7.83768 8.36013 8.76860 8.94818 9.35482 10.73794 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.010570 B = 0.006747 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.261593 B = 4148.787921 C = 5733.198755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -1.010 6.010 3 C 0.109 3.891 4 S 2.757 3.243 5 O -0.980 6.980 6 O -1.014 7.014 7 N -0.830 5.830 8 C -0.282 4.282 9 H 0.085 0.915 10 C 0.042 3.958 11 N -0.870 5.870 12 Si 0.913 3.087 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.272 1.272 16 C 0.100 3.900 17 C 0.491 3.509 18 O -0.505 6.505 19 N -0.719 5.719 20 C 0.244 3.756 21 C 0.221 3.779 22 N -0.422 5.422 23 C -0.126 4.126 24 C -0.135 4.135 25 C -0.132 4.132 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.268 0.732 33 H 0.141 0.859 34 H 0.091 0.909 35 H 0.408 0.592 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.657 9.592 -7.109 13.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.849 5.849 3 C -0.038 4.038 4 S 2.772 3.228 5 O -0.964 6.964 6 O -0.998 6.998 7 N -0.661 5.661 8 C -0.415 4.415 9 H 0.103 0.897 10 C -0.164 4.164 11 N -0.510 5.510 12 Si 0.740 3.260 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.197 1.197 16 C -0.032 4.032 17 C 0.277 3.723 18 O -0.376 6.376 19 N -0.378 5.378 20 C 0.153 3.847 21 C -0.099 4.099 22 N -0.098 5.098 23 C -0.165 4.165 24 C -0.173 4.173 25 C -0.172 4.172 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.158 0.842 34 H 0.109 0.891 35 H 0.245 0.755 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.307 10.510 -5.353 12.556 hybrid contribution -0.107 -0.522 -1.334 1.436 sum 4.200 9.988 -6.687 12.732 Atomic orbital electron populations 1.21288 0.79262 1.02858 1.00423 1.57799 1.14818 1.22039 1.90197 1.21225 0.96171 0.85862 1.00495 1.03183 0.72724 0.72395 0.74542 1.93493 1.67266 1.57856 1.77752 1.93444 1.41477 1.85897 1.78964 1.52608 1.27872 1.60070 1.25501 1.18854 0.88051 1.10771 1.23825 0.89702 1.25309 0.96741 0.94548 0.99835 1.69888 1.18157 1.26169 1.36747 0.86218 0.80607 0.78313 0.80888 1.20009 1.21008 1.19703 1.21265 0.89937 0.94070 0.97930 1.22591 0.84845 0.85511 0.79349 1.90674 1.20830 1.63246 1.62882 1.46052 1.14538 1.27709 1.49454 1.18422 0.95592 0.82773 0.87928 1.28889 0.93519 0.93727 0.93726 1.81168 1.08769 1.12485 1.07351 1.23266 0.96494 1.00914 0.95817 1.22851 0.95981 1.00305 0.98135 1.23377 0.97468 1.03992 0.92394 0.93807 0.92074 0.90954 0.93373 0.91495 0.92881 0.92212 0.84177 0.89059 0.75545 0.89405 0.88287 0.90371 0.89011 0.89032 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.95 10.26 59.85 0.61 2.56 16 2 N -1.01 -20.60 3.64 -129.21 -0.47 -21.07 16 3 C 0.11 1.99 10.30 59.84 0.62 2.60 16 4 S 2.76 65.89 6.03 -107.50 -0.65 65.24 16 5 O -0.98 -26.10 16.43 -57.17 -0.94 -27.04 16 6 O -1.01 -24.87 15.83 -57.17 -0.91 -25.77 16 7 N -0.83 -20.02 2.43 -61.09 -0.15 -20.17 16 8 C -0.28 -7.29 8.58 -15.06 -0.13 -7.42 16 9 H 0.09 2.22 7.89 -52.49 -0.41 1.81 16 10 C 0.04 1.05 5.04 -17.43 -0.09 0.96 16 11 N -0.87 -22.05 11.42 55.49 0.63 -21.41 16 12 Si 0.91 20.01 29.60 -169.99 -5.03 14.98 16 13 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 15 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 16 C 0.10 2.07 5.81 -5.19 -0.03 2.04 16 17 C 0.49 9.11 7.11 -10.98 -0.08 9.03 16 18 O -0.50 -10.80 14.15 5.56 0.08 -10.72 16 19 N -0.72 -9.61 5.21 -49.37 -0.26 -9.87 16 20 C 0.24 2.94 1.09 -133.71 -0.15 2.79 16 21 C 0.22 3.40 12.88 -20.70 -0.27 3.13 16 22 N -0.42 -7.40 18.55 42.22 0.78 -6.62 16 23 C -0.13 -0.94 7.30 -25.92 -0.19 -1.13 16 24 C -0.14 -1.00 7.99 -25.92 -0.21 -1.21 16 25 C -0.13 -1.43 7.42 -25.83 -0.19 -1.62 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.98 7.92 -51.93 -0.41 0.57 16 28 H 0.07 1.38 7.78 -51.92 -0.40 0.98 16 29 H 0.05 0.93 6.82 -51.93 -0.35 0.57 16 30 H 0.07 1.08 7.79 -51.93 -0.40 0.68 16 31 H 0.05 0.91 8.01 -51.93 -0.42 0.50 16 32 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 33 H 0.14 3.02 5.57 -51.93 -0.29 2.73 16 34 H 0.09 1.78 6.87 -51.93 -0.36 1.43 16 35 H 0.41 4.08 8.63 -40.82 -0.35 3.72 16 36 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 37 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 360.85 15.07 5.44 5.44 Total: -1.00 -33.98 360.85 -7.05 -41.03 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.49 Total: 4.25 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -0.10 Total: 11.73 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: 0.54 Total: -79.14 kcal Atomic # 8 Polarization: -61.76 SS G_CDS: -1.77 Total: -63.53 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.03 Total: 14.98 kcal Atomic # 16 Polarization: 65.89 SS G_CDS: -0.65 Total: 65.24 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.98 -7.05 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332067021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.303 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds