Wall clock time and date at job start Tue Mar 31 2020 05:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47057 * 2 1 4 4 C 1.50701 * 109.47292 * 120.00069 * 2 1 3 5 5 H 1.07994 * 119.99733 * 119.99773 * 4 2 1 6 6 C 1.37870 * 119.99664 * 299.99940 * 4 2 1 7 7 N 1.31511 * 120.00413 * 0.02562 * 6 4 2 8 8 Si 1.86810 * 119.99873 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47208 * 270.00157 * 8 6 4 10 10 H 1.48506 * 109.46700 * 29.99926 * 8 6 4 11 11 H 1.48492 * 109.47095 * 149.99853 * 8 6 4 12 12 N 1.46507 * 109.46893 * 239.99927 * 2 1 3 13 13 C 1.46494 * 120.00030 * 300.00229 * 12 2 1 14 14 C 1.34773 * 119.99827 * 119.99978 * 12 2 1 15 15 O 1.21392 * 120.00026 * 356.44176 * 14 12 2 16 16 C 1.49240 * 120.00005 * 176.44281 * 14 12 2 17 17 O 1.21745 * 119.99943 * 5.92525 * 16 14 12 18 18 N 1.33165 * 120.00086 * 185.92631 * 16 14 12 19 19 C 1.33383 * 120.00205 * 179.97438 * 18 16 14 20 20 C 1.40854 * 126.34972 * 0.02887 * 19 18 16 21 21 C 1.35304 * 108.22525 * 180.02562 * 20 19 18 22 22 N 1.36222 * 108.88080 * 359.97438 * 21 20 19 23 23 C 1.46498 * 125.86266 * 180.02562 * 22 21 20 24 24 C 1.52994 * 109.47226 * 85.02509 * 23 22 21 25 25 F 1.39902 * 109.47263 * 65.00219 * 24 23 22 26 26 F 1.39904 * 109.46857 * 185.00046 * 24 23 22 27 27 N 1.37277 * 126.35337 * 179.71607 * 19 18 16 28 28 H 0.96999 * 126.34498 * 0.02562 * 27 19 18 29 29 H 1.09001 * 109.47239 * 300.00421 * 1 2 3 30 30 H 1.09005 * 109.47511 * 59.99655 * 1 2 3 31 31 H 1.09005 * 109.47369 * 179.97438 * 1 2 3 32 32 H 0.97001 * 120.00097 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47479 * 95.98687 * 13 12 2 34 34 H 1.09002 * 109.47151 * 215.98847 * 13 12 2 35 35 H 1.09005 * 109.47268 * 335.98378 * 13 12 2 36 36 H 1.08001 * 125.88624 * 359.97438 * 20 19 18 37 37 H 1.07995 * 125.55937 * 179.97438 * 21 20 19 38 38 H 1.09005 * 109.47028 * 205.02445 * 23 22 21 39 39 H 1.09005 * 109.46873 * 325.02052 * 23 22 21 40 40 H 1.08997 * 109.47368 * 304.99860 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4826 7 7 0.9428 0.8296 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 1.3428 -2.1617 4.4119 10 1 3.6294 -1.7584 3.7121 11 1 2.4867 -0.1414 5.1122 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7931 -0.0357 -2.0834 15 8 3.0332 1.1437 -1.9251 16 6 3.3559 -0.7603 -3.2605 17 8 3.0292 -1.9125 -3.4791 18 7 4.2153 -0.1465 -4.0716 19 6 4.7187 -0.7943 -5.1233 20 6 4.4351 -2.1214 -5.5005 21 6 5.1429 -2.4041 -6.6184 22 7 5.8684 -1.3062 -6.9702 23 6 6.7653 -1.2037 -8.1240 24 6 5.9571 -0.8227 -9.3660 25 9 5.4214 0.4588 -9.1987 26 9 6.7925 -0.8361 -10.4881 27 7 5.6047 -0.2893 -6.0423 28 1 5.9810 0.6047 -6.0470 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.7088 1.1612 3.4844 33 1 0.7982 -2.1451 -2.0878 34 1 2.5056 -2.6084 -1.8916 35 1 1.4258 -2.5697 -0.4771 36 1 3.7682 -2.7972 -4.9856 37 1 5.1342 -3.3465 -7.1457 38 1 7.5184 -0.4393 -7.9320 39 1 7.2554 -2.1631 -8.2896 40 1 5.1479 -1.5393 -9.5068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439405413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:29 Heat of formation + Delta-G solvation = -30.710737 kcal Electronic energy + Delta-G solvation = -27770.511293 eV Core-core repulsion = 23260.837931 eV Total energy + Delta-G solvation = -4509.673362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.79152 -47.79971 -41.88595 -39.65036 -37.67708 -35.36683 -34.94537 -32.83222 -32.37410 -31.97397 -29.28606 -28.59442 -25.94068 -25.13831 -24.86968 -23.79984 -22.35206 -22.01534 -20.28861 -19.02462 -18.39904 -18.07059 -17.79951 -17.05905 -16.47891 -16.30098 -16.00722 -15.52770 -15.36154 -15.23611 -14.76027 -14.70434 -14.46007 -14.14533 -14.10964 -14.01877 -13.60855 -13.30518 -13.09822 -12.90445 -12.27582 -12.12139 -11.96039 -11.45809 -11.39900 -10.99077 -10.94683 -10.71099 -10.55185 -10.36737 -10.12899 -10.05373 -9.98605 -9.18224 -8.99426 -8.37190 -8.17409 -7.89104 -7.35426 -5.96066 -4.03321 0.56195 0.69678 1.98383 2.73500 2.90290 3.19413 3.33432 3.34995 3.41102 3.44886 3.46899 3.75765 3.91904 4.07417 4.20137 4.35018 4.45560 4.51561 4.84142 4.99329 5.12504 5.34692 5.67116 5.75573 6.26618 6.37886 6.47981 6.62269 6.78182 6.90141 6.99073 7.01427 7.20687 7.50598 7.63383 7.66467 7.84312 8.13435 8.31771 8.54904 8.78897 8.98078 9.23022 9.62330 11.09327 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.031582 B = 0.002216 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.377486 B =12632.357513 C =12784.525439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.255 3.745 3 H 0.064 0.936 4 C -0.522 4.522 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.568 5.568 13 C 0.076 3.924 14 C 0.508 3.492 15 O -0.522 6.522 16 C 0.499 3.501 17 O -0.543 6.543 18 N -0.636 5.636 19 C 0.483 3.517 20 C -0.282 4.282 21 C 0.137 3.863 22 N -0.392 5.392 23 C 0.090 3.910 24 C 0.242 3.758 25 F -0.196 7.196 26 F -0.193 7.193 27 N -0.473 5.473 28 H 0.452 0.548 29 H 0.094 0.906 30 H 0.012 0.988 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.039 0.961 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.198 0.802 37 H 0.199 0.801 38 H 0.119 0.881 39 H 0.140 0.860 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.476 -9.413 -27.639 31.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.155 3.845 3 H 0.082 0.918 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.300 5.300 13 C -0.067 4.067 14 C 0.289 3.711 15 O -0.398 6.398 16 C 0.282 3.718 17 O -0.423 6.423 18 N -0.394 5.394 19 C 0.228 3.772 20 C -0.313 4.313 21 C 0.003 3.997 22 N -0.185 5.185 23 C -0.033 4.033 24 C 0.187 3.813 25 F -0.177 7.177 26 F -0.175 7.175 27 N -0.201 5.201 28 H 0.301 0.699 29 H 0.112 0.888 30 H 0.031 0.969 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.214 0.786 37 H 0.216 0.784 38 H 0.138 0.862 39 H 0.157 0.843 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.644 -8.341 -27.410 31.317 hybrid contribution 0.342 -0.553 0.563 0.860 sum 12.986 -8.894 -26.847 31.121 Atomic orbital electron populations 1.22070 0.97943 0.99527 1.00794 1.19043 0.91114 0.94602 0.79714 0.91808 1.21336 1.31637 1.12934 0.90173 0.92115 1.24893 0.95046 0.95022 0.98905 1.69890 1.36510 1.22648 1.23633 0.86473 0.79190 0.79246 0.82349 1.20640 1.19939 1.21168 1.48195 1.46964 1.12459 1.22418 1.22063 1.01034 0.82467 1.01149 1.19393 0.81000 0.87185 0.83502 1.90668 1.58997 1.15313 1.74840 1.21224 0.79987 0.84849 0.85722 1.90482 1.59958 1.19648 1.72166 1.69034 1.24310 1.37702 1.08309 1.19369 0.83146 0.88595 0.86128 1.23007 1.09451 0.98361 1.00481 1.22943 0.90275 0.90067 0.96442 1.45992 1.44390 1.06303 1.21791 1.22877 0.91261 1.08097 0.81047 1.22505 0.91177 0.83688 0.83960 1.93069 1.86927 1.42163 1.95522 1.93049 1.73835 1.96778 1.53793 1.44340 1.45177 1.09952 1.20637 0.69898 0.88777 0.96936 0.95042 0.92761 0.94209 0.89445 0.91201 0.78581 0.78420 0.86236 0.84257 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.97 37.16 0.33 -3.42 16 2 C 0.26 7.12 2.63 -69.08 -0.18 6.94 16 3 H 0.06 2.02 6.90 -51.93 -0.36 1.66 16 4 C -0.52 -15.02 7.95 -34.44 -0.27 -15.29 16 5 H 0.06 1.73 7.44 -52.49 -0.39 1.34 16 6 C 0.06 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -26.13 11.32 55.43 0.63 -25.50 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 N -0.57 -14.20 2.75 -175.85 -0.48 -14.68 16 13 C 0.08 1.61 8.48 59.84 0.51 2.11 16 14 C 0.51 12.79 7.73 -11.69 -0.09 12.70 16 15 O -0.52 -14.72 16.25 5.46 0.09 -14.63 16 16 C 0.50 10.64 7.66 -12.40 -0.09 10.54 16 17 O -0.54 -10.63 10.05 5.15 0.05 -10.58 16 18 N -0.64 -12.10 10.34 -11.99 -0.12 -12.23 16 19 C 0.48 6.53 8.07 -155.17 -1.25 5.27 16 20 C -0.28 -2.96 9.52 -39.64 -0.38 -3.34 16 21 C 0.14 0.64 11.46 -16.65 -0.19 0.45 16 22 N -0.39 -1.77 3.63 -61.04 -0.22 -1.99 16 23 C 0.09 0.05 6.63 -4.05 -0.03 0.03 16 24 C 0.24 0.53 5.55 37.15 0.21 0.74 16 25 F -0.20 -1.23 17.32 2.25 0.04 -1.19 16 26 F -0.19 -0.73 17.34 2.25 0.04 -0.69 16 27 N -0.47 -4.05 7.37 31.31 0.23 -3.82 16 28 H 0.45 3.20 8.96 -182.55 -1.64 1.57 16 29 H 0.09 2.61 6.07 -51.93 -0.32 2.29 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.03 0.75 7.67 -51.93 -0.40 0.36 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.76 5.35 -51.94 -0.28 1.49 16 35 H 0.07 1.48 7.12 -51.93 -0.37 1.11 16 36 H 0.20 2.42 5.77 -52.49 -0.30 2.12 16 37 H 0.20 -0.10 8.06 -52.49 -0.42 -0.52 16 38 H 0.12 0.00 8.14 -51.93 -0.42 -0.42 16 39 H 0.14 -0.38 8.14 -51.93 -0.42 -0.80 16 40 H 0.12 0.00 8.14 -51.93 -0.42 -0.42 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -40.02 349.52 -6.76 -46.78 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.72 Total: -2.07 kcal Atomic # 6 Polarization: 19.98 SS G_CDS: -1.54 Total: 18.45 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.03 Total: -58.22 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: 0.14 Total: -25.21 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.08 Total: -1.88 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -40.02 -6.76 -46.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439405413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.073 kcal (2) G-P(sol) polarization free energy of solvation -40.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds