Wall clock time and date at job start Tue Mar 31 2020 05:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47119 * 2 1 4 4 C 1.50704 * 109.47374 * 119.99843 * 2 1 3 5 5 H 1.07997 * 119.99992 * 120.00310 * 4 2 1 6 6 C 1.37875 * 119.99575 * 299.99731 * 4 2 1 7 7 N 1.31516 * 120.00306 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99860 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47578 * 270.00408 * 8 6 4 10 10 H 1.48500 * 109.47012 * 30.00777 * 8 6 4 11 11 H 1.48501 * 109.47335 * 149.99915 * 8 6 4 12 12 N 1.46500 * 109.47287 * 239.99631 * 2 1 3 13 13 C 1.34775 * 119.99711 * 84.99928 * 12 2 1 14 14 O 1.21359 * 120.00348 * 359.97438 * 13 12 2 15 15 C 1.49341 * 119.99928 * 180.02562 * 13 12 2 16 16 O 1.21387 * 120.00217 * 359.97438 * 15 13 12 17 17 N 1.34781 * 120.00259 * 179.97438 * 15 13 12 18 18 C 1.39754 * 120.00368 * 175.38538 * 17 15 13 19 19 C 1.38957 * 120.01306 * 214.83522 * 18 17 15 20 20 C 1.37998 * 119.98622 * 179.74556 * 19 18 17 21 21 C 1.38869 * 120.01219 * 0.53121 * 20 19 18 22 22 N 1.40297 * 119.98861 * 179.72224 * 21 20 19 23 23 C 1.35055 * 127.38482 * 359.72877 * 22 21 20 24 24 N 1.30756 * 107.27073 * 179.83786 * 23 22 21 25 25 N 1.28421 * 110.64247 * 0.44625 * 24 23 22 26 26 N 1.28952 * 110.20323 * 359.71739 * 25 24 23 27 27 C 1.38862 * 120.01990 * 359.74448 * 21 20 19 28 28 C 1.38001 * 120.01488 * 359.97438 * 27 21 20 29 29 H 1.08997 * 109.46607 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46830 * 300.00055 * 1 2 3 31 31 H 1.08995 * 109.46709 * 60.00152 * 1 2 3 32 32 H 0.97000 * 120.00026 * 179.97438 * 7 6 4 33 33 H 0.96993 * 120.00414 * 265.00338 * 12 2 1 34 34 H 0.97002 * 119.99671 * 355.38840 * 17 15 13 35 35 H 1.08002 * 120.00490 * 359.97438 * 19 18 17 36 36 H 1.08003 * 119.99353 * 180.29926 * 20 19 18 37 37 H 1.07993 * 126.36454 * 359.97438 * 23 22 21 38 38 H 1.08003 * 119.99101 * 180.02562 * 27 21 20 39 39 H 1.07998 * 120.00514 * 180.02562 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5884 1.1314 6 6 1.6994 -0.2392 2.4827 7 7 0.9429 0.8298 2.6033 8 14 2.3215 -1.1201 4.0079 9 1 1.3429 -2.1614 4.4120 10 1 3.6295 -1.7580 3.7122 11 1 2.4868 -0.1410 5.1122 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8580 1.1590 -2.4118 15 6 2.6444 -0.7225 -3.5766 16 8 2.9331 -1.9003 -3.5220 17 7 2.7726 -0.0503 -4.7377 18 6 3.3282 -0.6825 -5.8535 19 6 4.1116 0.0413 -6.7441 20 6 4.6642 -0.5846 -7.8428 21 6 4.4284 -1.9351 -8.0644 22 7 4.9857 -2.5696 -9.1848 23 6 5.7636 -2.0145 -10.1391 24 7 6.0647 -2.9586 -10.9922 25 7 5.5225 -4.0704 -10.6470 26 7 4.8491 -3.9183 -9.5579 27 6 3.6409 -2.6575 -7.1778 28 6 3.0926 -2.0339 -6.0756 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 0.7083 1.1611 3.4843 33 1 2.2490 -1.6318 -1.1526 34 1 2.4793 0.8722 -4.7990 35 1 4.2909 1.0928 -6.5745 36 1 5.2770 -0.0232 -8.5325 37 1 6.0801 -0.9832 -10.1873 38 1 3.4582 -3.7079 -7.3503 39 1 2.4805 -2.5960 -5.3858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438879405.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:14 Heat of formation + Delta-G solvation = 89.625172 kcal Electronic energy + Delta-G solvation = -26159.542305 eV Core-core repulsion = 22105.776286 eV Total energy + Delta-G solvation = -4053.766019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.123 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.58697 -41.15872 -39.64291 -38.25133 -36.22460 -35.19690 -34.11718 -32.78650 -32.52936 -31.61593 -29.80287 -29.19967 -25.93689 -25.40675 -24.52420 -24.30713 -22.52032 -22.21218 -20.96183 -19.80970 -19.17090 -18.86773 -17.83856 -17.00334 -16.61972 -16.57486 -16.01043 -15.89150 -15.44069 -15.07803 -14.81187 -14.40438 -14.16599 -13.99643 -13.84103 -13.60466 -13.52003 -13.27447 -12.69694 -12.59261 -12.26144 -11.92848 -11.82339 -11.46706 -11.37963 -11.22394 -11.07834 -10.92429 -10.89642 -10.51930 -10.46223 -10.35143 -9.66122 -9.30602 -9.22220 -8.72438 -8.53372 -8.26563 -6.25693 -4.35770 -0.14555 0.72445 1.04772 1.33287 1.63095 1.86158 2.36699 3.10430 3.18336 3.25592 3.28145 3.48924 3.59410 3.76726 3.83138 4.20493 4.24873 4.34949 4.41635 4.64196 4.83106 4.91951 4.93077 5.07244 5.07997 5.23223 5.36610 5.63998 5.75037 5.85885 5.99292 6.36673 6.60826 6.71753 6.79297 6.91213 7.06628 7.24363 7.51306 7.59687 7.71625 7.95311 7.98066 8.28144 8.46931 8.73385 9.31706 10.80232 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.030242 B = 0.001969 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.642562 B =14220.095259 C =14700.928449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.261 3.739 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.065 0.935 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.284 1.284 12 N -0.665 5.665 13 C 0.495 3.505 14 O -0.533 6.533 15 C 0.510 3.490 16 O -0.500 6.500 17 N -0.652 5.652 18 C 0.166 3.834 19 C -0.120 4.120 20 C -0.097 4.097 21 C 0.102 3.898 22 N -0.318 5.318 23 C 0.222 3.778 24 N -0.332 5.332 25 N -0.038 5.038 26 N -0.077 5.077 27 C -0.077 4.077 28 C -0.102 4.102 29 H 0.031 0.969 30 H 0.095 0.905 31 H 0.017 0.983 32 H 0.266 0.734 33 H 0.403 0.597 34 H 0.427 0.573 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.239 0.761 38 H 0.146 0.854 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.734 -0.124 -20.679 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.577 4.577 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.210 1.210 12 N -0.313 5.313 13 C 0.273 3.727 14 O -0.412 6.412 15 C 0.293 3.707 16 O -0.373 6.373 17 N -0.299 5.299 18 C 0.069 3.931 19 C -0.141 4.141 20 C -0.119 4.119 21 C 0.009 3.991 22 N -0.108 5.108 23 C -0.075 4.075 24 N -0.181 5.181 25 N -0.033 5.033 26 N -0.062 5.062 27 C -0.098 4.098 28 C -0.123 4.123 29 H 0.050 0.950 30 H 0.114 0.886 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.238 0.762 34 H 0.266 0.734 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.255 0.745 38 H 0.163 0.837 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.613 -1.349 -20.943 21.725 hybrid contribution 0.236 0.501 1.314 1.426 sum 5.850 -0.848 -19.629 20.500 Atomic orbital electron populations 1.22105 0.97699 0.99645 1.01295 1.19021 0.91520 0.94157 0.79236 0.92698 1.21172 1.32966 1.13551 0.89964 0.91712 1.24878 0.94658 0.94906 0.99140 1.69884 1.35574 1.22302 1.24186 0.86381 0.79281 0.79260 0.81835 1.20405 1.19742 1.20987 1.46540 1.60931 1.14583 1.09289 1.19555 0.81406 0.87312 0.84433 1.90746 1.50760 1.15125 1.84569 1.21116 0.77740 0.87125 0.84705 1.90744 1.46409 1.15223 1.84882 1.43303 1.60327 1.17833 1.08478 1.17966 0.94510 0.92886 0.87699 1.20809 0.97364 1.01193 0.94748 1.20590 1.01157 0.91242 0.98864 1.17574 1.01733 0.92127 0.87650 1.49070 1.34487 1.08528 1.18758 1.27420 0.92022 1.02400 0.85640 1.74492 1.22771 0.95713 1.25140 1.78094 1.04065 1.16599 1.04557 1.82696 1.20328 0.92358 1.10786 1.20881 0.95416 1.00925 0.92532 1.21346 1.00195 0.93833 0.96892 0.95031 0.88632 0.96438 0.92373 0.76243 0.73393 0.83578 0.84227 0.74496 0.83656 0.82583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.26 37.16 0.34 -3.09 16 2 C 0.26 6.20 2.56 -69.08 -0.18 6.02 16 3 H 0.06 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.54 -13.59 8.73 -34.44 -0.30 -13.89 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -23.58 11.32 55.43 0.63 -22.95 16 8 Si 0.91 19.92 29.54 -169.99 -5.02 14.90 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.66 -13.09 5.06 -55.40 -0.28 -13.37 16 13 C 0.49 8.84 7.85 -11.64 -0.09 8.75 16 14 O -0.53 -10.61 16.14 5.49 0.09 -10.53 16 15 C 0.51 7.32 7.73 -11.63 -0.09 7.23 16 16 O -0.50 -7.76 13.90 5.46 0.08 -7.69 16 17 N -0.65 -6.98 5.32 -10.28 -0.05 -7.03 16 18 C 0.17 1.54 6.30 -83.71 -0.53 1.01 16 19 C -0.12 -0.76 9.96 -39.40 -0.39 -1.15 16 20 C -0.10 -0.53 9.48 -39.44 -0.37 -0.90 16 21 C 0.10 0.81 6.71 -83.52 -0.56 0.25 16 22 N -0.32 -2.80 3.85 -11.71 -0.05 -2.85 16 23 C 0.22 1.50 12.15 -90.15 -1.10 0.41 16 24 N -0.33 -3.44 12.15 29.64 0.36 -3.08 16 25 N -0.04 -0.47 13.39 60.35 0.81 0.34 16 26 N -0.08 -0.89 13.33 60.35 0.80 -0.08 16 27 C -0.08 -0.69 9.69 -39.44 -0.38 -1.08 16 28 C -0.10 -1.02 8.69 -39.40 -0.34 -1.36 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.40 7.36 8.01 -40.82 -0.33 7.03 16 34 H 0.43 3.87 8.30 -40.82 -0.34 3.53 16 35 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.14 0.25 6.87 -52.48 -0.36 -0.12 16 37 H 0.24 0.24 7.18 -52.49 -0.38 -0.14 16 38 H 0.15 1.29 7.76 -52.48 -0.41 0.88 16 39 H 0.16 1.75 6.22 -52.49 -0.33 1.43 16 LS Contribution 348.12 15.07 5.25 5.25 Total: -1.00 -31.44 348.12 -5.13 -36.57 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -3.65 Total: 6.68 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -4.08 Total: 3.85 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 2.22 Total: -49.03 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.16 Total: -18.21 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.44 -5.13 -36.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438879405.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.190 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds