Wall clock time and date at job start Tue Mar 31 2020 04:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31783 * 119.09785 * 2 1 4 4 C 1.32495 * 120.96605 * 179.73260 * 3 2 1 5 5 C 1.38230 * 119.17363 * 0.56500 * 4 3 2 6 6 C 1.50702 * 120.82267 * 179.72311 * 5 4 3 7 7 N 1.46503 * 109.46739 * 259.72019 * 6 5 4 8 8 S 1.65607 * 119.99606 * 164.99958 * 7 6 5 9 9 O 1.42091 * 106.40258 * 311.45902 * 8 7 6 10 10 O 1.42107 * 106.39651 * 178.53903 * 8 7 6 11 11 N 1.65593 * 107.21875 * 65.00187 * 8 7 6 12 12 C 1.46504 * 120.00121 * 269.99940 * 11 8 7 13 13 C 1.46505 * 120.00236 * 89.99414 * 11 8 7 14 14 H 1.08999 * 109.46972 * 0.02562 * 13 11 8 15 15 C 1.53001 * 109.46854 * 120.00016 * 13 11 8 16 16 C 1.50699 * 109.47201 * 239.99837 * 13 11 8 17 17 H 1.07994 * 120.00252 * 325.04522 * 16 13 11 18 18 C 1.37875 * 119.99711 * 145.04007 * 16 13 11 19 19 N 1.31513 * 120.00199 * 176.48703 * 18 16 13 20 20 Si 1.86805 * 119.99913 * 356.49465 * 18 16 13 21 21 H 1.48504 * 109.47008 * 274.91569 * 20 18 16 22 22 H 1.48490 * 109.47397 * 34.91630 * 20 18 16 23 23 H 1.48505 * 109.47005 * 154.92054 * 20 18 16 24 24 C 1.39376 * 118.35196 * 359.44545 * 5 4 3 25 25 O 1.35516 * 120.51241 * 180.24905 * 24 5 4 26 26 N 1.31768 * 119.09178 * 180.02562 * 2 1 3 27 27 H 1.09007 * 109.47143 * 269.97806 * 1 2 3 28 28 H 1.09000 * 109.47382 * 29.97643 * 1 2 3 29 29 H 1.09001 * 109.47557 * 149.98044 * 1 2 3 30 30 H 1.08001 * 120.41334 * 180.31002 * 4 3 2 31 31 H 1.08996 * 109.47004 * 139.72156 * 6 5 4 32 32 H 1.09003 * 109.47195 * 19.71717 * 6 5 4 33 33 H 0.96993 * 120.00417 * 345.00175 * 7 6 5 34 34 H 1.09003 * 109.47143 * 270.00270 * 12 11 8 35 35 H 1.09003 * 109.46694 * 29.99506 * 12 11 8 36 36 H 1.09001 * 109.47426 * 149.99778 * 12 11 8 37 37 H 1.09001 * 109.47598 * 305.54980 * 15 13 11 38 38 H 1.09007 * 109.47055 * 65.55054 * 15 13 11 39 39 H 1.08998 * 109.47291 * 185.54783 * 15 13 11 40 40 H 0.97004 * 120.00444 * 180.02562 * 19 18 16 41 41 H 0.96703 * 113.99681 * 90.00083 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1478 1.1515 0.0000 4 6 3.4720 1.1947 0.0053 5 6 4.1849 0.0104 -0.0010 6 6 5.6919 0.0162 -0.0016 7 7 6.1806 -0.2215 -1.3621 8 16 7.7613 0.0949 -1.7411 9 8 8.0409 1.3957 -1.2423 10 8 7.9268 -0.2666 -3.1054 11 7 8.6952 -0.9534 -0.8631 12 6 9.1663 -0.5734 0.4711 13 6 9.0504 -2.2610 -1.4203 14 1 8.6134 -2.3634 -2.4136 15 6 10.5728 -2.3768 -1.5190 16 6 8.5208 -3.3500 -0.5233 17 1 8.4969 -3.2044 0.5465 18 6 8.0668 -4.5322 -1.0684 19 7 7.6693 -5.5088 -0.2826 20 14 8.0164 -4.7467 -2.9235 21 1 6.7485 -4.1831 -3.4527 22 1 9.1676 -4.0358 -3.5354 23 1 8.0930 -6.1918 -3.2569 24 6 3.4753 -1.1892 -0.0009 25 8 4.1299 -2.3758 -0.0019 26 7 2.1476 -1.1514 -0.0005 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5141 30 1 3.9881 2.1434 0.0103 31 1 6.0585 -0.7697 0.6587 32 1 6.0516 0.9833 0.3500 33 1 5.5783 -0.5641 -2.0408 34 1 10.1304 -0.0720 0.3869 35 1 8.4450 0.1012 0.9325 36 1 9.2737 -1.4666 1.0866 37 1 10.9654 -1.5329 -2.0863 38 1 11.0031 -2.3731 -0.5175 39 1 10.8345 -3.3069 -2.0234 40 1 7.3502 -6.3407 -0.6661 41 1 4.3206 -2.7205 0.8813 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337782001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:50 Heat of formation + Delta-G solvation = -63.003797 kcal Electronic energy + Delta-G solvation = -27434.059235 eV Core-core repulsion = 23476.825928 eV Total energy + Delta-G solvation = -3957.233308 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.38891 -37.72609 -36.84811 -36.36100 -35.68625 -35.38305 -33.35970 -32.52058 -32.22847 -29.97394 -29.20030 -25.74971 -25.20909 -25.09999 -24.40722 -22.16734 -20.73575 -19.02279 -18.76683 -18.16994 -17.58579 -17.21467 -16.63046 -16.38593 -15.87303 -15.23832 -15.13104 -14.37488 -14.23006 -14.03344 -13.64925 -13.59670 -13.33115 -13.24801 -12.71008 -12.65520 -12.62044 -12.53860 -12.15255 -12.04172 -11.81349 -11.73387 -11.66345 -11.49821 -11.20901 -10.84284 -10.72337 -10.70556 -10.66899 -10.41386 -9.85164 -9.55166 -9.49389 -9.34659 -9.19641 -8.67835 -8.11176 -6.24408 -4.24809 0.54482 0.83888 1.18130 3.20470 3.23313 3.32274 3.35208 3.39374 3.56015 3.80513 4.02673 4.25380 4.30774 4.46252 4.67866 4.87614 4.98057 5.09527 5.16443 5.30392 5.37198 5.46463 5.52817 5.69001 5.77424 5.93446 6.03298 6.11273 6.14635 6.33425 6.41855 6.53018 6.65258 6.75189 6.91643 7.12526 7.19623 7.42806 7.43437 7.63118 7.90472 8.36010 8.78493 9.38278 10.87071 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.012996 B = 0.004944 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.006827 B = 5661.541546 C = 6932.185125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.339 3.661 3 N -0.530 5.530 4 C 0.179 3.821 5 C -0.226 4.226 6 C 0.181 3.819 7 N -1.121 6.121 8 S 2.777 3.223 9 O -0.996 6.996 10 O -0.984 6.984 11 N -0.985 5.985 12 C 0.104 3.896 13 C 0.234 3.766 14 H 0.056 0.944 15 C -0.144 4.144 16 C -0.518 4.518 17 H 0.082 0.918 18 C 0.084 3.916 19 N -0.887 5.887 20 Si 0.858 3.142 21 H -0.270 1.270 22 H -0.260 1.260 23 H -0.285 1.285 24 C 0.386 3.614 25 O -0.458 6.458 26 N -0.541 5.541 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.175 0.825 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.414 0.586 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.027 0.973 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.266 0.734 41 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.533 10.648 4.097 14.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.072 3.928 3 N -0.246 5.246 4 C 0.013 3.987 5 C -0.233 4.233 6 C 0.053 3.947 7 N -0.879 5.879 8 S 2.786 3.214 9 O -0.979 6.979 10 O -0.968 6.968 11 N -0.827 5.827 12 C -0.042 4.042 13 C 0.130 3.870 14 H 0.073 0.927 15 C -0.204 4.204 16 C -0.557 4.557 17 H 0.100 0.900 18 C -0.121 4.121 19 N -0.524 5.524 20 Si 0.685 3.315 21 H -0.196 1.196 22 H -0.185 1.185 23 H -0.211 1.211 24 C 0.197 3.803 25 O -0.266 6.266 26 N -0.267 5.267 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.192 0.808 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.246 0.754 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -9.097 11.209 3.047 14.753 hybrid contribution 0.508 -1.037 -0.526 1.269 sum -8.589 10.171 2.520 13.549 Atomic orbital electron populations 1.20600 0.85452 1.04330 1.04005 1.23116 0.98056 0.82405 0.89238 1.68304 1.09862 1.30099 1.16327 1.23198 0.89105 0.98052 0.88312 1.21821 0.98701 0.94525 1.08241 1.19779 0.87977 1.02438 0.84474 1.56012 1.30505 1.83560 1.17802 1.02032 0.72636 0.73379 0.73305 1.93541 1.84170 1.38361 1.81840 1.93585 1.85261 1.84477 1.33527 1.57903 1.65212 1.31331 1.28255 1.21245 0.98269 1.00543 0.84186 1.19097 0.92915 0.80102 0.94845 0.92665 1.22176 0.97995 0.99542 1.00661 1.21119 1.41764 0.97693 0.95160 0.89987 1.24906 0.93982 0.95719 0.97480 1.69856 1.42380 1.05051 1.35118 0.87150 0.80057 0.77596 0.86724 1.19568 1.18475 1.21090 1.19478 0.86478 0.86197 0.88101 1.84841 1.74041 1.33325 1.34395 1.67904 1.09890 1.31755 1.17146 0.89422 0.89417 0.89495 0.80779 0.89764 0.89488 0.75360 0.93756 0.93015 0.89979 0.95386 0.92840 0.92710 0.92375 0.72441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.32 36.00 0.37 -0.35 16 2 C 0.34 4.20 7.64 -157.23 -1.20 2.99 16 3 N -0.53 -6.53 10.33 -10.79 -0.11 -6.64 16 4 C 0.18 2.04 10.96 -17.27 -0.19 1.85 16 5 C -0.23 -2.85 5.32 -104.20 -0.55 -3.40 16 6 C 0.18 2.34 6.12 -5.19 -0.03 2.31 16 7 N -1.12 -17.74 6.05 -11.65 -0.07 -17.81 16 8 S 2.78 51.79 6.09 -107.50 -0.66 51.13 16 9 O -1.00 -18.90 16.68 -57.17 -0.95 -19.86 16 10 O -0.98 -21.62 16.70 -57.17 -0.95 -22.58 16 11 N -0.98 -18.80 3.12 -115.84 -0.36 -19.16 16 12 C 0.10 1.65 9.45 59.85 0.57 2.21 16 13 C 0.23 5.20 2.26 -69.08 -0.16 5.04 16 14 H 0.06 1.33 4.12 -51.93 -0.21 1.12 16 15 C -0.14 -2.93 9.09 37.16 0.34 -2.59 16 16 C -0.52 -12.80 8.72 -34.44 -0.30 -13.10 16 17 H 0.08 2.12 6.82 -52.49 -0.36 1.76 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 19 N -0.89 -24.64 13.96 55.43 0.77 -23.87 16 20 Si 0.86 20.78 26.91 -169.99 -4.57 16.21 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.26 -6.15 6.73 56.52 0.38 -5.76 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.39 5.47 7.81 -16.70 -0.13 5.34 16 25 O -0.46 -6.87 12.94 -18.24 -0.24 -7.10 16 26 N -0.54 -7.69 10.36 -10.79 -0.11 -7.80 16 27 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.18 1.50 8.06 -52.49 -0.42 1.07 16 31 H 0.08 1.08 7.94 -51.93 -0.41 0.67 16 32 H 0.09 0.97 7.65 -51.93 -0.40 0.57 16 33 H 0.41 6.55 8.64 -34.47 -0.30 6.25 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.69 7.79 -51.93 -0.40 0.29 16 36 H 0.08 1.34 6.56 -51.93 -0.34 1.00 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 1.01 7.86 -51.93 -0.41 0.60 16 39 H 0.05 1.12 7.96 -51.93 -0.41 0.71 16 40 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.41 4.57 9.06 45.56 0.41 4.99 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -33.53 358.74 -7.76 -41.29 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -4.53 Total: 8.35 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.39 Total: 2.42 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: 0.12 Total: -75.27 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -2.14 Total: -49.53 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.57 Total: 16.21 kcal Atomic # 16 Polarization: 51.79 SS G_CDS: -0.66 Total: 51.13 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.53 -7.76 -41.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337782001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.711 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds