Wall clock time and date at job start Tue Mar 31 2020 06:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99946 * 2 1 4 4 H 1.48504 * 109.47534 * 270.00512 * 3 2 1 5 5 H 1.48504 * 109.47301 * 30.00278 * 3 2 1 6 6 H 1.48502 * 109.47201 * 150.00370 * 3 2 1 7 7 C 1.37876 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00015 * 174.17996 * 7 2 1 9 9 C 1.50697 * 119.99862 * 354.18450 * 7 2 1 10 10 C 1.52998 * 115.55093 * 84.82256 * 9 7 2 11 11 S 1.81399 * 109.47148 * 39.85643 * 10 9 7 12 12 O 1.42105 * 110.54128 * 67.21092 * 11 10 9 13 13 O 1.42096 * 110.54315 * 290.45957 * 11 10 9 14 14 N 1.65608 * 104.44900 * 178.83246 * 11 10 9 15 15 C 1.46501 * 119.99670 * 65.00095 * 14 11 10 16 16 H 1.08996 * 109.46989 * 334.99635 * 15 14 11 17 17 C 1.52998 * 109.46998 * 94.99906 * 15 14 11 18 18 C 1.53001 * 109.46797 * 60.00000 * 17 15 14 19 19 C 1.52998 * 109.47592 * 60.00120 * 18 17 15 20 20 C 1.52998 * 109.46951 * 299.99786 * 19 18 17 21 21 C 1.52998 * 109.46740 * 215.00032 * 15 14 11 22 22 H 1.09004 * 109.47052 * 180.02562 * 21 15 14 23 23 C 1.50706 * 109.47485 * 59.99989 * 21 15 14 24 24 N 1.34774 * 119.99861 * 179.97438 * 23 21 15 25 25 O 1.21279 * 119.99367 * 359.97438 * 23 21 15 26 26 C 1.52998 * 117.51501 * 230.52579 * 9 7 2 27 27 C 1.52999 * 60.00121 * 107.47881 * 26 9 7 28 28 H 0.97001 * 119.99942 * 5.02702 * 1 2 3 29 29 H 1.08998 * 109.47140 * 279.85154 * 10 9 7 30 30 H 1.09011 * 109.46812 * 159.85528 * 10 9 7 31 31 H 0.96999 * 119.99778 * 245.00107 * 14 11 10 32 32 H 1.08996 * 109.47297 * 299.99691 * 17 15 14 33 33 H 1.09006 * 109.46775 * 179.97438 * 17 15 14 34 34 H 1.09008 * 109.46677 * 179.97438 * 18 17 15 35 35 H 1.08996 * 109.47274 * 299.99305 * 18 17 15 36 36 H 1.08994 * 109.46964 * 59.99286 * 19 18 17 37 37 H 1.08999 * 109.47159 * 179.97438 * 19 18 17 38 38 H 1.08996 * 109.47297 * 180.02562 * 20 19 18 39 39 H 1.09004 * 109.47225 * 300.00248 * 20 19 18 40 40 H 0.97002 * 120.00379 * 0.02562 * 24 23 21 41 41 H 0.96999 * 119.99707 * 179.97438 * 24 23 21 42 42 H 1.09002 * 117.49892 * 214.96668 * 26 9 7 43 43 H 1.08998 * 117.50408 * 359.97438 * 26 9 7 44 44 H 1.08997 * 117.50195 * 252.50648 * 27 26 9 45 45 H 1.09000 * 117.49660 * 107.48824 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0804 -1.1963 -0.0954 9 6 1.2569 -2.4958 0.1311 10 6 0.7013 -3.0724 -1.1726 11 16 1.9100 -2.8320 -2.5037 12 8 3.0690 -3.6212 -2.2733 13 8 2.0158 -1.4550 -2.8383 14 7 1.2035 -3.5222 -3.8330 15 6 -0.0264 -2.9517 -4.3881 16 1 -0.5599 -2.4095 -3.6075 17 6 0.3252 -1.9920 -5.5266 18 6 1.0742 -2.7532 -6.6222 19 6 0.1872 -3.8782 -7.1593 20 6 -0.1644 -4.8379 -6.0208 21 6 -0.9134 -4.0768 -4.9250 22 1 -1.8283 -3.6523 -5.3384 23 6 -1.2597 -5.0221 -3.8036 24 7 -2.0378 -6.0960 -4.0436 25 8 -0.8381 -4.8164 -2.6852 26 6 1.7433 -3.4862 1.1910 27 6 0.4394 -2.7151 1.4057 28 1 -0.4850 0.8368 -0.0736 29 1 -0.2275 -2.5627 -1.4286 30 1 0.5080 -4.1377 -1.0453 31 1 1.6040 -4.3042 -4.2440 32 1 0.9571 -1.1905 -5.1441 33 1 -0.5899 -1.5678 -5.9399 34 1 1.3243 -2.0695 -7.4336 35 1 1.9893 -3.1776 -6.2092 36 1 -0.7278 -3.4537 -7.5722 37 1 0.7207 -4.4202 -7.9401 38 1 -0.7959 -5.6397 -6.4034 39 1 0.7507 -5.2624 -5.6077 40 1 -2.3747 -6.2607 -4.9382 41 1 -2.2604 -6.7047 -3.3219 42 1 1.6674 -4.5486 0.9596 43 1 2.6045 -3.1965 1.7931 44 1 0.4426 -1.9180 2.1491 45 1 -0.4943 -3.2703 1.3154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451282829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:55 Heat of formation + Delta-G solvation = -102.657938 kcal Electronic energy + Delta-G solvation = -28889.426940 eV Core-core repulsion = 25034.014443 eV Total energy + Delta-G solvation = -3855.412497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.34959 -37.83200 -36.50656 -35.83585 -34.65565 -34.00459 -33.03196 -31.87991 -30.92125 -29.13981 -27.86024 -25.27431 -23.82863 -22.63430 -21.02372 -20.68858 -19.84810 -19.24061 -18.20242 -17.72421 -16.75764 -16.60361 -16.19558 -15.57150 -15.03435 -14.83025 -14.69425 -14.51417 -14.18780 -14.13336 -13.80173 -13.51130 -12.85110 -12.71226 -12.62845 -12.43718 -12.23207 -11.83377 -11.60683 -11.38377 -10.95830 -10.93176 -10.87237 -10.80695 -10.76227 -10.66435 -10.58552 -10.38770 -10.12914 -10.07420 -9.86587 -9.82783 -9.71674 -9.47087 -8.94162 -8.69123 -8.36222 -7.89030 -5.99728 -4.12452 1.53186 2.66509 3.42085 3.44155 3.49263 3.52516 3.84331 4.43634 4.52923 4.58772 4.60746 4.94540 5.05402 5.11214 5.18633 5.24820 5.30083 5.32900 5.35526 5.45414 5.47270 5.62597 5.71563 5.79732 5.92693 5.95899 6.08848 6.15742 6.28581 6.33093 6.50155 6.52996 6.57604 6.65649 6.76287 6.86977 6.94481 7.16930 7.25387 7.38912 7.55971 7.56671 7.93415 8.29162 8.38579 8.93587 9.62685 11.07897 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.005358 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.316194 B = 5224.175583 C = 6047.092202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.099 3.901 3 Si 0.888 3.112 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.048 3.952 10 C -0.537 4.537 11 S 2.624 3.376 12 O -0.990 6.990 13 O -0.945 6.945 14 N -1.118 6.118 15 C 0.179 3.821 16 H 0.093 0.907 17 C -0.139 4.139 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.110 4.110 21 C -0.115 4.115 22 H 0.106 0.894 23 C 0.515 3.485 24 N -0.861 5.861 25 O -0.517 6.517 26 C -0.208 4.208 27 C -0.142 4.142 28 H 0.262 0.738 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.402 0.598 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.397 0.603 41 H 0.399 0.601 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.121 -11.083 -15.383 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.108 4.108 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.572 4.572 8 H 0.084 0.916 9 C 0.046 3.954 10 C -0.670 4.670 11 S 2.721 3.279 12 O -0.980 6.980 13 O -0.934 6.934 14 N -0.873 5.873 15 C 0.070 3.930 16 H 0.111 0.889 17 C -0.178 4.178 18 C -0.158 4.158 19 C -0.154 4.154 20 C -0.148 4.148 21 C -0.138 4.138 22 H 0.124 0.876 23 C 0.300 3.700 24 N -0.425 5.425 25 O -0.391 6.391 26 C -0.245 4.245 27 C -0.181 4.181 28 H 0.071 0.929 29 H 0.140 0.860 30 H 0.126 0.874 31 H 0.234 0.766 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.225 0.775 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.135 -10.065 -14.589 18.756 hybrid contribution -0.613 -0.179 -0.146 0.655 sum -6.748 -10.245 -14.735 19.174 Atomic orbital electron populations 1.69984 1.06092 1.27033 1.47321 1.24837 0.94639 0.99012 0.92275 0.86630 0.80054 0.83027 0.78752 1.19661 1.21261 1.19631 1.20552 0.93242 0.88837 1.54528 0.91648 1.18289 0.98680 0.93685 0.84736 1.29764 1.15703 1.07315 1.14215 1.04579 0.75236 0.73777 0.74284 1.93455 1.46965 1.71846 1.85778 1.93517 1.85589 1.32602 1.81736 1.56012 1.37974 1.44972 1.48365 1.20350 0.84601 0.91835 0.96173 0.88932 1.22090 1.01296 0.98793 0.95595 1.21508 0.99027 0.97194 0.98046 1.21541 1.00171 0.96774 0.96951 1.21511 1.00543 0.97742 0.94963 1.21696 1.00810 0.96281 0.95039 0.87581 1.20657 0.77599 0.81598 0.90183 1.43915 1.54872 1.28935 1.14809 1.90821 1.51499 1.73051 1.23762 1.23113 0.98759 0.95713 1.06953 1.22471 0.92160 1.00979 1.02522 0.92863 0.85978 0.87443 0.76558 0.89200 0.91314 0.91936 0.91485 0.91762 0.91793 0.91541 0.91144 0.77522 0.76998 0.91357 0.89983 0.89878 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.98 12.92 55.43 0.72 -24.26 16 2 C 0.10 2.83 5.39 -17.82 -0.10 2.73 16 3 Si 0.89 22.62 29.54 -169.99 -5.02 17.60 16 4 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.53 -15.43 6.65 -34.44 -0.23 -15.66 16 8 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 9 C 0.05 1.27 1.65 -155.66 -0.26 1.01 16 10 C -0.54 -12.62 4.62 37.16 0.17 -12.44 16 11 S 2.62 59.41 4.70 -107.50 -0.50 58.90 16 12 O -0.99 -24.71 18.08 -57.54 -1.04 -25.75 16 13 O -0.94 -24.19 15.90 -57.54 -0.91 -25.11 16 14 N -1.12 -18.44 3.43 -4.89 -0.02 -18.45 16 15 C 0.18 2.52 1.89 -67.93 -0.13 2.40 16 16 H 0.09 1.50 7.13 -51.93 -0.37 1.13 16 17 C -0.14 -1.78 5.64 -26.73 -0.15 -1.93 16 18 C -0.12 -1.26 5.76 -26.73 -0.15 -1.42 16 19 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 20 C -0.11 -0.85 4.91 -26.73 -0.13 -0.99 16 21 C -0.12 -1.15 2.35 -91.77 -0.22 -1.36 16 22 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 23 C 0.52 5.98 7.26 -10.98 -0.08 5.90 16 24 N -0.86 -6.29 8.77 31.22 0.27 -6.02 16 25 O -0.52 -8.48 12.99 5.56 0.07 -8.41 16 26 C -0.21 -4.96 9.88 -26.73 -0.26 -5.23 16 27 C -0.14 -3.52 9.46 -26.73 -0.25 -3.78 16 28 H 0.26 7.15 8.32 -40.82 -0.34 6.81 16 29 H 0.12 2.94 7.46 -51.92 -0.39 2.55 16 30 H 0.11 2.37 6.49 -51.92 -0.34 2.04 16 31 H 0.40 5.79 6.78 -34.47 -0.23 5.56 16 32 H 0.09 1.43 7.42 -51.93 -0.39 1.05 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.07 0.78 7.44 -51.93 -0.39 0.40 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.35 7.57 -51.93 -0.39 -0.04 16 39 H 0.07 0.63 6.51 -51.93 -0.34 0.29 16 40 H 0.40 1.59 8.25 -40.82 -0.34 1.26 16 41 H 0.40 2.78 8.93 -40.82 -0.36 2.41 16 42 H 0.07 1.49 8.08 -51.93 -0.42 1.07 16 43 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 44 H 0.08 2.14 8.14 -51.93 -0.42 1.71 16 45 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -36.46 362.37 -9.80 -46.26 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -6.88 Total: 11.59 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: -1.94 Total: -31.81 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.97 Total: -48.74 kcal Atomic # 8 Polarization: -57.39 SS G_CDS: -1.88 Total: -59.27 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Atomic # 16 Polarization: 59.41 SS G_CDS: -0.50 Total: 58.90 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.46 -9.80 -46.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451282829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.396 kcal (2) G-P(sol) polarization free energy of solvation -36.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds