Wall clock time and date at job start Tue Mar 31 2020 05:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 120.00210 * 2 1 4 4 H 1.48503 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46864 * 300.00137 * 3 2 1 6 6 H 1.48501 * 109.47136 * 60.00201 * 3 2 1 7 7 C 1.38955 * 119.99618 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99896 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00088 * 0.02562 * 7 2 1 10 10 C 1.34769 * 119.99964 * 180.02562 * 9 7 2 11 11 O 1.21303 * 120.00076 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00368 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47354 * 179.97438 * 12 10 9 14 14 C 1.47955 * 111.00308 * 69.87141 * 13 12 10 15 15 C 1.54127 * 107.03741 * 145.72555 * 14 13 12 16 16 C 1.53974 * 104.98989 * 358.33680 * 15 14 13 17 17 C 1.48658 * 110.99767 * 187.39315 * 13 12 10 18 18 C 1.52461 * 110.32166 * 220.71562 * 16 15 14 19 19 C 1.51322 * 108.78734 * 184.54395 * 18 16 15 20 20 O 1.21298 * 120.81107 * 206.61584 * 19 18 16 21 21 C 1.46965 * 118.38461 * 26.58630 * 19 18 16 22 22 C 1.39770 * 120.67572 * 178.96237 * 21 19 18 23 23 C 1.37783 * 119.67311 * 179.89204 * 22 21 19 24 24 C 1.38623 * 120.33390 * 359.94999 * 23 22 21 25 25 C 1.38116 * 120.58111 * 359.97438 * 24 23 22 26 26 C 1.38589 * 119.96834 * 0.31318 * 25 24 23 27 27 O 1.35647 * 120.51068 * 180.08224 * 26 25 24 28 28 H 0.96998 * 119.99752 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00137 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47116 * 59.98947 * 12 10 9 31 31 H 1.09009 * 109.46639 * 299.99417 * 12 10 9 32 32 H 1.08997 * 109.92003 * 26.38119 * 14 13 12 33 33 H 1.08997 * 110.08795 * 265.16176 * 14 13 12 34 34 H 1.08998 * 110.33563 * 239.46053 * 15 14 13 35 35 H 1.09001 * 110.33537 * 117.21674 * 15 14 13 36 36 H 1.08994 * 110.67035 * 82.52431 * 17 13 12 37 37 H 1.08996 * 110.66624 * 319.38591 * 17 13 12 38 38 H 1.09000 * 109.59183 * 64.74840 * 18 16 15 39 39 H 1.08999 * 109.69765 * 304.39761 * 18 16 15 40 40 H 1.08002 * 120.16108 * 359.87396 * 22 21 19 41 41 H 1.08002 * 119.83740 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.71389 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.01222 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2101 -3.5580 -0.0011 12 6 1.2436 -4.8630 -0.0022 13 7 2.1981 -5.9796 -0.0027 14 6 2.9040 -6.0743 1.2942 15 6 3.1518 -7.5712 1.5651 16 6 2.5092 -8.3035 0.3727 17 6 1.4982 -7.2787 -0.1818 18 6 1.7828 -9.5562 0.8497 19 6 1.2621 -10.3067 -0.3567 20 8 0.2892 -11.0257 -0.2687 21 6 1.9635 -10.1428 -1.6377 22 6 1.5367 -10.8301 -2.7774 23 6 2.2082 -10.6594 -3.9684 24 6 3.3015 -9.8102 -4.0402 25 6 3.7327 -9.1238 -2.9219 26 6 3.0745 -9.2865 -1.7132 27 8 3.4876 -8.6166 -0.6084 28 1 -0.4850 0.8400 0.0004 29 1 0.3533 -2.3907 -0.0016 30 1 0.6172 -4.9205 -0.8923 31 1 0.6167 -4.9209 0.8877 32 1 2.2854 -5.6511 2.0855 33 1 3.8549 -5.5440 1.2425 34 1 2.6728 -7.8719 2.4969 35 1 4.2215 -7.7771 1.6044 36 1 1.2996 -7.4664 -1.2370 37 1 0.5733 -7.3001 0.3946 38 1 0.9488 -9.2729 1.4918 39 1 2.4724 -10.1915 1.4056 40 1 0.6849 -11.4920 -2.7247 41 1 1.8809 -11.1895 -4.8506 42 1 3.8202 -9.6835 -4.9789 43 1 4.5853 -8.4642 -2.9883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411987840.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:59 Heat of formation + Delta-G solvation = -87.663460 kcal Electronic energy + Delta-G solvation = -28120.379596 eV Core-core repulsion = 24130.173357 eV Total energy + Delta-G solvation = -3990.206239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.50181 -40.51698 -39.73572 -39.28163 -37.73644 -35.92138 -34.06844 -33.25944 -32.44514 -31.43487 -30.69428 -29.22134 -27.38705 -25.90901 -24.94209 -23.65440 -22.60491 -22.23835 -20.96690 -20.18855 -19.83124 -19.15216 -17.89219 -17.78711 -17.25187 -16.83044 -16.56327 -16.42352 -16.15242 -15.93889 -15.70369 -15.57271 -15.39820 -15.14376 -14.96707 -14.72883 -14.28684 -14.18965 -13.67059 -13.52392 -13.40302 -13.20781 -13.02476 -12.91678 -12.78532 -12.70176 -12.51740 -12.39793 -12.12648 -12.04606 -11.87116 -11.59523 -11.48753 -10.82821 -10.33706 -10.10777 -10.00693 -9.37094 -9.34361 -8.46630 -5.95131 -0.46003 0.33185 1.26819 1.36404 1.41679 1.55857 2.04894 2.05380 2.27753 2.67698 2.75529 2.79580 3.19535 3.22414 3.37623 3.40908 3.55872 3.65721 3.90546 4.10974 4.15713 4.16932 4.20883 4.30331 4.32137 4.34435 4.41293 4.45998 4.52534 4.54418 4.62773 4.76696 4.86456 4.91094 4.93625 5.15827 5.17881 5.32358 5.41292 5.44141 5.70150 5.79659 5.88104 6.05207 6.27454 6.36114 6.60674 7.13345 7.56325 8.12308 8.71143 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019084 B = 0.002704 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.822782 B =10353.673259 C =10787.761404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.330 4.330 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.443 3.557 11 O -0.613 6.613 12 C 0.048 3.952 13 N -0.509 5.509 14 C 0.043 3.957 15 C -0.105 4.105 16 C 0.125 3.875 17 C 0.011 3.989 18 C -0.178 4.178 19 C 0.405 3.595 20 O -0.482 6.482 21 C -0.269 4.269 22 C -0.039 4.039 23 C -0.162 4.162 24 C -0.044 4.044 25 C -0.173 4.173 26 C 0.168 3.832 27 O -0.299 6.299 28 H 0.277 0.723 29 H 0.395 0.605 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.159 0.841 42 H 0.164 0.836 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 -22.557 -2.095 22.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.460 4.460 8 H 0.096 0.904 9 N -0.213 5.213 10 C 0.230 3.770 11 O -0.499 6.499 12 C -0.083 4.083 13 N -0.233 5.233 14 C -0.085 4.085 15 C -0.142 4.142 16 C 0.087 3.913 17 C -0.116 4.116 18 C -0.215 4.215 19 C 0.286 3.714 20 O -0.360 6.360 21 C -0.270 4.270 22 C -0.058 4.058 23 C -0.180 4.180 24 C -0.062 4.062 25 C -0.192 4.192 26 C 0.122 3.878 27 O -0.213 6.213 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.144 0.856 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.177 0.823 42 H 0.182 0.818 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.349 -22.576 -2.401 22.824 hybrid contribution -0.851 1.083 0.527 1.474 sum 1.498 -21.493 -1.874 21.626 Atomic orbital electron populations 1.69680 1.06828 1.29189 1.50569 1.26028 0.96531 1.02366 0.96361 0.84881 0.78053 0.77152 0.78316 1.19785 1.19686 1.19546 1.19684 0.92647 0.83953 1.49712 0.90354 1.41924 1.09264 1.04681 1.65409 1.20670 0.88276 0.85781 0.82246 1.90494 1.15604 1.87820 1.55986 1.21953 0.93810 0.89062 1.03512 1.64372 1.24671 1.01077 1.33179 1.22852 0.99584 0.96802 0.89221 1.22522 1.03787 0.91877 0.96050 1.22154 0.87846 0.92986 0.88357 1.23884 0.96571 0.89032 1.02135 1.22758 1.03998 0.96783 0.97966 1.22490 0.81410 0.78012 0.89482 1.90531 1.24426 1.34159 1.86866 1.20649 1.02311 1.06407 0.97679 1.21419 0.97869 0.95150 0.91325 1.21443 0.96917 1.01213 0.98455 1.21649 0.94504 0.91688 0.98345 1.20951 1.03951 1.04133 0.90141 1.19386 0.92252 0.89023 0.87186 1.85919 1.36342 1.70994 1.28024 0.91340 0.77089 0.87875 0.90606 0.93334 0.92015 0.85616 0.88593 0.90503 0.90170 0.84784 0.84289 0.84381 0.82314 0.81836 0.84273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.84 13.05 21.67 0.28 -49.56 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 3 Si 0.99 43.05 29.55 68.60 2.03 45.07 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.58 -29.67 5.29 -306.98 -1.62 -31.29 16 10 C 0.44 21.25 7.58 87.66 0.66 21.92 16 11 O -0.61 -34.13 14.66 -3.10 -0.05 -34.18 16 12 C 0.05 1.68 5.25 85.56 0.45 2.13 16 13 N -0.51 -16.64 4.96 -888.21 -4.41 -21.05 16 14 C 0.04 1.29 5.76 86.48 0.50 1.78 16 15 C -0.10 -2.08 6.26 31.30 0.20 -1.89 16 16 C 0.13 2.66 0.92 -10.21 -0.01 2.65 16 17 C 0.01 0.29 5.12 86.39 0.44 0.73 16 18 C -0.18 -2.92 4.98 29.87 0.15 -2.77 16 19 C 0.41 8.99 6.75 28.17 0.19 9.18 16 20 O -0.48 -12.88 17.24 -3.09 -0.05 -12.94 16 21 C -0.27 -6.03 5.49 -20.08 -0.11 -6.14 16 22 C -0.04 -0.76 9.63 22.53 0.22 -0.54 16 23 C -0.16 -2.43 10.02 22.25 0.22 -2.21 16 24 C -0.04 -0.68 10.02 22.33 0.22 -0.45 16 25 C -0.17 -3.62 9.99 22.32 0.22 -3.40 16 26 C 0.17 3.97 5.63 22.90 0.13 4.10 16 27 O -0.30 -7.57 9.76 -89.61 -0.87 -8.45 16 28 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 29 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 30 H 0.10 3.30 8.11 -2.39 -0.02 3.28 16 31 H 0.08 2.28 7.82 -2.38 -0.02 2.26 16 32 H 0.05 1.39 7.57 -2.39 -0.02 1.37 16 33 H 0.06 2.29 7.40 -2.39 -0.02 2.27 16 34 H 0.13 1.59 7.81 -2.39 -0.02 1.57 16 35 H 0.10 1.87 8.07 -2.39 -0.02 1.85 16 36 H 0.08 2.07 7.14 -2.39 -0.02 2.05 16 37 H 0.08 1.65 7.76 -2.39 -0.02 1.64 16 38 H 0.13 1.71 7.96 -2.39 -0.02 1.69 16 39 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.14 2.47 7.72 -2.91 -0.02 2.45 16 41 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 42 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 43 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -73.94 357.45 0.39 -73.55 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: 0.32 Total: 32.03 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 4.77 Total: 6.81 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -5.75 Total: -101.90 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -0.97 Total: -55.56 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -73.94 0.39 -73.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411987840.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.112 kcal (2) G-P(sol) polarization free energy of solvation -73.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds