Wall clock time and date at job start Tue Mar 31 2020 05:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47079 * 2 1 4 4 C 1.50706 * 109.47091 * 240.00157 * 2 1 3 5 5 H 1.07994 * 119.99523 * 245.69593 * 4 2 1 6 6 C 1.37877 * 119.99911 * 65.68893 * 4 2 1 7 7 N 1.31515 * 119.99694 * 197.41497 * 6 4 2 8 8 Si 1.86799 * 120.00072 * 17.69779 * 6 4 2 9 9 H 1.48497 * 109.46901 * 179.72090 * 8 6 4 10 10 H 1.48498 * 109.47124 * 299.72098 * 8 6 4 11 11 H 1.48502 * 109.47223 * 59.72023 * 8 6 4 12 12 N 1.46502 * 109.47216 * 120.00001 * 2 1 3 13 13 C 1.34778 * 119.99654 * 274.99768 * 12 2 1 14 14 O 1.21353 * 120.00304 * 0.02562 * 13 12 2 15 15 C 1.49344 * 119.99614 * 180.02562 * 13 12 2 16 16 O 1.21383 * 119.99901 * 359.97438 * 15 13 12 17 17 N 1.34777 * 120.00043 * 180.02562 * 15 13 12 18 18 C 1.39749 * 119.99924 * 185.31180 * 17 15 13 19 19 C 1.38970 * 120.00575 * 212.80757 * 18 17 15 20 20 C 1.37997 * 119.98321 * 179.74356 * 19 18 17 21 21 C 1.38863 * 120.01411 * 0.52906 * 20 19 18 22 22 N 1.40299 * 119.99118 * 179.72025 * 21 20 19 23 23 C 1.35048 * 127.38691 * 359.73516 * 22 21 20 24 24 N 1.30745 * 107.27704 * 179.83815 * 23 22 21 25 25 N 1.28417 * 110.64157 * 0.44029 * 24 23 22 26 26 N 1.28951 * 110.20288 * 359.72522 * 25 24 23 27 27 C 1.38865 * 120.01999 * 359.74395 * 21 20 19 28 28 C 1.37994 * 120.01328 * 359.97438 * 27 21 20 29 29 H 1.09004 * 109.47187 * 295.57556 * 1 2 3 30 30 H 1.09000 * 109.47449 * 55.58229 * 1 2 3 31 31 H 1.09004 * 109.47007 * 175.58466 * 1 2 3 32 32 H 0.96997 * 120.00319 * 355.23067 * 7 6 4 33 33 H 0.96996 * 120.00191 * 95.00440 * 12 2 1 34 34 H 0.97005 * 119.99610 * 5.30138 * 17 15 13 35 35 H 1.07992 * 120.00678 * 359.97438 * 19 18 17 36 36 H 1.07998 * 119.99397 * 180.29480 * 20 19 18 37 37 H 1.08001 * 126.36011 * 359.97438 * 23 22 21 38 38 H 1.08008 * 119.98945 * 179.97438 * 27 21 20 39 39 H 1.08006 * 120.00429 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5752 -1.6390 -1.1341 6 6 1.7987 -0.1749 -2.4794 7 7 1.9190 -0.9280 -3.5508 8 14 1.3189 1.6224 -2.6501 9 1 1.1320 1.9505 -4.0863 10 1 0.0510 1.8680 -1.9171 11 1 2.3924 2.4773 -2.0827 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8581 1.1592 2.4117 15 6 2.6455 -0.7221 3.5763 16 8 2.9341 -1.8998 3.5218 17 7 2.7738 -0.0498 4.7374 18 6 3.3436 -0.6770 5.8487 19 6 2.9103 -0.3518 7.1284 20 6 3.4697 -0.9753 8.2251 21 6 4.4729 -1.9195 8.0507 22 7 5.0453 -2.5488 9.1664 23 6 4.7409 -2.3484 10.4668 24 7 5.5070 -3.1397 11.1713 25 7 6.2814 -3.8199 10.4053 26 7 6.0631 -3.5188 9.1706 27 6 4.9101 -2.2406 6.7724 28 6 4.3474 -1.6220 5.6747 29 1 -0.3634 0.4437 0.9270 30 1 -0.3634 0.5808 -0.8477 31 1 -0.3633 -1.0247 -0.0791 32 1 2.2387 -1.8402 -3.4691 33 1 2.2491 -1.6317 1.1526 34 1 2.4707 0.8694 4.8017 35 1 2.1335 0.3859 7.2644 36 1 3.1297 -0.7262 9.2195 37 1 4.0004 -1.6636 10.8529 38 1 5.6908 -2.9747 6.6374 39 1 4.6879 -1.8715 4.6806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438879404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:11 Heat of formation + Delta-G solvation = 90.385855 kcal Electronic energy + Delta-G solvation = -26229.370699 eV Core-core repulsion = 22175.637666 eV Total energy + Delta-G solvation = -4053.733034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.123 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.61728 -41.25292 -39.74945 -38.40072 -36.30472 -35.36061 -34.18148 -32.81701 -32.58971 -31.67221 -30.10312 -29.66701 -26.05421 -25.06633 -24.56386 -24.32950 -22.55192 -22.25532 -20.85522 -19.89994 -19.22823 -19.01728 -17.97855 -17.32951 -17.03143 -16.66220 -16.33267 -16.11608 -15.36112 -15.19280 -14.87218 -14.29013 -14.20337 -14.01391 -13.86819 -13.62653 -13.48474 -13.38150 -12.86658 -12.72521 -12.38718 -12.31474 -11.95271 -11.87193 -11.63755 -11.52602 -11.44602 -10.95227 -10.65009 -10.61136 -10.15723 -9.93150 -9.72029 -9.45945 -9.23012 -8.60260 -8.54042 -8.44655 -6.71108 -4.35663 -0.18669 0.67217 0.97981 1.30040 1.54087 1.83506 2.25126 3.03628 3.26333 3.34289 3.36253 3.48602 3.55958 3.69674 3.74003 4.15350 4.29162 4.30478 4.37888 4.57893 4.69103 4.84445 4.88839 5.00497 5.05065 5.18437 5.30818 5.58597 5.67879 5.79503 5.93999 6.18890 6.29888 6.30733 6.45030 6.66716 6.69337 6.95300 7.13381 7.35418 7.50543 7.95456 8.03714 8.14511 8.31529 8.65748 9.34020 10.70325 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.035524 B = 0.002017 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.000473 B =13877.784217 C =14383.928871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.239 3.761 3 H 0.047 0.953 4 C -0.623 4.623 5 H 0.065 0.935 6 C 0.041 3.959 7 N -0.892 5.892 8 Si 1.042 2.958 9 H -0.281 1.281 10 H -0.270 1.270 11 H -0.279 1.279 12 N -0.659 5.659 13 C 0.495 3.505 14 O -0.535 6.535 15 C 0.510 3.490 16 O -0.496 6.496 17 N -0.652 5.652 18 C 0.168 3.832 19 C -0.121 4.121 20 C -0.095 4.095 21 C 0.102 3.898 22 N -0.319 5.319 23 C 0.222 3.778 24 N -0.331 5.331 25 N -0.038 5.038 26 N -0.076 5.076 27 C -0.074 4.074 28 C -0.102 4.102 29 H 0.030 0.970 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.271 0.729 33 H 0.407 0.593 34 H 0.427 0.573 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.239 0.761 38 H 0.146 0.854 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 2.734 24.604 24.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.137 3.863 3 H 0.064 0.936 4 C -0.661 4.661 5 H 0.083 0.917 6 C -0.167 4.167 7 N -0.524 5.524 8 Si 0.869 3.131 9 H -0.207 1.207 10 H -0.196 1.196 11 H -0.205 1.205 12 N -0.307 5.307 13 C 0.274 3.726 14 O -0.414 6.414 15 C 0.293 3.707 16 O -0.368 6.368 17 N -0.299 5.299 18 C 0.072 3.928 19 C -0.143 4.143 20 C -0.117 4.117 21 C 0.009 3.991 22 N -0.109 5.109 23 C -0.075 4.075 24 N -0.181 5.181 25 N -0.033 5.033 26 N -0.061 5.061 27 C -0.095 4.095 28 C -0.123 4.123 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.243 0.757 34 H 0.266 0.734 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.255 0.745 38 H 0.164 0.836 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.722 2.847 23.554 23.788 hybrid contribution -0.264 -0.600 0.872 1.091 sum 1.458 2.246 24.426 24.572 Atomic orbital electron populations 1.22546 0.98154 1.01409 1.00163 1.19264 0.91082 0.94306 0.81655 0.93555 1.22038 1.42455 1.10833 0.90761 0.91703 1.25709 0.94158 1.05239 0.91588 1.70868 1.40329 1.09920 1.31272 0.84091 0.77536 0.74921 0.76517 1.20702 1.19629 1.20517 1.46281 1.60951 1.14745 1.08747 1.19631 0.81214 0.87286 0.84494 1.90735 1.50788 1.15121 1.84709 1.20972 0.78106 0.86938 0.84689 1.90780 1.46493 1.15049 1.84496 1.43308 1.59887 1.17695 1.08994 1.17935 0.92848 0.95312 0.86726 1.20768 1.01190 1.02465 0.89838 1.20589 0.95417 0.95604 1.00091 1.17557 0.98638 0.98338 0.84541 1.49066 1.26626 1.28557 1.06647 1.27416 1.00050 0.99499 0.80516 1.74489 1.07303 1.08705 1.27577 1.78098 1.14876 1.15365 0.94914 1.82705 1.03459 1.04152 1.15805 1.20856 0.99903 0.99593 0.89160 1.21198 0.94289 0.96531 1.00292 0.95054 0.91440 0.93079 0.91883 0.75743 0.73394 0.83600 0.84184 0.74492 0.83583 0.83012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 9.16 37.16 0.34 -3.08 16 2 C 0.24 5.36 2.14 -69.08 -0.15 5.21 16 3 H 0.05 1.09 6.22 -51.93 -0.32 0.77 16 4 C -0.62 -16.08 9.00 -34.44 -0.31 -16.39 16 5 H 0.06 1.77 7.96 -52.49 -0.42 1.35 16 6 C 0.04 1.09 5.34 -17.82 -0.10 0.99 16 7 N -0.89 -25.62 13.70 55.43 0.76 -24.86 16 8 Si 1.04 23.56 26.42 -169.99 -4.49 19.07 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.27 -5.61 5.51 56.52 0.31 -5.30 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.66 -12.62 5.06 -55.40 -0.28 -12.90 16 13 C 0.50 8.46 7.85 -11.63 -0.09 8.36 16 14 O -0.53 -9.95 16.15 5.49 0.09 -9.86 16 15 C 0.51 7.08 7.62 -11.64 -0.09 6.99 16 16 O -0.50 -7.62 14.14 5.47 0.08 -7.54 16 17 N -0.65 -6.63 5.32 -10.28 -0.05 -6.69 16 18 C 0.17 1.50 6.28 -83.71 -0.53 0.97 16 19 C -0.12 -0.71 9.96 -39.40 -0.39 -1.10 16 20 C -0.10 -0.48 9.48 -39.44 -0.37 -0.86 16 21 C 0.10 0.79 6.71 -83.52 -0.56 0.23 16 22 N -0.32 -2.75 3.85 -11.71 -0.05 -2.79 16 23 C 0.22 1.46 12.15 -90.17 -1.10 0.36 16 24 N -0.33 -3.39 12.15 29.64 0.36 -3.03 16 25 N -0.04 -0.46 13.39 60.35 0.81 0.35 16 26 N -0.08 -0.87 13.33 60.35 0.80 -0.07 16 27 C -0.07 -0.66 9.69 -39.44 -0.38 -1.05 16 28 C -0.10 -1.01 8.65 -39.41 -0.34 -1.35 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.43 4.81 -51.93 -0.25 1.18 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.27 7.74 8.73 -40.82 -0.36 7.38 16 33 H 0.41 7.45 7.99 -40.82 -0.33 7.13 16 34 H 0.43 3.57 8.29 -40.82 -0.34 3.23 16 35 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.14 0.19 6.87 -52.49 -0.36 -0.17 16 37 H 0.24 0.17 7.18 -52.49 -0.38 -0.20 16 38 H 0.15 1.29 7.76 -52.48 -0.41 0.88 16 39 H 0.15 1.70 6.39 -52.48 -0.34 1.37 16 LS Contribution 343.84 15.07 5.18 5.18 Total: -1.00 -32.60 343.84 -4.50 -37.11 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -3.65 Total: 6.74 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -4.06 Total: -0.72 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 2.35 Total: -49.98 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.17 Total: -17.40 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -4.49 Total: 19.07 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.60 -4.50 -37.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438879404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.493 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds