Wall clock time and date at job start Tue Mar 31 2020 04:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29946 * 126.28420 * 2 1 4 4 O 1.21296 * 110.25095 * 179.97438 * 3 2 1 5 5 C 1.33640 * 109.81192 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.55427 * 179.97438 * 5 4 3 7 7 H 1.09002 * 110.00026 * 193.92512 * 6 5 4 8 8 C 1.54340 * 109.99022 * 72.89102 * 6 5 4 9 9 C 1.55162 * 103.01741 * 218.66568 * 8 6 5 10 10 C 1.54904 * 101.58083 * 35.30844 * 9 8 6 11 11 N 1.47023 * 109.88297 * 315.02402 * 6 5 4 12 12 S 1.65598 * 125.64770 * 298.39112 * 11 6 5 13 13 O 1.42100 * 106.39953 * 156.17392 * 12 11 6 14 14 O 1.42105 * 106.40088 * 23.26082 * 12 11 6 15 15 N 1.65593 * 107.21993 * 269.71994 * 12 11 6 16 16 C 1.46502 * 119.99605 * 269.99784 * 15 12 11 17 17 C 1.46499 * 120.00395 * 90.00069 * 15 12 11 18 18 C 1.50701 * 109.46992 * 264.99836 * 17 15 12 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 15 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47094 * 90.00289 * 22 20 18 24 24 H 1.48505 * 109.47195 * 210.00171 * 22 20 18 25 25 H 1.48493 * 109.47449 * 330.00136 * 22 20 18 26 26 N 1.31132 * 106.89460 * 0.22398 * 5 4 3 27 27 H 1.09007 * 109.46943 * 90.02444 * 1 2 3 28 28 H 1.08994 * 109.47264 * 210.02296 * 1 2 3 29 29 H 1.09000 * 109.47342 * 330.03085 * 1 2 3 30 30 H 1.09000 * 110.84669 * 100.19706 * 8 6 5 31 31 H 1.08994 * 110.66774 * 337.04837 * 8 6 5 32 32 H 1.08998 * 111.00270 * 277.22997 * 9 8 6 33 33 H 1.09007 * 111.03225 * 153.39401 * 9 8 6 34 34 H 1.09002 * 110.36516 * 204.15352 * 10 9 8 35 35 H 1.08999 * 110.46183 * 81.87724 * 10 9 8 36 36 H 1.09000 * 109.47587 * 270.00096 * 16 15 12 37 37 H 1.08997 * 109.47205 * 30.00247 * 16 15 12 38 38 H 1.09003 * 109.46728 * 150.00070 * 16 15 12 39 39 H 1.09002 * 109.47391 * 144.99826 * 17 15 12 40 40 H 1.09001 * 109.46813 * 24.99883 * 17 15 12 41 41 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7125 0.0005 5 6 3.5299 -0.6210 0.0003 6 6 4.7970 -1.4368 0.0003 7 1 4.5723 -2.4745 -0.2464 8 6 5.4715 -1.3639 1.3865 9 6 6.9814 -1.2886 1.0370 10 6 6.9583 -0.4443 -0.2615 11 7 5.7469 -0.8851 -0.9769 12 16 5.4950 -0.7711 -2.6096 13 8 6.3417 0.2711 -3.0744 14 8 4.0866 -0.7710 -2.7992 15 7 6.0586 -2.1709 -3.2915 16 6 7.4526 -2.2610 -3.7328 17 6 5.1632 -3.3191 -3.4535 18 6 5.3234 -4.2505 -2.2796 19 1 6.0219 -4.0109 -1.4915 20 6 4.5774 -5.4080 -2.2112 21 7 3.7265 -5.6995 -3.1706 22 14 4.7754 -6.5621 -0.7558 23 1 3.8200 -6.1780 0.3141 24 1 4.5002 -7.9559 -1.1882 25 1 6.1635 -6.4700 -0.2363 26 7 2.3030 -1.0840 -0.0052 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3634 0.8902 0.5133 30 1 5.2550 -2.2582 1.9708 31 1 5.1546 -0.4690 1.9220 32 1 7.3891 -2.2820 0.8499 33 1 7.5402 -0.7809 1.8233 34 1 7.8466 -0.6451 -0.8604 35 1 6.8935 0.6177 -0.0244 36 1 7.5263 -1.9401 -4.7719 37 1 8.0735 -1.6180 -3.1091 38 1 7.7952 -3.2921 -3.6459 39 1 5.4130 -3.8477 -4.3734 40 1 4.1315 -2.9711 -3.5031 41 1 3.2019 -6.5140 -3.1227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352394718.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:03 Heat of formation + Delta-G solvation = 1.743930 kcal Electronic energy + Delta-G solvation = -28529.375429 eV Core-core repulsion = 24574.949793 eV Total energy + Delta-G solvation = -3954.425636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.24459 -38.63213 -36.78897 -35.74041 -35.55170 -35.32634 -32.87144 -32.52757 -30.91387 -29.39279 -28.63083 -27.82893 -25.15087 -23.87913 -22.96286 -22.34409 -21.62527 -20.87734 -18.67266 -17.76980 -17.59114 -17.14059 -16.71136 -16.37787 -16.14782 -15.56280 -14.72319 -14.36653 -14.03270 -13.78720 -13.53061 -13.43499 -13.32209 -13.21550 -12.88145 -12.70098 -12.40524 -12.22093 -12.01673 -11.86251 -11.78617 -11.61657 -11.43004 -11.24401 -11.20798 -11.17786 -10.98589 -10.84690 -10.82282 -10.67417 -10.55991 -10.15441 -9.83976 -9.64168 -9.04218 -8.53059 -8.12275 -6.14595 -4.22351 1.01993 1.44583 2.54485 3.02196 3.22790 3.27457 3.30664 3.33459 3.83887 4.06732 4.28785 4.32467 4.39355 4.53423 4.89652 4.98880 5.12636 5.19702 5.35626 5.44774 5.47554 5.51490 5.56085 5.65608 5.72709 5.78465 5.80286 5.90910 6.00859 6.06986 6.11756 6.16791 6.23985 6.35637 6.38531 6.55736 7.27919 7.36914 7.56838 7.80786 8.09845 8.46461 8.81801 9.44051 10.93485 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.010052 B = 0.006682 C = 0.005547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.933197 B = 4189.452888 C = 5046.428803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.168 3.832 3 N -0.393 5.393 4 O 0.074 5.926 5 C 0.182 3.818 6 C 0.244 3.756 7 H 0.143 0.857 8 C -0.119 4.119 9 C -0.126 4.126 10 C 0.120 3.880 11 N -1.009 6.009 12 S 2.791 3.209 13 O -0.988 6.988 14 O -0.967 6.967 15 N -0.992 5.992 16 C 0.105 3.895 17 C 0.243 3.757 18 C -0.544 4.544 19 H 0.064 0.936 20 C 0.067 3.933 21 N -0.885 5.885 22 Si 0.890 3.110 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.273 1.273 26 N -0.458 5.458 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.051 0.949 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.209 8.076 9.160 12.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.105 4.105 3 N -0.103 5.103 4 O 0.017 5.983 5 C -0.041 4.041 6 C 0.135 3.865 7 H 0.160 0.840 8 C -0.159 4.159 9 C -0.165 4.165 10 C -0.005 4.005 11 N -0.846 5.846 12 S 2.801 3.199 13 O -0.973 6.973 14 O -0.951 6.951 15 N -0.834 5.834 16 C -0.041 4.041 17 C 0.121 3.879 18 C -0.584 4.584 19 H 0.082 0.918 20 C -0.136 4.136 21 N -0.523 5.523 22 Si 0.718 3.282 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.197 1.197 26 N -0.192 5.192 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.030 9.183 8.484 12.864 hybrid contribution 0.292 -1.184 0.728 1.420 sum 3.322 7.999 9.212 12.644 Atomic orbital electron populations 1.20100 0.83222 1.04150 1.04353 1.25855 1.00486 0.83659 1.00473 1.74515 0.89517 1.24175 1.22101 1.85211 1.22321 1.24960 1.65853 1.29222 0.97332 0.81969 0.95527 1.19925 0.79933 0.95700 0.90949 0.83978 1.22713 0.95485 1.03927 0.93781 1.22815 0.95318 1.01523 0.96840 1.22014 0.86610 0.98508 0.93339 1.59454 1.24521 1.76361 1.24242 1.01699 0.73360 0.73190 0.71662 1.93551 1.69578 1.55065 1.79060 1.93608 1.30310 1.86993 1.84165 1.57674 1.19317 1.32530 1.73923 1.21258 0.81459 1.02878 0.98544 1.19265 0.88752 0.81917 0.97946 1.21497 1.23781 1.06051 1.07023 0.91824 1.24952 0.94792 0.97701 0.96204 1.69927 1.24429 1.25535 1.32398 0.86622 0.78537 0.80280 0.82796 1.20181 1.21133 1.19750 1.71881 0.99395 1.29018 1.18879 0.89312 0.89085 0.89894 0.88665 0.90294 0.89558 0.89571 0.90265 0.91115 0.93630 0.92914 0.90546 0.94290 0.93119 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.51 36.01 0.38 -0.38 16 2 C 0.17 3.00 8.22 -156.38 -1.28 1.71 16 3 N -0.39 -7.30 12.16 30.89 0.38 -6.92 16 4 O 0.07 1.37 11.31 18.11 0.20 1.57 16 5 C 0.18 3.37 5.73 -13.06 -0.07 3.30 16 6 C 0.24 4.00 3.61 -68.09 -0.25 3.75 16 7 H 0.14 2.62 7.71 -51.93 -0.40 2.22 16 8 C -0.12 -1.36 6.47 -24.88 -0.16 -1.52 16 9 C -0.13 -1.22 7.09 -24.58 -0.17 -1.39 16 10 C 0.12 1.46 6.98 -2.53 -0.02 1.45 16 11 N -1.01 -16.76 3.45 -105.63 -0.36 -17.12 16 12 S 2.79 56.88 6.27 -107.50 -0.67 56.20 16 13 O -0.99 -20.59 16.80 -57.17 -0.96 -21.55 16 14 O -0.97 -23.17 15.01 -57.17 -0.86 -24.03 16 15 N -0.99 -20.30 3.23 -123.05 -0.40 -20.70 16 16 C 0.11 1.75 10.31 59.85 0.62 2.37 16 17 C 0.24 5.95 5.41 -5.19 -0.03 5.92 16 18 C -0.54 -13.61 8.95 -34.44 -0.31 -13.92 16 19 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 20 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 22 Si 0.89 19.85 29.54 -169.99 -5.02 14.83 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 N -0.46 -9.06 11.55 -9.87 -0.11 -9.17 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.81 7.84 -51.93 -0.41 0.40 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.60 8.14 -51.92 -0.42 0.17 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 38 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 39 H 0.04 0.99 8.11 -51.93 -0.42 0.57 16 40 H 0.05 1.39 6.91 -51.93 -0.36 1.03 16 41 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -33.88 358.47 -8.83 -42.71 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.76 Total: -0.05 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -1.40 Total: 2.96 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: 0.24 Total: -78.04 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -1.61 Total: -44.01 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 56.88 SS G_CDS: -0.67 Total: 56.20 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.88 -8.83 -42.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352394718.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.453 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds