Wall clock time and date at job start Tue Mar 31 2020 05:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99670 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99659 * 3 2 1 5 5 H 1.48496 * 109.47530 * 30.00096 * 3 2 1 6 6 H 1.48501 * 109.47312 * 150.00340 * 3 2 1 7 7 C 1.38945 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 0.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 179.72366 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46942 * 179.97438 * 12 10 9 14 14 C 1.48576 * 111.00235 * 52.58654 * 13 12 10 15 15 C 1.55026 * 103.28250 * 159.46660 * 14 13 12 16 16 C 1.54175 * 102.82301 * 322.93817 * 15 14 13 17 17 C 1.48018 * 110.99889 * 169.99711 * 13 12 10 18 18 C 1.52720 * 109.86353 * 140.52480 * 16 15 14 19 19 C 1.51308 * 108.70718 * 174.68141 * 18 16 15 20 20 O 1.21295 * 120.81018 * 153.18025 * 19 18 16 21 21 C 1.46974 * 118.38001 * 333.20537 * 19 18 16 22 22 C 1.39754 * 120.71895 * 180.78177 * 21 19 18 23 23 C 1.37804 * 119.64848 * 180.02562 * 22 21 19 24 24 C 1.38621 * 120.34433 * 0.02562 * 23 22 21 25 25 C 1.38109 * 120.58545 * 359.97438 * 24 23 22 26 26 C 1.38593 * 119.95967 * 359.97438 * 25 24 23 27 27 O 1.35612 * 120.55258 * 180.08155 * 26 25 24 28 28 H 0.97004 * 120.00486 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 30 30 H 1.08994 * 109.46850 * 299.99690 * 12 10 9 31 31 H 1.08998 * 109.47115 * 59.99614 * 12 10 9 32 32 H 1.09004 * 110.65763 * 277.92062 * 14 13 12 33 33 H 1.09005 * 110.65701 * 41.01726 * 14 13 12 34 34 H 1.08999 * 110.74635 * 204.60016 * 15 14 13 35 35 H 1.09005 * 110.89315 * 81.34045 * 15 14 13 36 36 H 1.09001 * 109.97590 * 333.60761 * 17 13 12 37 37 H 1.09007 * 109.97390 * 94.84369 * 17 13 12 38 38 H 1.08999 * 109.59913 * 294.44703 * 18 16 15 39 39 H 1.08995 * 109.60096 * 54.76312 * 18 16 15 40 40 H 1.08000 * 120.17870 * 0.05301 * 22 21 19 41 41 H 1.07993 * 119.82162 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.70601 * 180.02562 * 24 23 22 43 43 H 1.07996 * 120.02373 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 -0.0052 10 6 4.0538 -2.3704 -0.0103 11 8 3.4473 -3.4208 -0.0104 12 6 5.5608 -2.3704 -0.0161 13 7 6.0504 -3.7553 -0.0204 14 6 5.4292 -4.5363 -1.1211 15 6 6.4067 -5.7246 -1.3104 16 6 7.7852 -5.0737 -1.0804 17 6 7.5093 -3.8014 -0.2660 18 6 8.6817 -6.0231 -0.2883 19 6 10.0646 -5.4169 -0.1912 20 8 10.7979 -5.6877 0.7363 21 6 10.4974 -4.4914 -1.2477 22 6 11.7707 -3.9161 -1.2152 23 6 12.1535 -3.0508 -2.2171 24 6 11.2829 -2.7498 -3.2530 25 6 10.0220 -3.3115 -3.2969 26 6 9.6183 -4.1849 -2.2995 27 8 8.3835 -4.7447 -2.3316 28 1 -0.4851 0.8400 -0.0004 29 1 3.8648 -0.3632 -0.0056 30 1 5.9206 -1.8546 -0.9063 31 1 5.9274 -1.8585 0.8736 32 1 4.4415 -4.8934 -0.8294 33 1 5.3699 -3.9386 -2.0308 34 1 6.3336 -6.1276 -2.3205 35 1 6.2194 -6.5036 -0.5712 36 1 7.8196 -2.9227 -0.8316 37 1 8.0455 -3.8420 0.6822 38 1 8.2726 -6.1627 0.7123 39 1 8.7366 -6.9848 -0.7982 40 1 12.4512 -4.1487 -0.4095 41 1 13.1368 -2.6050 -2.1950 42 1 11.5938 -2.0706 -4.0331 43 1 9.3512 -3.0709 -4.1084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411987839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:56 Heat of formation + Delta-G solvation = -55.731292 kcal Electronic energy + Delta-G solvation = -28217.366373 eV Core-core repulsion = 24228.544817 eV Total energy + Delta-G solvation = -3988.821556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.71641 -39.40877 -38.73626 -38.24160 -36.69041 -34.07471 -33.00540 -31.82179 -31.59486 -30.73853 -29.78147 -28.01141 -26.06830 -24.27228 -24.12126 -22.78067 -21.56218 -21.34054 -19.49366 -19.34646 -18.56117 -18.15571 -16.92864 -16.47605 -16.15477 -15.75728 -15.46108 -15.35286 -15.00679 -14.91149 -14.77335 -14.46638 -14.27409 -14.18693 -13.62380 -13.36767 -13.30224 -12.93346 -12.71076 -12.51832 -12.30755 -12.20855 -12.01913 -11.92746 -11.71624 -11.31295 -11.27188 -11.16294 -10.99612 -10.78301 -10.61600 -10.01796 -9.97266 -9.59698 -9.45964 -8.72376 -8.59438 -8.26004 -8.12732 -6.35591 -3.87274 0.24541 0.96364 2.01981 2.74989 2.99829 3.03660 3.12403 3.40975 3.56517 3.66038 3.88610 4.06515 4.15073 4.22731 4.31810 4.37194 4.59129 4.69465 4.82304 4.85329 4.90563 5.03947 5.10891 5.16641 5.23255 5.36418 5.39771 5.51081 5.54093 5.56202 5.65018 5.69844 5.75896 5.83316 5.85356 5.92066 6.04425 6.09063 6.29337 6.48120 6.93563 6.99611 7.07312 7.11539 7.52694 8.09387 8.54197 8.89916 9.36996 9.76140 10.77268 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.017238 B = 0.002953 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.893564 B = 9481.137999 C =10291.589811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.043 3.957 3 Si 0.878 3.122 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.121 0.879 9 N -0.587 5.587 10 C 0.451 3.549 11 O -0.562 6.562 12 C 0.032 3.968 13 N -0.488 5.488 14 C 0.036 3.964 15 C -0.111 4.111 16 C 0.113 3.887 17 C 0.012 3.988 18 C -0.183 4.183 19 C 0.404 3.596 20 O -0.451 6.451 21 C -0.246 4.246 22 C -0.028 4.028 23 C -0.167 4.167 24 C -0.052 4.052 25 C -0.161 4.161 26 C 0.177 3.823 27 O -0.297 6.297 28 H 0.274 0.726 29 H 0.371 0.629 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.814 -6.022 -6.331 25.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.138 0.862 9 N -0.226 5.226 10 C 0.237 3.763 11 O -0.445 6.445 12 C -0.099 4.099 13 N -0.212 5.212 14 C -0.091 4.091 15 C -0.149 4.149 16 C 0.075 3.925 17 C -0.117 4.117 18 C -0.220 4.220 19 C 0.282 3.718 20 O -0.326 6.326 21 C -0.248 4.248 22 C -0.046 4.046 23 C -0.185 4.185 24 C -0.070 4.070 25 C -0.180 4.180 26 C 0.131 3.869 27 O -0.211 6.211 28 H 0.085 0.915 29 H 0.203 0.797 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.145 0.855 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.154 0.846 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 23.289 -7.009 -5.480 24.930 hybrid contribution 0.930 1.992 -0.678 2.301 sum 24.218 -5.017 -6.158 25.487 Atomic orbital electron populations 1.69615 1.05649 1.27584 1.49056 1.25036 0.95489 0.97996 0.97531 0.86689 0.79856 0.84073 0.78906 1.19615 1.20080 1.19454 1.19430 0.79104 0.96674 1.48208 0.86162 1.42190 1.07600 1.06093 1.66680 1.19523 0.87926 0.84618 0.84215 1.90474 1.69404 1.30491 1.54127 1.22163 0.95652 0.90265 1.01850 1.64735 1.01282 1.11128 1.44086 1.23602 1.00416 0.92958 0.92079 1.22699 0.89538 0.98985 1.03647 1.22484 0.93793 0.94613 0.81653 1.23573 0.92098 0.96176 0.99803 1.22814 0.93832 1.00876 1.04498 1.22251 0.88282 0.78304 0.82959 1.90546 1.55834 1.54494 1.31725 1.20579 0.97137 1.06689 1.00360 1.21235 0.93773 0.92359 0.97227 1.21105 1.00808 1.01015 0.95543 1.21266 0.92169 0.96425 0.97176 1.20690 0.98197 0.98261 1.00832 1.19202 0.84085 0.90079 0.93531 1.86062 1.28033 1.75259 1.31698 0.91541 0.79660 0.93047 0.88962 0.85534 0.93788 0.89272 0.88355 0.92545 0.89513 0.86110 0.86708 0.84648 0.85139 0.84782 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.34 13.96 55.50 0.77 -24.57 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 3 Si 0.88 19.09 27.73 -169.99 -4.71 14.38 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 7 C -0.31 -8.46 10.16 -14.93 -0.15 -8.62 16 8 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 9 N -0.59 -13.69 5.09 -10.96 -0.06 -13.75 16 10 C 0.45 9.94 7.49 -10.98 -0.08 9.86 16 11 O -0.56 -14.19 13.10 5.55 0.07 -14.12 16 12 C 0.03 0.54 5.52 -4.98 -0.03 0.51 16 13 N -0.49 -7.63 5.27 -231.97 -1.22 -8.85 16 14 C 0.04 0.56 5.30 -1.83 -0.01 0.55 16 15 C -0.11 -1.26 6.33 -25.05 -0.16 -1.42 16 16 C 0.11 1.27 0.96 -89.86 -0.09 1.18 16 17 C 0.01 0.15 5.35 -2.91 -0.02 0.14 16 18 C -0.18 -1.82 4.79 -27.73 -0.13 -1.95 16 19 C 0.40 4.71 6.49 -30.47 -0.20 4.51 16 20 O -0.45 -6.27 17.24 5.54 0.10 -6.18 16 21 C -0.25 -2.70 5.65 -104.95 -0.59 -3.29 16 22 C -0.03 -0.26 9.63 -39.17 -0.38 -0.64 16 23 C -0.17 -1.26 10.02 -39.60 -0.40 -1.66 16 24 C -0.05 -0.38 10.02 -39.49 -0.40 -0.78 16 25 C -0.16 -1.46 9.99 -39.50 -0.39 -1.86 16 26 C 0.18 1.93 5.67 -38.61 -0.22 1.71 16 27 O -0.30 -3.45 9.72 -18.53 -0.18 -3.63 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.37 7.63 5.77 -40.82 -0.24 7.40 16 30 H 0.05 0.77 7.82 -51.93 -0.41 0.36 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.13 2.33 5.98 -51.93 -0.31 2.02 16 33 H 0.04 0.70 8.02 -51.93 -0.42 0.29 16 34 H 0.09 0.91 8.06 -51.93 -0.42 0.49 16 35 H 0.10 1.00 7.83 -51.93 -0.41 0.59 16 36 H 0.06 0.72 6.94 -51.93 -0.36 0.36 16 37 H 0.09 1.07 7.40 -51.93 -0.38 0.68 16 38 H 0.12 1.15 8.12 -51.93 -0.42 0.73 16 39 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.14 1.20 7.73 -52.49 -0.41 0.79 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 43 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -32.69 351.54 -8.70 -41.39 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -5.43 Total: 10.72 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -3.33 Total: -0.70 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.50 Total: -47.16 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.01 Total: -23.92 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.38 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.69 -8.70 -41.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411987839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.337 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds