Wall clock time and date at job start Tue Mar 31 2020 05:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47325 * 2 1 4 4 N 1.46502 * 109.46932 * 120.00189 * 2 1 3 5 5 S 1.65599 * 119.99706 * 264.99787 * 4 2 1 6 6 O 1.42097 * 106.40251 * 178.53814 * 5 4 2 7 7 O 1.42099 * 106.40575 * 311.46429 * 5 4 2 8 8 C 1.76199 * 107.21885 * 65.00270 * 5 4 2 9 9 C 1.39872 * 126.04279 * 90.02100 * 8 5 4 10 10 N 1.30833 * 108.20394 * 179.97438 * 9 8 5 11 11 N 1.40088 * 108.20586 * 0.02562 * 10 9 8 12 12 C 1.46500 * 126.03606 * 179.97438 * 11 10 9 13 13 C 1.34944 * 107.92256 * 359.75510 * 11 10 9 14 14 C 1.50699 * 109.47271 * 239.99897 * 2 1 3 15 15 O 1.21280 * 120.00312 * 240.00093 * 14 2 1 16 16 N 1.34784 * 120.00292 * 60.00250 * 14 2 1 17 17 C 1.46497 * 120.00075 * 180.02562 * 16 14 2 18 18 H 1.08996 * 109.47049 * 324.99133 * 17 16 14 19 19 C 1.52997 * 109.47188 * 85.00024 * 17 16 14 20 20 C 1.50706 * 109.46582 * 204.99875 * 17 16 14 21 21 H 1.07999 * 120.00196 * 359.97438 * 20 17 16 22 22 C 1.37879 * 119.99394 * 179.97438 * 20 17 16 23 23 N 1.31514 * 120.00338 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99424 * 180.02562 * 22 20 17 25 25 H 1.48501 * 109.47474 * 90.00322 * 24 22 20 26 26 H 1.48510 * 109.47116 * 210.00055 * 24 22 20 27 27 H 1.48498 * 109.47278 * 329.99887 * 24 22 20 28 28 H 1.08988 * 109.47489 * 300.00269 * 1 2 3 29 29 H 1.09002 * 109.46954 * 60.00062 * 1 2 3 30 30 H 1.08999 * 109.47023 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00461 * 85.00147 * 4 2 1 32 32 H 1.07997 * 125.89409 * 359.95878 * 9 8 5 33 33 H 1.09002 * 109.46860 * 90.02338 * 12 11 10 34 34 H 1.08993 * 109.47084 * 210.01948 * 12 11 10 35 35 H 1.08994 * 109.47653 * 330.02711 * 12 11 10 36 36 H 1.08000 * 126.12609 * 180.24227 * 13 11 10 37 37 H 0.96996 * 119.99132 * 359.97438 * 16 14 2 38 38 H 1.09002 * 109.47153 * 299.99573 * 19 17 16 39 39 H 1.09001 * 109.46832 * 179.97438 * 19 17 16 40 40 H 1.09004 * 109.47261 * 59.99745 * 19 17 16 41 41 H 0.96996 * 119.99730 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 16 2.4121 0.1771 2.5505 6 8 2.8122 -0.7698 3.5315 7 8 3.2435 1.2443 2.1156 8 6 0.9274 0.9147 3.1474 9 6 0.0390 0.3480 4.0672 10 7 -0.9410 1.1925 4.2624 11 7 -0.7073 2.3247 3.4713 12 6 -1.5629 3.5111 3.3903 13 6 0.4478 2.1316 2.8008 14 6 2.0323 -0.7104 -1.2304 15 8 2.7296 -1.6965 -1.1192 16 7 1.7068 -0.2500 -2.4546 17 6 2.1947 -0.9410 -3.6507 18 1 3.1938 -1.3334 -3.4614 19 6 1.2502 -2.0945 -3.9943 20 6 2.2457 0.0273 -4.8044 21 1 1.9443 1.0545 -4.6611 22 6 2.6770 -0.3982 -6.0429 23 7 3.0435 -1.6491 -6.2176 24 14 2.7408 0.8021 -7.4728 25 1 4.0728 1.4577 -7.5098 26 1 2.5143 0.0695 -8.7446 27 1 1.6862 1.8333 -7.3009 28 1 -0.3634 0.5138 0.8898 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.1109 -1.6562 1.1949 32 1 0.1439 -0.6196 4.5353 33 1 -1.2505 4.2364 4.1416 34 1 -1.4758 3.9549 2.3986 35 1 -2.5991 3.2249 3.5706 36 1 0.9061 2.8234 2.1096 37 1 1.1489 0.5385 -2.5436 38 1 1.2133 -2.7948 -3.1599 39 1 1.6130 -2.6083 -4.8845 40 1 0.2510 -1.7019 -4.1836 41 1 3.3466 -1.9485 -7.0890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446098120.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:56 Heat of formation + Delta-G solvation = -33.423393 kcal Electronic energy + Delta-G solvation = -26505.481412 eV Core-core repulsion = 22549.530807 eV Total energy + Delta-G solvation = -3955.950605 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.65240 -39.30901 -37.18130 -35.81708 -35.58178 -34.65349 -33.82706 -32.49380 -30.89064 -30.17584 -28.49967 -27.46510 -25.29459 -24.18612 -22.31203 -21.70824 -21.13155 -19.62128 -19.42823 -18.34157 -18.01629 -17.02840 -16.10231 -16.00566 -15.98667 -15.47836 -15.24046 -14.89211 -14.70150 -14.61158 -13.90591 -13.60558 -13.40069 -13.23805 -13.17162 -13.01199 -12.46234 -12.43707 -12.13562 -12.03766 -11.92613 -11.89983 -11.67773 -11.63947 -11.11013 -11.00554 -10.94467 -10.78601 -10.34586 -10.27014 -10.00812 -9.84689 -9.58788 -9.10250 -8.98124 -8.58272 -7.99109 -6.15342 -4.24947 0.41586 1.17408 1.94783 1.99152 3.07181 3.22521 3.24417 3.29699 3.30815 3.79247 3.87924 3.97518 4.21407 4.33358 4.44026 4.60467 4.68016 4.86097 4.88799 5.01498 5.08794 5.11140 5.17373 5.23500 5.38878 5.59573 5.96618 6.00175 6.04213 6.32393 6.77964 6.90986 7.02438 7.03257 7.10446 7.38823 7.50360 7.65063 7.87095 8.11118 8.57729 8.72904 9.02067 9.42520 10.90623 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.002982 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.828007 B = 9386.140613 C =10064.674197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.128 3.872 3 H 0.111 0.889 4 N -1.096 6.096 5 S 2.731 3.269 6 O -0.959 6.959 7 O -0.962 6.962 8 C -0.815 4.815 9 C 0.137 3.863 10 N -0.294 5.294 11 N -0.362 5.362 12 C 0.090 3.910 13 C 0.177 3.823 14 C 0.502 3.498 15 O -0.543 6.543 16 N -0.704 5.704 17 C 0.264 3.736 18 H 0.050 0.950 19 C -0.146 4.146 20 C -0.535 4.535 21 H 0.062 0.938 22 C 0.066 3.934 23 N -0.883 5.883 24 Si 0.902 3.098 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.427 0.573 32 H 0.199 0.801 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.194 0.806 37 H 0.389 0.611 38 H 0.015 0.985 39 H 0.090 0.910 40 H 0.026 0.974 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.654 9.685 17.561 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.017 3.983 3 H 0.129 0.871 4 N -0.857 5.857 5 S 2.817 3.183 6 O -0.949 6.949 7 O -0.952 6.952 8 C -0.913 4.913 9 C -0.053 4.053 10 N -0.113 5.113 11 N -0.139 5.139 12 C -0.051 4.051 13 C 0.023 3.977 14 C 0.284 3.716 15 O -0.421 6.421 16 N -0.352 5.352 17 C 0.162 3.838 18 H 0.068 0.932 19 C -0.205 4.205 20 C -0.573 4.573 21 H 0.080 0.920 22 C -0.137 4.137 23 N -0.520 5.520 24 Si 0.730 3.270 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.199 1.199 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.264 0.736 32 H 0.215 0.785 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.211 0.789 37 H 0.222 0.778 38 H 0.034 0.966 39 H 0.109 0.891 40 H 0.045 0.955 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.534 9.500 18.462 23.282 hybrid contribution -0.278 0.675 -1.338 1.524 sum -10.812 10.175 17.124 22.664 Atomic orbital electron populations 1.22284 0.93531 1.03949 1.02807 1.20704 0.94965 0.97220 0.85433 0.87121 1.55248 1.83799 1.20815 1.25806 1.00743 0.72594 0.72997 0.71979 1.93574 1.80742 1.61954 1.58662 1.93581 1.63377 1.56564 1.81649 1.31746 1.29212 1.08671 1.21680 1.23554 0.89228 0.98924 0.93554 1.77459 1.23587 0.94522 1.15761 1.49113 1.17563 1.15138 1.32122 1.22090 0.95372 0.83484 1.04118 1.22532 0.85994 0.95560 0.93574 1.20250 0.81298 0.85328 0.84733 1.90662 1.38395 1.26623 1.86436 1.46505 1.51535 1.30957 1.06215 1.18781 0.94468 0.90562 0.79952 0.93216 1.22076 0.98438 0.98672 1.01331 1.21204 1.45915 0.96080 0.94139 0.92012 1.24890 0.94727 0.95369 0.98722 1.69898 1.43042 1.15061 1.24003 0.86441 0.78477 0.80708 0.81393 1.20524 1.21107 1.19867 0.91907 0.90568 0.91064 0.73608 0.78468 0.89977 0.88594 0.88621 0.78940 0.77834 0.96628 0.89122 0.95469 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 9.41 37.16 0.35 -1.31 16 2 C 0.13 1.65 3.32 -69.08 -0.23 1.42 16 3 H 0.11 1.22 7.50 -51.93 -0.39 0.83 16 4 N -1.10 -13.86 5.26 -5.88 -0.03 -13.89 16 5 S 2.73 33.57 5.86 -107.50 -0.63 32.94 16 6 O -0.96 -14.14 17.87 -57.17 -1.02 -15.16 16 7 O -0.96 -14.22 17.18 -57.17 -0.98 -15.21 16 8 C -0.81 -8.10 5.25 -40.01 -0.21 -8.31 16 9 C 0.14 1.36 11.81 -17.37 -0.21 1.16 16 10 N -0.29 -3.06 12.58 30.62 0.39 -2.67 16 11 N -0.36 -2.89 4.01 -68.17 -0.27 -3.17 16 12 C 0.09 0.33 11.47 59.85 0.69 1.02 16 13 C 0.18 1.43 10.34 -17.23 -0.18 1.25 16 14 C 0.50 9.23 7.18 -10.98 -0.08 9.15 16 15 O -0.54 -12.21 15.65 5.56 0.09 -12.12 16 16 N -0.70 -13.54 4.96 -54.93 -0.27 -13.81 16 17 C 0.26 6.45 2.56 -69.08 -0.18 6.28 16 18 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 19 C -0.15 -3.50 9.26 37.16 0.34 -3.16 16 20 C -0.53 -13.69 8.73 -34.44 -0.30 -13.99 16 21 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 22 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 23 N -0.88 -24.40 11.32 55.43 0.63 -23.78 16 24 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 28 H 0.06 0.52 6.22 -51.94 -0.32 0.19 16 29 H 0.08 0.68 7.56 -51.93 -0.39 0.29 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.43 5.50 8.21 -34.47 -0.28 5.22 16 32 H 0.20 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.19 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.39 6.21 7.96 -40.82 -0.32 5.89 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 362.32 15.07 5.46 5.46 Total: -1.00 -36.70 362.32 -7.11 -43.81 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.34 Total: 7.32 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -0.09 Total: -4.84 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.44 Total: -57.32 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -1.92 Total: -42.49 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 33.57 SS G_CDS: -0.63 Total: 32.94 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.70 -7.11 -43.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446098120.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.383 kcal (2) G-P(sol) polarization free energy of solvation -36.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds