Wall clock time and date at job start Tue Mar 31 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47065 * 179.97438 * 10 9 7 12 12 O 1.21290 * 119.99805 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00483 * 180.02562 * 11 10 9 14 14 C 1.46926 * 120.62453 * 359.71775 * 13 11 10 15 15 C 1.53629 * 108.54117 * 126.37250 * 14 13 11 16 16 C 1.53035 * 109.24411 * 54.85441 * 15 14 13 17 17 C 1.53040 * 109.53868 * 298.51471 * 16 15 14 18 18 H 1.09007 * 109.49446 * 301.41087 * 17 16 15 19 19 N 1.46504 * 109.49978 * 181.31735 * 17 16 15 20 20 C 1.47063 * 126.30024 * 299.84485 * 19 17 16 21 21 C 1.54310 * 109.96793 * 150.90596 * 20 19 17 22 22 C 1.55605 * 104.19303 * 45.50738 * 21 20 19 23 23 S 1.66996 * 126.30105 * 120.16080 * 19 17 16 24 24 O 1.42107 * 105.13413 * 298.88867 * 23 19 17 25 25 O 1.42103 * 105.13693 * 68.56567 * 23 19 17 26 26 C 1.46924 * 120.63374 * 180.02562 * 13 11 10 27 27 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 29 29 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 30 30 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 31 31 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 32 32 H 1.09005 * 109.58651 * 246.20336 * 14 13 11 33 33 H 1.08996 * 109.58941 * 6.62577 * 14 13 11 34 34 H 1.09000 * 109.63216 * 294.86268 * 15 14 13 35 35 H 1.08998 * 109.42817 * 174.72547 * 15 14 13 36 36 H 1.08993 * 109.46199 * 178.49105 * 16 15 14 37 37 H 1.09002 * 109.46005 * 58.52919 * 16 15 14 38 38 H 1.09001 * 109.35797 * 271.18894 * 20 19 17 39 39 H 1.09004 * 109.35190 * 30.82833 * 20 19 17 40 40 H 1.09000 * 110.65105 * 286.77158 * 21 20 19 41 41 H 1.08999 * 110.38458 * 164.11288 * 21 20 19 42 42 H 1.09002 * 111.16868 * 204.05939 * 22 21 20 43 43 H 1.09001 * 111.16211 * 79.79284 * 22 21 20 44 44 H 1.09000 * 109.58422 * 353.37126 * 26 13 11 45 45 H 1.08998 * 109.58517 * 113.65161 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5286 -2.6365 0.0009 12 8 6.1350 -1.5861 0.0005 13 7 6.2025 -3.8036 0.0003 14 6 5.4819 -5.0840 0.0059 15 6 5.9900 -5.9357 -1.1674 16 6 7.5114 -6.0707 -1.0711 17 6 8.1552 -4.6856 -1.1674 18 1 7.8711 -4.2171 -2.1097 19 7 9.6129 -4.8187 -1.1066 20 6 10.3891 -5.3957 0.0012 21 6 11.6949 -6.0167 -0.5376 22 6 12.2532 -4.9426 -1.5154 23 16 10.6994 -4.3363 -2.2795 24 8 10.3622 -5.0955 -3.4324 25 8 10.6436 -2.9164 -2.2755 26 6 7.6717 -3.8198 0.0008 27 1 -0.4850 0.8400 -0.0004 28 1 3.8753 -0.6803 -0.8889 29 1 3.8746 -0.6799 0.8911 30 1 3.6579 -3.1505 0.8908 31 1 3.6587 -3.1502 -0.8892 32 1 5.6679 -5.6039 0.9458 33 1 4.4133 -4.9024 -0.1083 34 1 5.7264 -5.4554 -2.1097 35 1 5.5335 -6.9244 -1.1222 36 1 7.8728 -6.6966 -1.8869 37 1 7.7757 -6.5284 -0.1178 38 1 10.6283 -4.6129 0.7210 39 1 9.7977 -6.1683 0.4926 40 1 11.4881 -6.9455 -1.0694 41 1 12.3969 -6.1915 0.2777 42 1 12.9092 -5.3920 -2.2609 43 1 12.7631 -4.1453 -0.9746 44 1 8.0483 -2.8037 -0.1168 45 1 8.0322 -4.2365 0.9413 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408233979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:25 Heat of formation + Delta-G solvation = -101.089874 kcal Electronic energy + Delta-G solvation = -27134.450205 eV Core-core repulsion = 23279.105704 eV Total energy + Delta-G solvation = -3855.344501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.11347 -38.25144 -37.32546 -36.74260 -36.11279 -33.88565 -33.44684 -32.13106 -31.34061 -29.63311 -26.87085 -26.43914 -24.87191 -23.53212 -22.57884 -21.46329 -20.27685 -19.24550 -18.58311 -17.69111 -17.39858 -17.07207 -16.22195 -16.20703 -15.54090 -15.40327 -14.95960 -14.93160 -14.62815 -14.39276 -14.09160 -13.92295 -13.78412 -13.43657 -13.22071 -12.96690 -12.57264 -12.52766 -12.37250 -12.29474 -12.24049 -12.09591 -11.81282 -11.73402 -11.37309 -11.16063 -11.04131 -10.96623 -10.94597 -10.82201 -10.10524 -10.00535 -9.75785 -9.48774 -9.21239 -9.12267 -8.50596 -8.45878 -6.00974 -3.99571 -0.18663 2.06991 3.08074 3.16000 3.27043 3.40928 3.41690 3.47369 3.58872 3.81125 4.01295 4.32539 4.37684 4.51410 4.53666 4.67284 4.76748 4.80333 4.85757 4.93990 5.01457 5.11558 5.16331 5.23465 5.28395 5.31667 5.34774 5.44467 5.58825 5.68478 5.78260 5.79526 5.96471 6.05888 6.07033 6.10220 6.16409 6.62793 6.73274 7.39463 7.45920 7.61353 7.81472 8.50749 8.62612 9.01825 9.62384 11.11776 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.021466 B = 0.002809 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.056793 B = 9964.438476 C =10629.461737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.261 1.261 6 H -0.289 1.289 7 C -0.524 4.524 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.120 4.120 11 C 0.512 3.488 12 O -0.535 6.535 13 N -0.624 5.624 14 C 0.105 3.895 15 C -0.135 4.135 16 C -0.128 4.128 17 C 0.178 3.822 18 H 0.092 0.908 19 N -0.985 5.985 20 C 0.075 3.925 21 C -0.123 4.123 22 C -0.600 4.600 23 S 2.566 3.434 24 O -0.956 6.956 25 O -0.949 6.949 26 C 0.102 3.898 27 H 0.263 0.737 28 H 0.019 0.981 29 H 0.023 0.977 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.098 0.902 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.869 -19.600 0.385 32.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.185 1.185 6 H -0.215 1.215 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.038 4.038 10 C -0.159 4.159 11 C 0.303 3.697 12 O -0.411 6.411 13 N -0.360 5.360 14 C -0.018 4.018 15 C -0.174 4.174 16 C -0.167 4.167 17 C 0.072 3.928 18 H 0.110 0.890 19 N -0.826 5.826 20 C -0.051 4.051 21 C -0.162 4.162 22 C -0.731 4.731 23 S 2.663 3.337 24 O -0.945 6.945 25 O -0.939 6.939 26 C -0.023 4.023 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.128 0.872 42 H 0.158 0.842 43 H 0.160 0.840 44 H 0.117 0.883 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 25.749 -18.368 -0.503 31.633 hybrid contribution 0.795 0.404 0.539 1.042 sum 26.544 -17.964 0.037 32.051 Atomic orbital electron populations 1.69912 1.06286 1.26961 1.51132 1.24968 0.94703 0.99232 0.94322 0.86803 0.80620 0.83379 0.78801 1.20217 1.18513 1.21475 1.21100 0.89236 0.94536 1.51305 0.90933 1.19389 0.96423 0.90227 0.97712 1.21689 0.87842 1.03242 1.03160 1.21622 0.91649 0.82289 0.74161 1.90666 1.70630 1.31003 1.48757 1.48246 1.05534 1.06612 1.75594 1.21880 0.97957 0.83862 0.98114 1.22025 0.94972 1.00792 0.99636 1.21915 0.95442 0.96452 1.02917 1.20964 0.75542 0.96341 0.99952 0.89015 1.57331 1.14324 1.77567 1.33405 1.22101 0.91768 0.99934 0.91289 1.22674 0.96113 0.97498 0.99947 1.30867 1.19406 1.10493 1.12294 1.06595 0.77697 0.75153 0.74262 1.93620 1.81346 1.72273 1.47259 1.93662 1.85222 1.28979 1.86004 1.21823 0.80960 1.02232 0.97247 0.92735 0.96242 0.95821 0.89573 0.89546 0.91435 0.88498 0.90858 0.90048 0.90782 0.91253 0.90466 0.88694 0.88732 0.87207 0.84214 0.83998 0.88349 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.93 27.47 -169.99 -4.67 18.26 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.26 -6.81 6.54 56.52 0.37 -6.44 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 7 C -0.52 -15.05 9.66 -34.44 -0.33 -15.39 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.00 0.01 3.33 -27.88 -0.09 -0.08 16 10 C -0.12 -2.33 3.98 -27.88 -0.11 -2.45 16 11 C 0.51 9.63 7.70 -10.99 -0.08 9.55 16 12 O -0.54 -12.29 15.40 5.55 0.09 -12.21 16 13 N -0.62 -8.70 2.97 -172.47 -0.51 -9.21 16 14 C 0.10 1.06 6.37 -3.48 -0.02 1.04 16 15 C -0.14 -1.14 6.10 -26.39 -0.16 -1.30 16 16 C -0.13 -1.03 5.23 -26.69 -0.14 -1.17 16 17 C 0.18 1.87 3.11 -67.79 -0.21 1.66 16 18 H 0.09 1.14 8.10 -51.92 -0.42 0.72 16 19 N -0.99 -8.39 3.11 -105.98 -0.33 -8.72 16 20 C 0.08 0.34 6.18 -3.05 -0.02 0.32 16 21 C -0.12 -0.33 6.81 -24.66 -0.17 -0.50 16 22 C -0.60 -2.40 7.51 38.54 0.29 -2.11 16 23 S 2.57 24.25 6.15 -107.50 -0.66 23.59 16 24 O -0.96 -12.03 18.14 -57.41 -1.04 -13.07 16 25 O -0.95 -13.31 18.14 -57.41 -1.04 -14.35 16 26 C 0.10 1.27 5.86 -3.69 -0.02 1.24 16 27 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 28 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 29 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 30 H 0.09 1.53 7.93 -51.93 -0.41 1.12 16 31 H 0.09 1.55 7.70 -51.93 -0.40 1.15 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 1.00 5.93 -51.93 -0.31 0.70 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.44 7.28 -51.93 -0.38 0.06 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.32 7.16 -51.93 -0.37 -0.06 16 40 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.11 0.08 8.14 -51.93 -0.42 -0.35 16 42 H 0.14 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 1.52 7.00 -51.93 -0.36 1.16 16 45 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -40.23 366.60 -10.26 -50.49 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -7.22 Total: -5.69 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -1.17 Total: -7.21 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.07 Total: -45.33 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -2.00 Total: -39.63 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.67 Total: 18.26 kcal Atomic # 16 Polarization: 24.25 SS G_CDS: -0.66 Total: 23.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -40.23 -10.26 -50.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408233979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.600 kcal (2) G-P(sol) polarization free energy of solvation -40.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds