Wall clock time and date at job start Tue Mar 31 2020 05:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47177 * 2 1 4 4 C 1.46492 * 120.00225 * 265.00974 * 3 2 1 5 5 C 1.50697 * 109.47714 * 263.12632 * 4 3 2 6 6 H 1.08005 * 119.99522 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00537 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00001 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99575 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47291 * 90.00231 * 9 7 5 11 11 H 1.48499 * 109.47007 * 210.00269 * 9 7 5 12 12 H 1.48499 * 109.47470 * 330.00097 * 9 7 5 13 13 C 1.34783 * 119.99660 * 85.01731 * 3 2 1 14 14 O 1.21378 * 120.00026 * 4.00077 * 13 3 2 15 15 C 1.49241 * 119.99692 * 184.27947 * 13 3 2 16 16 O 1.21749 * 120.00089 * 354.40459 * 15 13 3 17 17 N 1.33174 * 119.99756 * 174.40382 * 15 13 3 18 18 C 1.33376 * 120.00026 * 180.02562 * 17 15 13 19 19 C 1.40859 * 126.34957 * 0.02562 * 18 17 15 20 20 C 1.35302 * 108.22366 * 179.97438 * 19 18 17 21 21 N 1.36227 * 108.88203 * 0.02562 * 20 19 18 22 22 C 1.46497 * 125.86121 * 179.97438 * 21 20 19 23 23 C 1.53001 * 109.47028 * 85.02957 * 22 21 20 24 24 F 1.39893 * 109.47323 * 174.99572 * 23 22 21 25 25 F 1.39904 * 109.47263 * 294.99921 * 23 22 21 26 26 N 1.37275 * 126.35516 * 179.71498 * 18 17 15 27 27 H 0.96999 * 126.33564 * 0.02562 * 26 18 17 28 28 H 1.09003 * 109.47365 * 59.99551 * 1 2 3 29 29 H 1.08995 * 109.47173 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47213 * 299.99775 * 1 2 3 31 31 H 1.09000 * 109.47213 * 240.00225 * 2 1 3 32 32 H 1.09003 * 109.47365 * 120.00449 * 2 1 3 33 33 H 1.09002 * 109.47207 * 23.12908 * 4 3 2 34 34 H 1.09004 * 109.46917 * 143.12325 * 4 3 2 35 35 H 0.97004 * 119.99652 * 180.02562 * 8 7 5 36 36 H 1.07991 * 125.89143 * 359.95031 * 19 18 17 37 37 H 1.08005 * 125.56509 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.46864 * 205.02607 * 22 21 20 39 39 H 1.08996 * 109.47223 * 325.02763 * 22 21 20 40 40 H 1.09003 * 109.47118 * 54.99479 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3665 2.0350 -1.2638 5 6 3.8529 1.9322 -1.4899 6 1 4.4760 1.4303 -0.7644 7 6 4.4176 2.4796 -2.6224 8 7 5.7146 2.3894 -2.8198 9 14 3.3400 3.3483 -3.8768 10 1 3.2408 4.7890 -3.5311 11 1 3.9384 3.2035 -5.2281 12 1 1.9840 2.7428 -3.8684 13 6 2.1473 2.0503 1.1629 14 8 1.9287 1.4862 2.2151 15 6 2.5530 3.4865 1.1563 16 8 2.8660 4.0259 0.1107 17 7 2.5727 4.1780 2.2943 18 6 2.9348 5.4617 2.2884 19 6 3.3194 6.2155 1.1623 20 6 3.6093 7.4716 1.5730 21 7 3.4247 7.5486 2.9205 22 6 3.6328 8.7390 3.7487 23 6 2.3703 9.6031 3.7260 24 9 2.5263 10.6798 4.6053 25 9 2.1590 10.0861 2.4301 26 7 2.9960 6.2949 3.3776 27 1 2.7842 6.0590 4.2943 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.8397 1.5459 -2.0832 34 1 2.0772 3.0851 -1.2214 35 1 6.1119 2.7749 -3.6164 36 1 3.3740 5.8532 0.1465 37 1 3.9349 8.2812 0.9365 38 1 3.8471 8.4356 4.7735 39 1 4.4726 9.3123 3.3563 40 1 1.5139 9.0033 4.0342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446879097.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:14 Heat of formation + Delta-G solvation = -26.630779 kcal Electronic energy + Delta-G solvation = -28372.635490 eV Core-core repulsion = 23863.139048 eV Total energy + Delta-G solvation = -4509.496442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.66791 -47.67467 -41.61810 -39.56289 -37.64254 -35.32362 -34.69614 -32.45146 -32.34938 -31.75930 -30.43560 -28.42351 -27.38490 -25.08329 -23.76617 -22.57938 -22.27953 -22.07647 -20.76463 -18.94977 -18.23141 -17.99785 -17.60373 -16.88407 -16.81023 -16.23722 -15.96052 -15.46990 -15.19883 -15.05837 -14.63249 -14.55168 -14.28889 -14.01636 -13.95908 -13.73301 -13.52933 -13.31699 -13.08169 -12.97658 -12.76214 -12.30658 -12.03076 -11.89489 -11.58722 -11.53520 -10.86492 -10.68703 -10.55605 -10.45616 -10.10134 -10.04033 -9.72932 -9.37215 -9.04285 -8.47471 -8.05180 -7.67306 -7.47625 -5.92674 -3.87685 0.84715 0.90378 2.26723 2.87576 3.14783 3.27196 3.40561 3.45125 3.47040 3.48248 3.58020 3.78282 3.99721 4.35913 4.42335 4.54657 4.54883 4.63090 4.94128 5.21873 5.33593 5.42009 5.64512 5.82895 5.90656 5.92354 6.07844 6.28337 6.42398 6.59571 6.66466 6.73193 6.91461 7.09485 7.26113 7.51969 7.75743 7.92283 8.24402 8.62297 8.84427 9.10142 9.23771 9.69246 11.21196 Molecular weight = 330.13amu Principal moments of inertia in cm(-1) A = 0.013259 B = 0.003412 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.193437 B = 8204.787464 C = 9566.026565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.113 3.887 3 N -0.570 5.570 4 C 0.193 3.807 5 C -0.508 4.508 6 H 0.070 0.930 7 C 0.075 3.925 8 N -0.904 5.904 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.268 1.268 13 C 0.527 3.473 14 O -0.540 6.540 15 C 0.485 3.515 16 O -0.487 6.487 17 N -0.640 5.640 18 C 0.483 3.517 19 C -0.280 4.280 20 C 0.145 3.855 21 N -0.399 5.399 22 C 0.094 3.906 23 C 0.243 3.757 24 F -0.194 7.194 25 F -0.194 7.194 26 N -0.483 5.483 27 H 0.448 0.552 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.023 0.977 34 H 0.068 0.932 35 H 0.261 0.739 36 H 0.199 0.801 37 H 0.196 0.804 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.583 16.635 13.509 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.010 4.010 3 N -0.302 5.302 4 C 0.073 3.927 5 C -0.547 4.547 6 H 0.088 0.912 7 C -0.126 4.126 8 N -0.543 5.543 9 Si 0.705 3.295 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.193 1.193 13 C 0.310 3.690 14 O -0.418 6.418 15 C 0.266 3.734 16 O -0.361 6.361 17 N -0.398 5.398 18 C 0.227 3.773 19 C -0.311 4.311 20 C 0.012 3.988 21 N -0.192 5.192 22 C -0.030 4.030 23 C 0.187 3.813 24 F -0.176 7.176 25 F -0.176 7.176 26 N -0.212 5.212 27 H 0.297 0.703 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.216 0.784 37 H 0.213 0.787 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.612 16.326 14.139 22.587 hybrid contribution -0.195 0.859 -0.882 1.246 sum -6.807 17.186 13.257 22.747 Atomic orbital electron populations 1.22129 0.96710 1.01417 1.01992 1.21347 0.93385 0.83267 1.02986 1.47946 1.61465 1.12987 1.07844 1.20399 0.97250 0.95165 0.79890 1.21218 0.90601 1.36031 1.06829 0.91182 1.24743 0.94687 0.95427 0.97709 1.69916 1.10267 1.46298 1.27862 0.86836 0.81073 0.81035 0.80577 1.19882 1.21666 1.19253 1.19475 0.78690 0.87105 0.83776 1.90603 1.50725 1.69367 1.31120 1.20709 0.78740 0.89566 0.84351 1.90682 1.40218 1.70344 1.34888 1.68913 1.36373 1.02495 1.31971 1.19261 0.84843 0.89076 0.84093 1.23074 1.12453 0.92602 1.02941 1.22926 0.94966 1.00031 0.80907 1.45931 1.65859 1.01081 1.06365 1.22784 0.97887 0.83270 0.99015 1.22455 1.00734 0.84221 0.73868 1.93037 1.96923 1.58762 1.68854 1.93053 1.96126 1.89580 1.38793 1.44198 1.67242 1.00014 1.09794 0.70336 0.92729 0.92134 0.92597 0.90014 0.90802 0.95900 0.91488 0.92922 0.78428 0.78696 0.85622 0.85247 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 10.20 37.16 0.38 -2.31 16 2 C 0.11 2.23 6.08 -4.05 -0.02 2.20 16 3 N -0.57 -13.43 2.49 -175.65 -0.44 -13.87 16 4 C 0.19 4.91 3.81 -5.20 -0.02 4.89 16 5 C -0.51 -14.92 8.92 -34.44 -0.31 -15.23 16 6 H 0.07 2.30 8.06 -52.48 -0.42 1.88 16 7 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 8 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 9 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 13 C 0.53 12.88 7.63 -11.68 -0.09 12.79 16 14 O -0.54 -13.64 16.55 5.47 0.09 -13.55 16 15 C 0.48 11.42 7.65 -12.39 -0.09 11.33 16 16 O -0.49 -11.95 9.31 5.14 0.05 -11.90 16 17 N -0.64 -13.07 10.33 -11.99 -0.12 -13.19 16 18 C 0.48 7.63 8.07 -155.18 -1.25 6.38 16 19 C -0.28 -4.14 9.52 -39.64 -0.38 -4.52 16 20 C 0.14 1.33 11.20 -16.65 -0.19 1.14 16 21 N -0.40 -2.81 3.64 -61.04 -0.22 -3.03 16 22 C 0.09 0.25 6.64 -4.04 -0.03 0.22 16 23 C 0.24 0.95 5.55 37.16 0.21 1.16 16 24 F -0.19 -1.02 17.34 2.25 0.04 -0.98 16 25 F -0.19 -1.32 17.07 2.25 0.04 -1.29 16 26 N -0.48 -4.71 7.37 31.31 0.23 -4.48 16 27 H 0.45 3.10 8.96 -182.55 -1.64 1.47 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.54 8.03 -51.93 -0.42 1.12 16 32 H 0.07 1.45 7.52 -51.93 -0.39 1.06 16 33 H 0.02 0.56 7.08 -51.93 -0.37 0.20 16 34 H 0.07 1.75 4.79 -51.93 -0.25 1.50 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.20 3.61 5.77 -52.49 -0.30 3.31 16 37 H 0.20 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.13 0.04 8.14 -51.93 -0.42 -0.38 16 39 H 0.13 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.12 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -40.25 352.44 -6.72 -46.97 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.91 Total: -0.03 kcal Atomic # 6 Polarization: 22.07 SS G_CDS: -1.89 Total: 20.18 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.22 Total: -62.01 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: 0.14 Total: -25.45 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.08 Total: -2.26 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -40.25 -6.72 -46.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446879097.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.338 kcal (2) G-P(sol) polarization free energy of solvation -40.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds