Wall clock time and date at job start Tue Mar 31 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 120.00210 * 2 1 4 4 H 1.48503 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46864 * 300.00137 * 3 2 1 6 6 H 1.48501 * 109.47136 * 60.00201 * 3 2 1 7 7 C 1.38955 * 119.99618 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99896 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00088 * 0.02562 * 7 2 1 10 10 C 1.34769 * 119.99964 * 180.02562 * 9 7 2 11 11 O 1.21303 * 120.00076 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00368 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47354 * 179.97438 * 12 10 9 14 14 C 1.47955 * 111.00308 * 69.87141 * 13 12 10 15 15 C 1.54127 * 107.03741 * 145.72555 * 14 13 12 16 16 C 1.53974 * 104.98989 * 358.33680 * 15 14 13 17 17 C 1.48658 * 110.99767 * 187.39315 * 13 12 10 18 18 C 1.52461 * 110.32166 * 220.71562 * 16 15 14 19 19 C 1.51322 * 108.78734 * 184.54395 * 18 16 15 20 20 O 1.21298 * 120.81107 * 206.61584 * 19 18 16 21 21 C 1.46965 * 118.38461 * 26.58630 * 19 18 16 22 22 C 1.39770 * 120.67572 * 178.96237 * 21 19 18 23 23 C 1.37783 * 119.67311 * 179.89204 * 22 21 19 24 24 C 1.38623 * 120.33390 * 359.94999 * 23 22 21 25 25 C 1.38116 * 120.58111 * 359.97438 * 24 23 22 26 26 C 1.38589 * 119.96834 * 0.31318 * 25 24 23 27 27 O 1.35647 * 120.51068 * 180.08224 * 26 25 24 28 28 H 0.96998 * 119.99752 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00137 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47116 * 59.98947 * 12 10 9 31 31 H 1.09009 * 109.46639 * 299.99417 * 12 10 9 32 32 H 1.08997 * 109.92003 * 26.38119 * 14 13 12 33 33 H 1.08997 * 110.08795 * 265.16176 * 14 13 12 34 34 H 1.08998 * 110.33563 * 239.46053 * 15 14 13 35 35 H 1.09001 * 110.33537 * 117.21674 * 15 14 13 36 36 H 1.08994 * 110.67035 * 82.52431 * 17 13 12 37 37 H 1.08996 * 110.66624 * 319.38591 * 17 13 12 38 38 H 1.09000 * 109.59183 * 64.74840 * 18 16 15 39 39 H 1.08999 * 109.69765 * 304.39761 * 18 16 15 40 40 H 1.08002 * 120.16108 * 359.87396 * 22 21 19 41 41 H 1.08002 * 119.83740 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.71389 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.01222 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2101 -3.5580 -0.0011 12 6 1.2436 -4.8630 -0.0022 13 7 2.1981 -5.9796 -0.0027 14 6 2.9040 -6.0743 1.2942 15 6 3.1518 -7.5712 1.5651 16 6 2.5092 -8.3035 0.3727 17 6 1.4982 -7.2787 -0.1818 18 6 1.7828 -9.5562 0.8497 19 6 1.2621 -10.3067 -0.3567 20 8 0.2892 -11.0257 -0.2687 21 6 1.9635 -10.1428 -1.6377 22 6 1.5367 -10.8301 -2.7774 23 6 2.2082 -10.6594 -3.9684 24 6 3.3015 -9.8102 -4.0402 25 6 3.7327 -9.1238 -2.9219 26 6 3.0745 -9.2865 -1.7132 27 8 3.4876 -8.6166 -0.6084 28 1 -0.4850 0.8400 0.0004 29 1 0.3533 -2.3907 -0.0016 30 1 0.6172 -4.9205 -0.8923 31 1 0.6167 -4.9209 0.8877 32 1 2.2854 -5.6511 2.0855 33 1 3.8549 -5.5440 1.2425 34 1 2.6728 -7.8719 2.4969 35 1 4.2215 -7.7771 1.6044 36 1 1.2996 -7.4664 -1.2370 37 1 0.5733 -7.3001 0.3946 38 1 0.9488 -9.2729 1.4918 39 1 2.4724 -10.1915 1.4056 40 1 0.6849 -11.4920 -2.7247 41 1 1.8809 -11.1895 -4.8506 42 1 3.8202 -9.6835 -4.9789 43 1 4.5853 -8.4642 -2.9883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411987840.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:00 Heat of formation + Delta-G solvation = -64.452580 kcal Electronic energy + Delta-G solvation = -28119.373097 eV Core-core repulsion = 24130.173357 eV Total energy + Delta-G solvation = -3989.199740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.62142 -39.27102 -38.63034 -38.02867 -36.61258 -33.94332 -32.99962 -31.62204 -31.19137 -30.62701 -29.73918 -27.95930 -25.97635 -24.29885 -24.12473 -22.76298 -21.59034 -21.14333 -19.48756 -19.06134 -18.27262 -17.85822 -16.97631 -16.46352 -16.01643 -15.76384 -15.41604 -15.22477 -14.95627 -14.67954 -14.47176 -14.38082 -14.18595 -14.03290 -13.80125 -13.51557 -13.11296 -12.84228 -12.71564 -12.38096 -12.12422 -12.03341 -11.90950 -11.68940 -11.52525 -11.48651 -11.13723 -11.05109 -10.81281 -10.71483 -10.34389 -10.22418 -9.95320 -9.50593 -9.32800 -8.56529 -8.51523 -8.02209 -7.94786 -6.41780 -3.82477 0.34648 1.11146 2.08278 2.86664 3.16129 3.26705 3.33825 3.54125 3.59180 3.80855 3.90977 4.15194 4.22451 4.32520 4.38046 4.48866 4.66971 4.83074 4.92482 4.97429 5.03416 5.12171 5.14212 5.18334 5.23425 5.34401 5.40897 5.50131 5.58313 5.65325 5.68841 5.73237 5.84525 5.91428 5.99528 6.03845 6.17718 6.25872 6.37810 6.42745 7.01674 7.11097 7.13394 7.22563 7.55429 8.06255 8.61765 9.18361 9.54425 10.06246 10.76159 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019084 B = 0.002704 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.822782 B =10353.673259 C =10787.761404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.566 5.566 10 C 0.446 3.554 11 O -0.575 6.575 12 C 0.035 3.965 13 N -0.482 5.482 14 C 0.045 3.955 15 C -0.117 4.117 16 C 0.123 3.877 17 C 0.009 3.991 18 C -0.187 4.187 19 C 0.406 3.594 20 O -0.454 6.454 21 C -0.252 4.252 22 C -0.029 4.029 23 C -0.169 4.169 24 C -0.051 4.051 25 C -0.155 4.155 26 C 0.185 3.815 27 O -0.281 6.281 28 H 0.271 0.729 29 H 0.391 0.609 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.241 -21.440 -2.001 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.231 3.769 11 O -0.459 6.459 12 C -0.096 4.096 13 N -0.206 5.206 14 C -0.083 4.083 15 C -0.154 4.154 16 C 0.084 3.916 17 C -0.119 4.119 18 C -0.225 4.225 19 C 0.284 3.716 20 O -0.329 6.329 21 C -0.254 4.254 22 C -0.047 4.047 23 C -0.187 4.187 24 C -0.069 4.069 25 C -0.174 4.174 26 C 0.138 3.862 27 O -0.194 6.194 28 H 0.080 0.920 29 H 0.225 0.775 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.977 -21.443 -2.304 21.771 hybrid contribution -1.084 0.776 0.599 1.462 sum 1.893 -20.666 -1.705 20.823 Atomic orbital electron populations 1.69622 1.05941 1.28023 1.50817 1.25260 0.95629 0.99706 0.97406 0.85807 0.79725 0.81170 0.77691 1.19202 1.20759 1.20795 1.19745 0.93373 0.82166 1.47386 0.87856 1.41859 1.09161 1.04573 1.64669 1.19649 0.88394 0.84399 0.84501 1.90519 1.13563 1.86943 1.54867 1.22116 0.94115 0.91711 1.01705 1.64511 1.24023 1.00035 1.31993 1.22936 1.01553 0.94085 0.89713 1.22532 1.03042 0.95130 0.94745 1.22122 0.88299 0.92531 0.88618 1.23853 0.95443 0.90459 1.02167 1.22755 1.03220 0.97849 0.98629 1.22186 0.82076 0.78569 0.88738 1.90542 1.23262 1.32688 1.86433 1.20517 1.02087 1.05806 0.96998 1.21185 0.97455 0.95105 0.90942 1.21079 0.97676 1.01847 0.98080 1.21280 0.94774 0.92921 0.97926 1.20717 1.03654 1.03385 0.89626 1.19203 0.91545 0.88429 0.86983 1.85941 1.35508 1.70566 1.27360 0.91951 0.77544 0.89312 0.93097 0.93579 0.88171 0.89297 0.88906 0.89486 0.92246 0.86733 0.86582 0.84817 0.85241 0.84790 0.84091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 2 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 3 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.57 -14.27 5.29 -10.96 -0.06 -14.32 16 10 C 0.45 10.44 7.58 -10.99 -0.08 10.36 16 11 O -0.58 -15.39 14.66 5.54 0.08 -15.30 16 12 C 0.04 0.62 5.25 -4.98 -0.03 0.60 16 13 N -0.48 -7.95 4.96 -232.09 -1.15 -9.11 16 14 C 0.04 0.67 5.76 -2.65 -0.02 0.66 16 15 C -0.12 -1.26 6.26 -25.63 -0.16 -1.42 16 16 C 0.12 1.41 0.92 -89.72 -0.08 1.32 16 17 C 0.01 0.12 5.12 -2.18 -0.01 0.11 16 18 C -0.19 -1.77 4.98 -27.85 -0.14 -1.91 16 19 C 0.41 4.77 6.75 -30.47 -0.21 4.57 16 20 O -0.45 -6.31 17.24 5.54 0.10 -6.21 16 21 C -0.25 -2.94 5.49 -104.95 -0.58 -3.52 16 22 C -0.03 -0.29 9.63 -39.18 -0.38 -0.67 16 23 C -0.17 -1.45 10.02 -39.61 -0.40 -1.85 16 24 C -0.05 -0.44 10.02 -39.48 -0.40 -0.84 16 25 C -0.16 -1.66 9.99 -39.50 -0.39 -2.06 16 26 C 0.18 2.23 5.63 -38.61 -0.22 2.01 16 27 O -0.28 -3.62 9.76 -18.64 -0.18 -3.80 16 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 30 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 31 H 0.05 0.81 7.82 -51.92 -0.41 0.40 16 32 H 0.05 0.67 7.57 -51.93 -0.39 0.28 16 33 H 0.10 1.77 7.40 -51.93 -0.38 1.39 16 34 H 0.09 0.72 7.81 -51.93 -0.41 0.32 16 35 H 0.09 0.96 8.07 -51.93 -0.42 0.55 16 36 H 0.09 1.20 7.14 -51.93 -0.37 0.83 16 37 H 0.06 0.69 7.76 -51.93 -0.40 0.29 16 38 H 0.11 0.94 7.96 -51.93 -0.41 0.53 16 39 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.13 1.27 7.72 -52.49 -0.41 0.86 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -33.07 357.45 -8.99 -42.06 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.55 Total: 9.69 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -3.32 Total: -0.55 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.48 Total: -47.22 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.01 Total: -25.32 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.07 -8.99 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411987840.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.394 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds