Wall clock time and date at job start Tue Mar 31 2020 05:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73780 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73749 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00100 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 N 1.46502 * 109.46547 * 179.97438 * 16 14 13 18 18 S 1.65611 * 119.99729 * 165.00226 * 17 16 14 19 19 O 1.42091 * 106.39945 * 178.54420 * 18 17 16 20 20 O 1.42103 * 106.40098 * 311.46060 * 18 17 16 21 21 C 1.76195 * 107.21903 * 64.99857 * 18 17 16 22 22 C 1.39875 * 126.03774 * 90.02325 * 21 18 17 23 23 N 1.30836 * 108.20182 * 179.97438 * 22 21 18 24 24 N 1.40086 * 108.20570 * 359.97438 * 23 22 21 25 25 C 1.46501 * 126.03665 * 179.97438 * 24 23 22 26 26 C 1.34944 * 107.92510 * 359.76475 * 24 23 22 27 27 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 28 28 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 29 29 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 31 31 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 32 32 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 33 33 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 34 34 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 35 35 H 1.09002 * 109.47036 * 60.00566 * 16 14 13 36 36 H 0.96995 * 120.00362 * 345.00241 * 17 16 14 37 37 H 1.08000 * 125.90104 * 0.02562 * 22 21 18 38 38 H 1.09004 * 109.47150 * 89.98049 * 25 24 23 39 39 H 1.08997 * 109.47240 * 209.97715 * 25 24 23 40 40 H 1.09001 * 109.47385 * 329.98241 * 25 24 23 41 41 H 1.07998 * 126.12546 * 180.23802 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8532 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 7 -1.3052 3.8650 2.5548 18 16 -2.1365 4.3203 3.9128 19 8 -3.3901 4.8194 3.4673 20 8 -2.0109 3.2493 4.8382 21 6 -1.2775 5.6886 4.6160 22 6 -1.5008 7.0383 4.3244 23 7 -0.6727 7.7537 5.0415 24 7 0.1044 6.8807 5.8137 25 6 1.1560 7.2683 6.7572 26 6 -0.2900 5.6198 5.5385 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.9924 1.1425 -0.6140 33 1 2.2853 2.1184 1.9978 34 1 0.0905 2.6048 3.4843 35 1 0.7469 4.1463 2.8829 36 1 -1.7182 3.9516 1.6815 37 1 -2.2311 7.4234 3.6282 38 1 0.7213 7.4136 7.7462 39 1 1.9101 6.4826 6.8037 40 1 1.6190 8.1970 6.4238 41 1 0.1126 4.7173 5.9742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358066896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:28 Heat of formation + Delta-G solvation = -33.815290 kcal Electronic energy + Delta-G solvation = -26315.944861 eV Core-core repulsion = 22359.977262 eV Total energy + Delta-G solvation = -3955.967599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.66708 -39.45892 -37.26763 -35.91308 -35.74072 -34.41761 -33.85070 -32.54097 -31.57590 -30.89150 -27.94302 -27.48873 -26.28357 -22.38724 -22.36331 -21.73591 -20.89650 -19.75089 -19.56011 -18.41808 -18.13460 -17.44028 -16.51694 -16.21198 -16.03875 -15.79899 -15.41183 -15.27581 -14.90938 -14.55790 -13.71550 -13.63135 -13.44394 -13.32951 -13.24819 -13.09779 -12.71117 -12.48207 -12.30141 -12.22295 -12.09664 -11.99026 -11.96640 -11.77245 -10.99895 -10.98094 -10.75788 -10.51667 -10.04573 -9.87153 -9.79869 -9.76340 -9.62446 -9.34346 -8.95961 -8.58104 -8.21299 -6.61916 -4.30459 0.33686 1.14216 1.91981 1.96599 2.98696 3.04157 3.32595 3.41874 3.55121 3.70567 3.77760 3.90413 4.18012 4.35964 4.39078 4.59363 4.65364 4.87926 4.88149 5.08180 5.11268 5.13389 5.20995 5.24909 5.65182 5.97144 5.98174 6.03127 6.18512 6.29823 6.63094 6.71132 6.82409 6.93286 6.97160 7.00535 7.24976 7.27806 7.55015 8.15203 8.32210 8.60064 8.82461 9.40208 10.78685 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.016924 B = 0.003116 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.062280 B = 8983.078498 C = 9978.424373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.241 3.759 4 H 0.050 0.950 5 C -0.611 4.611 6 H 0.062 0.938 7 C 0.036 3.964 8 N -0.903 5.903 9 Si 1.049 2.951 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.287 1.287 13 N -0.697 5.697 14 C 0.500 3.500 15 O -0.541 6.541 16 C 0.097 3.903 17 N -1.103 6.103 18 S 2.734 3.266 19 O -0.958 6.958 20 O -0.964 6.964 21 C -0.818 4.818 22 C 0.136 3.864 23 N -0.294 5.294 24 N -0.362 5.362 25 C 0.090 3.910 26 C 0.177 3.823 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.268 0.732 33 H 0.394 0.606 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.429 0.571 37 H 0.200 0.800 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.279 10.137 16.308 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C 0.138 3.862 4 H 0.068 0.932 5 C -0.649 4.649 6 H 0.080 0.920 7 C -0.170 4.170 8 N -0.537 5.537 9 Si 0.877 3.123 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.214 1.214 13 N -0.345 5.345 14 C 0.283 3.717 15 O -0.419 6.419 16 C -0.034 4.034 17 N -0.866 5.866 18 S 2.820 3.180 19 O -0.948 6.948 20 O -0.953 6.953 21 C -0.916 4.916 22 C -0.053 4.053 23 N -0.113 5.113 24 N -0.139 5.139 25 C -0.051 4.051 26 C 0.023 3.977 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.227 0.773 34 H 0.123 0.877 35 H 0.106 0.894 36 H 0.267 0.733 37 H 0.216 0.784 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -9.837 10.363 15.019 20.730 hybrid contribution 0.647 0.416 1.561 1.740 sum -9.190 10.779 16.579 21.806 Atomic orbital electron populations 1.21909 0.97063 0.99197 1.02195 1.22260 0.94085 0.99792 1.01491 1.19288 0.95958 0.88615 0.82354 0.93205 1.22149 0.89643 1.48343 1.04813 0.91990 1.25702 0.97479 0.93529 1.00246 1.70838 1.04439 1.42350 1.36053 0.83941 0.75305 0.77239 0.75796 1.20658 1.19849 1.21394 1.46203 1.14302 1.55687 1.18335 1.20190 0.83012 0.79605 0.88873 1.90665 1.50907 1.59781 1.40537 1.21083 0.83992 0.99394 0.98919 1.55244 1.26260 1.79395 1.25718 1.00644 0.72355 0.72815 0.72183 1.93581 1.38551 1.81420 1.81257 1.93571 1.86563 1.52382 1.62821 1.31723 1.21880 1.16875 1.21140 1.23585 0.96056 0.89326 0.96349 1.77469 1.07888 1.16550 1.09368 1.49135 1.28346 1.04268 1.32162 1.22106 0.88001 1.03831 0.91163 1.22551 0.92205 0.90125 0.92866 0.93050 0.92846 0.94842 0.92173 0.92620 0.92131 0.77279 0.87729 0.89409 0.73269 0.78375 0.89918 0.88562 0.88549 0.78864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.52 37.16 0.32 -2.49 16 2 C -0.14 -2.91 5.20 -26.73 -0.14 -3.05 16 3 C 0.24 5.40 1.81 -69.08 -0.13 5.28 16 4 H 0.05 1.24 6.07 -51.93 -0.32 0.92 16 5 C -0.61 -15.74 9.09 -34.44 -0.31 -16.05 16 6 H 0.06 1.65 7.95 -52.48 -0.42 1.24 16 7 C 0.04 1.00 5.42 -17.82 -0.10 0.90 16 8 N -0.90 -26.30 13.70 55.43 0.76 -25.54 16 9 Si 1.05 24.72 25.39 -169.99 -4.32 20.41 16 10 H -0.28 -6.27 6.73 56.52 0.38 -5.89 16 11 H -0.27 -6.21 6.38 56.52 0.36 -5.85 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.70 -12.50 5.03 -54.93 -0.28 -12.77 16 14 C 0.50 8.27 6.49 -10.98 -0.07 8.20 16 15 O -0.54 -10.61 12.87 5.56 0.07 -10.53 16 16 C 0.10 1.11 6.70 -5.19 -0.03 1.08 16 17 N -1.10 -12.79 5.93 -11.65 -0.07 -12.86 16 18 S 2.73 30.82 5.88 -107.50 -0.63 30.19 16 19 O -0.96 -13.33 17.87 -57.17 -1.02 -14.35 16 20 O -0.96 -12.72 17.31 -57.17 -0.99 -13.71 16 21 C -0.82 -8.06 6.14 -40.01 -0.25 -8.30 16 22 C 0.14 1.40 11.82 -17.36 -0.21 1.20 16 23 N -0.29 -3.21 12.58 30.63 0.39 -2.83 16 24 N -0.36 -3.04 4.01 -68.16 -0.27 -3.32 16 25 C 0.09 0.36 11.47 59.85 0.69 1.04 16 26 C 0.18 1.42 11.23 -17.22 -0.19 1.23 16 27 H 0.05 0.96 5.64 -51.93 -0.29 0.67 16 28 H 0.05 1.07 7.87 -51.93 -0.41 0.66 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 1.33 4.43 -51.93 -0.23 1.10 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.27 7.71 8.72 -40.82 -0.36 7.35 16 33 H 0.39 6.04 8.53 -40.82 -0.35 5.69 16 34 H 0.10 1.00 7.75 -51.93 -0.40 0.60 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.43 5.29 7.70 -34.48 -0.27 5.02 16 37 H 0.20 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.19 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -36.79 354.31 -6.72 -43.52 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.28 Total: 7.44 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -0.42 Total: -10.97 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.53 Total: -57.32 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -1.94 Total: -38.60 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -4.32 Total: 20.41 kcal Atomic # 16 Polarization: 30.82 SS G_CDS: -0.63 Total: 30.19 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.79 -6.72 -43.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358066896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.701 kcal (2) G-P(sol) polarization free energy of solvation -36.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds