Wall clock time and date at job start Tue Mar 31 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86794 * 119.99838 * 2 1 4 4 H 1.48508 * 109.46997 * 269.99597 * 3 2 1 5 5 H 1.48497 * 109.47349 * 29.99809 * 3 2 1 6 6 H 1.48502 * 109.46889 * 149.99895 * 3 2 1 7 7 C 1.39930 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00168 * 196.79063 * 7 2 1 9 9 C 1.41414 * 119.99970 * 16.78986 * 7 2 1 10 10 C 1.40777 * 120.20789 * 205.14478 * 9 7 2 11 11 C 1.37653 * 119.89874 * 180.02562 * 10 9 7 12 12 C 1.38515 * 120.32807 * 359.72111 * 11 10 9 13 13 C 1.39306 * 120.41910 * 0.55635 * 12 11 10 14 14 N 1.39746 * 119.95274 * 179.72241 * 13 12 11 15 15 C 1.34782 * 119.99595 * 325.52346 * 14 13 12 16 16 O 1.21371 * 120.00208 * 354.89522 * 15 14 13 17 17 C 1.49358 * 119.99613 * 174.61855 * 15 14 13 18 18 O 1.21362 * 120.00084 * 0.27551 * 17 15 14 19 19 N 1.34774 * 119.99950 * 180.27601 * 17 15 14 20 20 C 1.47069 * 136.05525 * 359.62633 * 19 17 15 21 21 C 1.53755 * 87.88538 * 152.96588 * 20 19 17 22 22 O 1.42907 * 114.39759 * 272.67833 * 21 20 19 23 23 C 1.53003 * 114.08837 * 139.78145 * 21 20 19 24 24 C 1.52996 * 117.50074 * 155.30761 * 23 21 20 25 25 C 1.53004 * 117.49979 * 86.64810 * 23 21 20 26 26 C 1.47068 * 136.05757 * 180.02562 * 19 17 15 27 27 C 1.38342 * 120.09615 * 359.44767 * 13 12 11 28 28 H 0.97002 * 120.00140 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.05051 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.83881 * 180.02562 * 11 10 9 31 31 H 1.07997 * 119.79174 * 180.29435 * 12 11 10 32 32 H 0.96999 * 120.00385 * 145.52298 * 14 13 12 33 33 H 1.08996 * 113.46747 * 267.69220 * 20 19 17 34 34 H 1.09004 * 113.46664 * 38.14096 * 20 19 17 35 35 H 0.96697 * 113.99606 * 43.24765 * 22 21 20 36 36 H 1.08994 * 115.54807 * 300.97462 * 23 21 20 37 37 H 1.09005 * 117.50029 * 0.02562 * 24 23 21 38 38 H 1.09002 * 117.50198 * 145.01549 * 24 23 21 39 39 H 1.08991 * 117.49505 * 214.98076 * 25 23 21 40 40 H 1.09004 * 117.49634 * 359.97438 * 25 23 21 41 41 H 1.08997 * 113.46463 * 321.86100 * 26 19 17 42 42 H 1.09000 * 113.46962 * 92.30210 * 26 19 17 43 43 H 1.08000 * 120.16656 * 180.25319 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4002 5 1 1.4397 2.6526 0.7000 6 1 3.5398 1.4401 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0534 -1.2317 0.2707 9 6 1.3461 -2.4106 -0.3527 10 6 1.8187 -3.6478 0.1246 11 6 1.1698 -4.8107 -0.2236 12 6 0.0497 -4.7699 -1.0374 13 6 -0.4262 -3.5537 -1.5220 14 7 -1.5537 -3.5244 -2.3471 15 6 -1.7778 -4.5285 -3.2177 16 8 -0.9550 -5.4106 -3.3517 17 6 -3.0416 -4.5591 -4.0131 18 8 -3.8644 -3.6771 -3.8791 19 7 -3.2683 -5.5661 -4.8797 20 6 -2.5454 -6.7700 -5.3166 21 6 -3.9093 -7.4032 -5.6377 22 8 -4.5240 -8.0719 -4.5345 23 6 -3.9296 -8.2197 -6.9315 24 6 -4.9827 -9.3228 -7.0542 25 6 -3.5110 -9.6889 -6.8463 26 6 -4.3443 -5.9410 -5.8096 27 6 0.2125 -2.3742 -1.1831 28 1 -0.4850 0.8401 -0.0004 29 1 2.6895 -3.6845 0.7625 30 1 1.5329 -5.7593 0.1435 31 1 -0.4555 -5.6873 -1.3014 32 1 -2.1750 -2.7814 -2.2932 33 1 -1.9242 -6.6076 -6.1974 34 1 -2.0112 -7.2722 -4.5100 35 1 -4.4682 -7.5867 -3.6999 36 1 -3.6657 -7.6729 -7.8366 37 1 -5.6614 -9.4665 -6.2134 38 1 -5.4114 -9.5019 -8.0402 39 1 -2.9721 -10.1087 -7.6956 40 1 -3.2208 -10.0736 -5.8686 41 1 -5.3427 -5.7368 -5.4230 42 1 -4.1969 -5.5602 -6.8202 43 1 -0.1579 -1.4303 -1.5548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412012648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:55 Heat of formation + Delta-G solvation = -17.969616 kcal Electronic energy + Delta-G solvation = -27364.693763 eV Core-core repulsion = 23377.509676 eV Total energy + Delta-G solvation = -3987.184087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.34502 -39.93565 -38.33082 -37.17813 -36.68660 -35.23867 -34.40232 -33.34257 -29.90184 -29.61398 -28.68308 -26.54816 -25.36595 -24.97985 -23.00695 -22.57759 -21.33743 -20.58509 -20.30362 -19.36144 -17.93164 -17.54038 -17.28579 -16.70270 -16.26855 -15.75739 -15.65675 -15.29366 -15.07781 -14.80928 -14.68591 -14.12425 -14.00120 -13.49821 -13.36709 -13.06479 -12.85695 -12.64983 -12.42447 -12.11584 -11.92227 -11.73889 -11.70753 -11.50321 -11.26435 -11.17827 -11.04910 -10.80258 -10.68376 -10.55446 -10.05145 -9.89604 -9.82347 -9.51618 -9.23310 -9.15475 -9.01154 -7.46824 -7.13620 -6.76591 -4.43290 1.44425 2.16495 2.69572 2.84652 3.05333 3.08470 3.17379 3.23101 3.47386 3.51288 3.62165 3.89929 4.08897 4.19922 4.38604 4.55923 4.62585 4.70797 4.79141 4.98173 5.03587 5.22076 5.23584 5.39624 5.45911 5.52812 5.58872 5.67790 5.83128 5.92182 6.16895 6.49422 6.54306 6.72422 6.90442 6.98816 7.09754 7.17205 7.26408 7.38384 7.47863 7.68145 7.82998 7.94886 8.02689 8.19913 8.34813 8.58106 8.82181 8.86507 10.13927 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.024837 B = 0.002438 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.090295 B =11481.655270 C =12158.464627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.461 4.461 8 H 0.080 0.920 9 C 0.120 3.880 10 C -0.224 4.224 11 C -0.084 4.084 12 C -0.227 4.227 13 C 0.138 3.862 14 N -0.628 5.628 15 C 0.501 3.499 16 O -0.503 6.503 17 C 0.539 3.461 18 O -0.517 6.517 19 N -0.629 5.629 20 C 0.080 3.920 21 C 0.132 3.868 22 O -0.529 6.529 23 C -0.139 4.139 24 C -0.165 4.165 25 C -0.166 4.166 26 C 0.078 3.922 27 C -0.175 4.175 28 H 0.281 0.719 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.414 0.586 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.387 0.613 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.046 -12.337 -12.908 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.491 4.491 8 H 0.098 0.902 9 C 0.117 3.883 10 C -0.244 4.244 11 C -0.103 4.103 12 C -0.248 4.248 13 C 0.047 3.953 14 N -0.273 5.273 15 C 0.282 3.718 16 O -0.378 6.378 17 C 0.323 3.677 18 O -0.392 6.392 19 N -0.366 5.366 20 C -0.043 4.043 21 C 0.089 3.911 22 O -0.335 6.335 23 C -0.158 4.158 24 C -0.202 4.202 25 C -0.203 4.203 26 C -0.044 4.044 27 C -0.197 4.197 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.251 0.749 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.235 0.765 36 H 0.141 0.859 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.222 -12.572 -13.185 20.419 hybrid contribution 0.177 1.836 0.446 1.897 sum -9.045 -10.736 -12.739 18.957 Atomic orbital electron populations 1.69801 1.07554 1.29269 1.35553 1.25908 0.94774 1.01354 0.92175 0.86289 0.80481 0.80514 0.79316 1.19306 1.20312 1.18585 1.19557 0.97853 0.90899 1.40793 0.90182 1.17372 0.90488 0.92304 0.88171 1.21071 1.03799 0.92818 1.06670 1.20409 0.95470 0.96723 0.97720 1.20249 1.02109 0.95244 1.07153 1.17611 0.88213 0.95460 0.94030 1.43195 1.25475 1.23131 1.35512 1.19779 0.86646 0.83943 0.81454 1.90751 1.45311 1.36732 1.65014 1.20001 0.87436 0.80068 0.80149 1.90777 1.46755 1.35473 1.66144 1.49286 1.23637 1.24797 1.38843 1.23982 0.96301 0.82518 1.01475 1.21777 0.92285 0.89569 0.87477 1.86414 1.78925 1.48730 1.19404 1.21923 1.07382 0.91090 0.95393 1.22917 0.92507 1.01552 1.03195 1.22944 0.97887 0.95822 1.03659 1.23910 0.93160 0.93017 0.94359 1.21118 0.99715 0.95295 1.03547 0.90827 0.88652 0.88820 0.88152 0.74928 0.88241 0.88159 0.76453 0.85860 0.87830 0.88812 0.88574 0.88134 0.89334 0.88346 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.06 10.94 55.55 0.61 -19.45 16 2 C 0.08 1.85 5.16 -17.34 -0.09 1.77 16 3 Si 0.91 18.43 29.59 -169.99 -5.03 13.40 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -11.99 9.06 -37.74 -0.34 -12.34 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 9 C 0.12 3.14 5.57 -106.85 -0.59 2.55 16 10 C -0.22 -5.44 9.79 -38.84 -0.38 -5.82 16 11 C -0.08 -1.92 10.01 -39.69 -0.40 -2.32 16 12 C -0.23 -5.24 8.66 -39.08 -0.34 -5.58 16 13 C 0.14 3.23 6.24 -83.82 -0.52 2.71 16 14 N -0.63 -12.61 5.32 -10.34 -0.05 -12.66 16 15 C 0.50 9.30 7.61 -11.63 -0.09 9.21 16 16 O -0.50 -10.02 12.93 5.48 0.07 -9.95 16 17 C 0.54 8.68 8.14 -11.63 -0.09 8.59 16 18 O -0.52 -9.30 17.26 5.49 0.09 -9.21 16 19 N -0.63 -7.83 3.51 -185.55 -0.65 -8.48 16 20 C 0.08 0.82 6.99 -8.36 -0.06 0.76 16 21 C 0.13 1.11 1.83 -89.96 -0.16 0.95 16 22 O -0.53 -4.93 12.38 -35.23 -0.44 -5.37 16 23 C -0.14 -0.94 5.47 -90.62 -0.50 -1.44 16 24 C -0.16 -1.10 9.97 -26.70 -0.27 -1.37 16 25 C -0.17 -1.13 10.09 -26.69 -0.27 -1.39 16 26 C 0.08 0.72 8.01 -8.49 -0.07 0.65 16 27 C -0.18 -4.46 8.60 -38.67 -0.33 -4.79 16 28 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 29 H 0.10 2.16 8.06 -52.48 -0.42 1.73 16 30 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.10 2.24 6.48 -52.49 -0.34 1.90 16 32 H 0.41 7.77 8.30 -40.82 -0.34 7.43 16 33 H 0.10 0.89 8.10 -51.93 -0.42 0.47 16 34 H 0.10 1.17 7.37 -51.93 -0.38 0.79 16 35 H 0.39 3.23 8.83 45.56 0.40 3.63 16 36 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.82 7.51 -51.93 -0.39 0.43 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 0.73 8.10 -51.93 -0.42 0.30 16 43 H 0.12 3.23 6.17 -52.49 -0.32 2.91 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -30.05 368.34 -9.08 -39.12 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -4.72 Total: 14.93 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -4.50 Total: -7.87 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -0.10 Total: -40.60 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.27 Total: -24.53 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.05 -9.08 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412012648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.154 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds