Wall clock time and date at job start Tue Mar 31 2020 05:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47325 * 2 1 4 4 N 1.46502 * 109.46932 * 120.00189 * 2 1 3 5 5 S 1.65599 * 119.99706 * 264.99787 * 4 2 1 6 6 O 1.42097 * 106.40251 * 178.53814 * 5 4 2 7 7 O 1.42099 * 106.40575 * 311.46429 * 5 4 2 8 8 C 1.76199 * 107.21885 * 65.00270 * 5 4 2 9 9 C 1.39872 * 126.04279 * 90.02100 * 8 5 4 10 10 N 1.30833 * 108.20394 * 179.97438 * 9 8 5 11 11 N 1.40088 * 108.20586 * 0.02562 * 10 9 8 12 12 C 1.46500 * 126.03606 * 179.97438 * 11 10 9 13 13 C 1.34944 * 107.92256 * 359.75510 * 11 10 9 14 14 C 1.50699 * 109.47271 * 239.99897 * 2 1 3 15 15 O 1.21280 * 120.00312 * 240.00093 * 14 2 1 16 16 N 1.34784 * 120.00292 * 60.00250 * 14 2 1 17 17 C 1.46497 * 120.00075 * 180.02562 * 16 14 2 18 18 H 1.08996 * 109.47049 * 324.99133 * 17 16 14 19 19 C 1.52997 * 109.47188 * 85.00024 * 17 16 14 20 20 C 1.50706 * 109.46582 * 204.99875 * 17 16 14 21 21 H 1.07999 * 120.00196 * 359.97438 * 20 17 16 22 22 C 1.37879 * 119.99394 * 179.97438 * 20 17 16 23 23 N 1.31514 * 120.00338 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99424 * 180.02562 * 22 20 17 25 25 H 1.48501 * 109.47474 * 90.00322 * 24 22 20 26 26 H 1.48510 * 109.47116 * 210.00055 * 24 22 20 27 27 H 1.48498 * 109.47278 * 329.99887 * 24 22 20 28 28 H 1.08988 * 109.47489 * 300.00269 * 1 2 3 29 29 H 1.09002 * 109.46954 * 60.00062 * 1 2 3 30 30 H 1.08999 * 109.47023 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00461 * 85.00147 * 4 2 1 32 32 H 1.07997 * 125.89409 * 359.95878 * 9 8 5 33 33 H 1.09002 * 109.46860 * 90.02338 * 12 11 10 34 34 H 1.08993 * 109.47084 * 210.01948 * 12 11 10 35 35 H 1.08994 * 109.47653 * 330.02711 * 12 11 10 36 36 H 1.08000 * 126.12609 * 180.24227 * 13 11 10 37 37 H 0.96996 * 119.99132 * 359.97438 * 16 14 2 38 38 H 1.09002 * 109.47153 * 299.99573 * 19 17 16 39 39 H 1.09001 * 109.46832 * 179.97438 * 19 17 16 40 40 H 1.09004 * 109.47261 * 59.99745 * 19 17 16 41 41 H 0.96996 * 119.99730 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 16 2.4121 0.1771 2.5505 6 8 2.8122 -0.7698 3.5315 7 8 3.2435 1.2443 2.1156 8 6 0.9274 0.9147 3.1474 9 6 0.0390 0.3480 4.0672 10 7 -0.9410 1.1925 4.2624 11 7 -0.7073 2.3247 3.4713 12 6 -1.5629 3.5111 3.3903 13 6 0.4478 2.1316 2.8008 14 6 2.0323 -0.7104 -1.2304 15 8 2.7296 -1.6965 -1.1192 16 7 1.7068 -0.2500 -2.4546 17 6 2.1947 -0.9410 -3.6507 18 1 3.1938 -1.3334 -3.4614 19 6 1.2502 -2.0945 -3.9943 20 6 2.2457 0.0273 -4.8044 21 1 1.9443 1.0545 -4.6611 22 6 2.6770 -0.3982 -6.0429 23 7 3.0435 -1.6491 -6.2176 24 14 2.7408 0.8021 -7.4728 25 1 4.0728 1.4577 -7.5098 26 1 2.5143 0.0695 -8.7446 27 1 1.6862 1.8333 -7.3009 28 1 -0.3634 0.5138 0.8898 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.1109 -1.6562 1.1949 32 1 0.1439 -0.6196 4.5353 33 1 -1.2505 4.2364 4.1416 34 1 -1.4758 3.9549 2.3986 35 1 -2.5991 3.2249 3.5706 36 1 0.9061 2.8234 2.1096 37 1 1.1489 0.5385 -2.5436 38 1 1.2133 -2.7948 -3.1599 39 1 1.6130 -2.6083 -4.8845 40 1 0.2510 -1.7019 -4.1836 41 1 3.3466 -1.9485 -7.0890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000446098120.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:55 Heat of formation + Delta-G solvation = -64.461315 kcal Electronic energy + Delta-G solvation = -26506.827318 eV Core-core repulsion = 22549.530807 eV Total energy + Delta-G solvation = -3957.296511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.29698 -40.79671 -38.26444 -37.01588 -36.89340 -36.19129 -34.34729 -34.32695 -31.64816 -31.47276 -29.97017 -27.91307 -27.29881 -25.38748 -23.03506 -22.83402 -22.29034 -21.08888 -20.49126 -19.40343 -19.06093 -18.32429 -17.54392 -17.09842 -16.78500 -16.72410 -16.49923 -16.06562 -15.98481 -15.45777 -15.33164 -14.69454 -14.31003 -14.26700 -14.11373 -13.80312 -13.63951 -13.59343 -13.35475 -13.21701 -13.12454 -13.00577 -12.87511 -12.84309 -12.72939 -12.66341 -12.56346 -12.22135 -12.09556 -11.73549 -11.07028 -10.94556 -10.65536 -10.59287 -10.43209 -10.19862 -9.72622 -8.14203 -6.31412 -0.54759 0.54878 1.21632 1.48167 1.48892 1.49235 1.59082 1.79038 2.11526 2.39030 2.62765 2.86471 3.16818 3.19506 3.70351 3.74122 3.81939 4.01078 4.14219 4.14810 4.35197 4.42420 4.52510 4.59991 4.72369 4.75996 4.82779 4.96244 5.04017 5.14485 5.25474 5.31318 5.47799 5.63896 5.73065 5.81782 5.94161 5.98128 6.13968 6.37469 6.76991 6.97424 7.35897 7.56714 8.91975 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.002982 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.828007 B = 9386.140613 C =10064.674197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.137 0.863 4 N -1.101 6.101 5 S 2.750 3.250 6 O -0.989 6.989 7 O -0.988 6.988 8 C -0.823 4.823 9 C 0.129 3.871 10 N -0.320 5.320 11 N -0.358 5.358 12 C 0.078 3.922 13 C 0.185 3.815 14 C 0.495 3.505 15 O -0.591 6.591 16 N -0.698 5.698 17 C 0.269 3.731 18 H -0.003 1.003 19 C -0.133 4.133 20 C -0.544 4.544 21 H 0.078 0.922 22 C 0.013 3.987 23 N -0.919 5.919 24 Si 0.971 3.029 25 H -0.280 1.280 26 H -0.287 1.287 27 H -0.256 1.256 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.424 0.576 32 H 0.207 0.793 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.098 0.902 36 H 0.227 0.773 37 H 0.408 0.592 38 H 0.012 0.988 39 H 0.063 0.937 40 H 0.043 0.957 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.674 12.761 17.708 25.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.154 0.846 4 N -0.861 5.861 5 S 2.840 3.160 6 O -0.980 6.980 7 O -0.978 6.978 8 C -0.925 4.925 9 C -0.061 4.061 10 N -0.139 5.139 11 N -0.134 5.134 12 C -0.061 4.061 13 C 0.029 3.971 14 C 0.280 3.720 15 O -0.472 6.472 16 N -0.348 5.348 17 C 0.166 3.834 18 H 0.015 0.985 19 C -0.192 4.192 20 C -0.583 4.583 21 H 0.096 0.904 22 C -0.187 4.187 23 N -0.557 5.557 24 Si 0.796 3.204 25 H -0.206 1.206 26 H -0.213 1.213 27 H -0.180 1.180 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.260 0.740 32 H 0.224 0.776 33 H 0.113 0.887 34 H 0.145 0.855 35 H 0.117 0.883 36 H 0.243 0.757 37 H 0.244 0.756 38 H 0.032 0.968 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.575 12.610 18.627 25.771 hybrid contribution 0.319 -0.249 -1.309 1.370 sum -12.256 12.361 17.318 24.555 Atomic orbital electron populations 1.22282 0.90708 1.04087 1.04806 1.20770 0.96923 0.97270 0.82336 0.84568 1.55274 1.84095 1.20728 1.25993 0.99805 0.72872 0.72097 0.71207 1.93530 1.81928 1.63056 1.59473 1.93540 1.65146 1.57115 1.82031 1.31243 1.28482 1.09837 1.22978 1.23804 0.89151 0.99507 0.93604 1.77422 1.24057 0.95571 1.16890 1.49433 1.17744 1.15299 1.30909 1.22512 0.94896 0.82218 1.06451 1.23051 0.85640 0.95119 0.93255 1.21240 0.80081 0.84794 0.85867 1.90643 1.40364 1.28933 1.87224 1.46195 1.51847 1.31404 1.05313 1.18351 0.92207 0.91031 0.81837 0.98520 1.21886 0.98971 0.98375 0.99951 1.21578 1.45428 0.96870 0.94375 0.90383 1.25805 0.94374 0.96917 1.01623 1.70060 1.44075 1.17084 1.24529 0.85357 0.78668 0.78655 0.77712 1.20635 1.21317 1.17958 0.89530 0.88841 0.91970 0.73953 0.77626 0.88745 0.85535 0.88346 0.75665 0.75552 0.96849 0.91796 0.93761 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.41 71.98 0.68 -2.02 16 2 C 0.14 3.30 3.32 44.24 0.15 3.45 16 3 H 0.14 2.58 7.50 -2.39 -0.02 2.57 16 4 N -1.10 -27.16 5.26 -172.53 -0.91 -28.06 16 5 S 2.75 65.37 5.86 -56.49 -0.33 65.04 16 6 O -0.99 -29.40 17.87 -128.00 -2.29 -31.68 16 7 O -0.99 -28.05 17.18 -128.00 -2.20 -30.25 16 8 C -0.82 -14.68 5.25 21.99 0.12 -14.57 16 9 C 0.13 2.37 11.81 85.24 1.01 3.38 16 10 N -0.32 -6.00 12.58 -57.03 -0.72 -6.71 16 11 N -0.36 -4.53 4.01 -369.58 -1.48 -6.02 16 12 C 0.08 0.28 11.47 127.77 1.47 1.74 16 13 C 0.18 2.33 10.34 83.54 0.86 3.20 16 14 C 0.50 18.07 7.18 87.66 0.63 18.70 16 15 O -0.59 -27.41 15.65 -3.03 -0.05 -27.45 16 16 N -0.70 -26.29 4.96 -446.09 -2.21 -28.51 16 17 C 0.27 13.37 2.56 44.25 0.11 13.49 16 18 H 0.00 -0.19 7.58 -2.39 -0.02 -0.20 16 19 C -0.13 -6.46 9.26 71.98 0.67 -5.80 16 20 C -0.54 -27.56 8.73 25.60 0.22 -27.33 16 21 H 0.08 3.61 7.74 -2.91 -0.02 3.58 16 22 C 0.01 0.66 5.30 84.66 0.45 1.11 16 23 N -0.92 -51.93 11.32 21.45 0.24 -51.69 16 24 Si 0.97 40.75 29.54 68.60 2.03 42.77 16 25 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 28 H 0.09 1.09 6.22 -2.39 -0.01 1.08 16 29 H 0.09 1.28 7.56 -2.39 -0.02 1.27 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.42 11.13 8.21 -96.75 -0.79 10.34 16 32 H 0.21 3.11 8.06 -2.91 -0.02 3.08 16 33 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.13 -0.30 8.14 -2.39 -0.02 -0.32 16 35 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.23 1.18 8.06 -2.91 -0.02 1.15 16 37 H 0.41 12.07 7.96 -92.71 -0.74 11.33 16 38 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 40 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -81.95 362.32 -2.01 -83.96 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -0.45 Total: 23.26 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 6.36 Total: -4.66 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -5.08 Total: -120.99 kcal Atomic # 8 Polarization: -84.85 SS G_CDS: -4.53 Total: -89.38 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 16 Polarization: 65.37 SS G_CDS: -0.33 Total: 65.04 kcal Total: -81.95 -2.01 -83.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446098120.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.501 kcal (2) G-P(sol) polarization free energy of solvation -81.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds