Wall clock time and date at job start Tue Mar 31 2020 05:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47539 * 2 1 4 4 C 1.46496 * 120.00223 * 270.00023 * 3 2 1 5 5 C 1.50697 * 109.47335 * 270.00056 * 4 3 2 6 6 H 1.07998 * 119.99876 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00362 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99555 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00168 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47007 * 59.99520 * 9 7 5 11 11 H 1.48494 * 109.46908 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46603 * 299.99344 * 9 7 5 13 13 C 1.34775 * 120.00135 * 89.99624 * 3 2 1 14 14 O 1.21279 * 120.00300 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99773 * 0.02562 * 13 3 2 16 16 N 1.46506 * 109.47289 * 179.97438 * 15 13 3 17 17 S 1.65593 * 120.00245 * 164.99838 * 16 15 13 18 18 O 1.42095 * 106.40441 * 178.54314 * 17 16 15 19 19 O 1.42107 * 106.40414 * 311.46258 * 17 16 15 20 20 C 1.76199 * 107.21807 * 65.00204 * 17 16 15 21 21 C 1.39871 * 126.04354 * 90.02748 * 20 17 16 22 22 N 1.30834 * 108.20464 * 179.97438 * 21 20 17 23 23 N 1.40087 * 108.20453 * 359.97438 * 22 21 20 24 24 C 1.46498 * 126.03486 * 180.02562 * 23 22 21 25 25 C 1.34945 * 107.92728 * 359.76507 * 23 22 21 26 26 H 1.09003 * 109.47221 * 300.00363 * 1 2 3 27 27 H 1.09001 * 109.47274 * 60.00246 * 1 2 3 28 28 H 1.09005 * 109.47543 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47221 * 239.99637 * 2 1 3 30 30 H 1.09002 * 109.46764 * 120.00327 * 2 1 3 31 31 H 1.09002 * 109.47248 * 29.99793 * 4 3 2 32 32 H 1.09004 * 109.47206 * 149.99350 * 4 3 2 33 33 H 0.97000 * 119.99408 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47438 * 59.99564 * 15 13 3 35 35 H 1.09004 * 109.47113 * 299.99819 * 15 13 3 36 36 H 0.97000 * 119.99344 * 345.00166 * 16 15 13 37 37 H 1.08000 * 125.89502 * 359.97438 * 21 20 17 38 38 H 1.09005 * 109.47043 * 89.98090 * 24 23 22 39 39 H 1.09001 * 109.47266 * 209.97851 * 24 23 22 40 40 H 1.09003 * 109.47578 * 329.98541 * 24 23 22 41 41 H 1.07999 * 126.12655 * 180.23386 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3903 -2.8774 8 7 3.3495 3.1265 -3.6174 9 14 5.9140 2.0973 -3.4163 10 1 6.1418 0.6406 -3.5941 11 1 6.1614 2.7972 -4.7023 12 1 6.8411 2.6206 -2.3809 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9922 1.3059 2.4723 16 7 2.3100 2.2033 3.5859 17 16 1.7890 1.8415 5.1155 18 8 2.2809 2.8719 5.9612 19 8 0.4093 1.5200 5.0039 20 6 2.6066 0.3605 5.6084 21 6 3.8351 0.2805 6.2722 22 7 4.1128 -0.9830 6.4674 23 7 3.0678 -1.7482 5.9336 24 6 2.9799 -3.2106 5.9402 25 6 2.1537 -0.9003 5.4174 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5818 1.6877 -2.0284 32 1 2.0956 3.1410 -1.1383 33 1 3.6757 3.5170 -4.4433 34 1 2.6226 0.4185 2.5299 35 1 0.9443 1.0114 2.5302 36 1 2.8256 3.0094 3.4271 37 1 4.4486 1.1174 6.5719 38 1 2.4720 -3.5400 6.8466 39 1 2.4189 -3.5448 5.0674 40 1 3.9835 -3.6351 5.9115 41 1 1.2280 -1.1782 4.9356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439134367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:06 Heat of formation + Delta-G solvation = -26.062971 kcal Electronic energy + Delta-G solvation = -26465.572520 eV Core-core repulsion = 22509.941086 eV Total energy + Delta-G solvation = -3955.631433 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.61099 -39.30039 -37.17928 -35.82938 -35.58987 -34.49703 -33.80425 -32.80841 -30.83329 -30.18549 -28.22014 -27.44145 -26.02234 -23.10875 -22.52973 -22.30327 -21.66611 -19.57316 -18.78447 -18.27005 -17.51772 -16.53851 -16.43921 -16.11413 -16.02762 -15.76913 -15.40152 -14.96506 -14.78357 -14.55228 -13.86678 -13.59576 -13.46039 -13.40439 -13.30084 -13.20307 -12.79419 -12.22929 -12.16399 -12.12731 -12.01376 -11.93148 -11.89931 -11.62975 -11.24952 -10.97593 -10.93485 -10.82369 -10.58068 -10.18852 -9.98964 -9.74098 -9.66508 -9.54782 -9.06970 -8.47458 -7.78492 -6.08725 -4.13905 0.42403 1.19603 1.97693 2.01983 3.07955 3.22912 3.28631 3.33812 3.37035 3.78643 3.79494 3.94239 4.22309 4.40341 4.44545 4.62386 4.71464 4.79383 4.90747 5.09314 5.13392 5.17350 5.25754 5.27484 5.36112 5.55893 5.65245 5.72511 5.97855 6.02988 6.16158 6.35066 6.43120 6.97189 7.05827 7.06661 7.38412 7.44663 7.86866 8.17524 8.28809 8.80513 8.95563 9.51268 10.99361 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.013793 B = 0.003303 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.517028 B = 8475.490762 C = 8793.709142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.103 3.897 3 N -0.593 5.593 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.504 3.496 14 O -0.531 6.531 15 C 0.098 3.902 16 N -1.103 6.103 17 S 2.733 3.267 18 O -0.958 6.958 19 O -0.964 6.964 20 C -0.817 4.817 21 C 0.137 3.863 22 N -0.294 5.294 23 N -0.363 5.363 24 C 0.090 3.910 25 C 0.176 3.824 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.429 0.571 37 H 0.200 0.800 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.915 -14.234 17.126 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 N -0.325 5.325 4 C 0.128 3.872 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.289 3.711 14 O -0.408 6.408 15 C -0.033 4.033 16 N -0.867 5.867 17 S 2.819 3.181 18 O -0.948 6.948 19 O -0.954 6.954 20 C -0.915 4.915 21 C -0.052 4.052 22 N -0.113 5.113 23 N -0.140 5.140 24 C -0.051 4.051 25 C 0.022 3.978 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.268 0.732 37 H 0.216 0.784 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -4.527 -14.280 17.934 23.367 hybrid contribution 1.113 -0.075 -0.963 1.474 sum -3.415 -14.355 16.970 22.488 Atomic orbital electron populations 1.22261 0.96473 1.01650 1.02749 1.21480 0.93767 0.84058 1.02809 1.48238 1.63366 1.13311 1.07599 1.19310 0.96345 0.93734 0.77849 1.21376 0.96869 1.32186 1.06385 0.92513 1.24928 0.97840 0.94858 0.96378 1.69920 1.35745 1.33208 1.14352 0.86560 0.84771 0.78201 0.77877 1.20304 1.21150 1.20174 1.20041 0.79049 0.87124 0.84919 1.90671 1.45773 1.17811 1.86569 1.21169 1.02311 0.92852 0.86946 1.55258 1.73210 1.35355 1.22839 1.00653 0.73219 0.72583 0.71621 1.93580 1.81631 1.54804 1.64821 1.93564 1.30371 1.85289 1.86195 1.31746 1.13661 1.18108 1.27976 1.23586 0.93109 0.95158 0.93390 1.77464 1.09344 1.03627 1.20882 1.49124 1.14884 1.07460 1.42522 1.22092 1.05262 0.73649 1.04049 1.22536 0.94315 0.88433 0.92498 0.92690 0.91822 0.92005 0.89634 0.91817 0.94791 0.93724 0.92598 0.89626 0.87951 0.73217 0.78371 0.89974 0.88604 0.88592 0.78888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.24 37.16 0.38 -1.67 16 2 C 0.10 1.45 5.93 -4.05 -0.02 1.43 16 3 N -0.59 -11.57 2.46 -175.07 -0.43 -12.00 16 4 C 0.25 6.15 5.16 -5.20 -0.03 6.12 16 5 C -0.53 -14.47 9.39 -34.44 -0.32 -14.79 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 9 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.50 9.69 7.74 -10.98 -0.09 9.60 16 14 O -0.53 -12.49 15.31 5.56 0.09 -12.41 16 15 C 0.10 1.30 5.25 -5.19 -0.03 1.28 16 16 N -1.10 -14.66 5.93 -11.65 -0.07 -14.73 16 17 S 2.73 33.52 5.88 -107.50 -0.63 32.89 16 18 O -0.96 -14.25 17.87 -57.17 -1.02 -15.27 16 19 O -0.96 -13.38 17.31 -57.17 -0.99 -14.37 16 20 C -0.82 -8.61 6.14 -40.01 -0.25 -8.85 16 21 C 0.14 1.50 11.81 -17.37 -0.21 1.30 16 22 N -0.29 -3.35 12.58 30.62 0.39 -2.96 16 23 N -0.36 -3.15 4.01 -68.16 -0.27 -3.43 16 24 C 0.09 0.37 11.47 59.85 0.69 1.05 16 25 C 0.18 1.49 11.23 -17.22 -0.19 1.29 16 26 H 0.05 0.62 7.22 -51.93 -0.38 0.25 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 30 H 0.06 0.68 6.44 -51.93 -0.33 0.35 16 31 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 32 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 34 H 0.09 0.91 7.40 -51.93 -0.38 0.53 16 35 H 0.10 1.15 6.80 -51.93 -0.35 0.79 16 36 H 0.43 6.16 7.70 -34.47 -0.27 5.89 16 37 H 0.20 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -38.54 367.40 -7.30 -45.83 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.44 Total: 1.40 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -0.16 Total: -1.61 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.35 Total: -58.37 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -1.93 Total: -42.05 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 33.52 SS G_CDS: -0.63 Total: 32.89 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.54 -7.30 -45.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439134367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.769 kcal (2) G-P(sol) polarization free energy of solvation -38.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds