Wall clock time and date at job start Tue Mar 31 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99946 * 2 1 4 4 H 1.48504 * 109.47534 * 270.00512 * 3 2 1 5 5 H 1.48504 * 109.47301 * 30.00278 * 3 2 1 6 6 H 1.48502 * 109.47201 * 150.00370 * 3 2 1 7 7 C 1.37876 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00015 * 174.17996 * 7 2 1 9 9 C 1.50697 * 119.99862 * 354.18450 * 7 2 1 10 10 C 1.52998 * 115.55093 * 84.82256 * 9 7 2 11 11 S 1.81399 * 109.47148 * 39.85643 * 10 9 7 12 12 O 1.42105 * 110.54128 * 67.21092 * 11 10 9 13 13 O 1.42096 * 110.54315 * 290.45957 * 11 10 9 14 14 N 1.65608 * 104.44900 * 178.83246 * 11 10 9 15 15 C 1.46501 * 119.99670 * 65.00095 * 14 11 10 16 16 H 1.08996 * 109.46989 * 334.99635 * 15 14 11 17 17 C 1.52998 * 109.46998 * 94.99906 * 15 14 11 18 18 C 1.53001 * 109.46797 * 60.00000 * 17 15 14 19 19 C 1.52998 * 109.47592 * 60.00120 * 18 17 15 20 20 C 1.52998 * 109.46951 * 299.99786 * 19 18 17 21 21 C 1.52998 * 109.46740 * 215.00032 * 15 14 11 22 22 H 1.09004 * 109.47052 * 180.02562 * 21 15 14 23 23 C 1.50706 * 109.47485 * 59.99989 * 21 15 14 24 24 N 1.34774 * 119.99861 * 179.97438 * 23 21 15 25 25 O 1.21279 * 119.99367 * 359.97438 * 23 21 15 26 26 C 1.52998 * 117.51501 * 230.52579 * 9 7 2 27 27 C 1.52999 * 60.00121 * 107.47881 * 26 9 7 28 28 H 0.97001 * 119.99942 * 5.02702 * 1 2 3 29 29 H 1.08998 * 109.47140 * 279.85154 * 10 9 7 30 30 H 1.09011 * 109.46812 * 159.85528 * 10 9 7 31 31 H 0.96999 * 119.99778 * 245.00107 * 14 11 10 32 32 H 1.08996 * 109.47297 * 299.99691 * 17 15 14 33 33 H 1.09006 * 109.46775 * 179.97438 * 17 15 14 34 34 H 1.09008 * 109.46677 * 179.97438 * 18 17 15 35 35 H 1.08996 * 109.47274 * 299.99305 * 18 17 15 36 36 H 1.08994 * 109.46964 * 59.99286 * 19 18 17 37 37 H 1.08999 * 109.47159 * 179.97438 * 19 18 17 38 38 H 1.08996 * 109.47297 * 180.02562 * 20 19 18 39 39 H 1.09004 * 109.47225 * 300.00248 * 20 19 18 40 40 H 0.97002 * 120.00379 * 0.02562 * 24 23 21 41 41 H 0.96999 * 119.99707 * 179.97438 * 24 23 21 42 42 H 1.09002 * 117.49892 * 214.96668 * 26 9 7 43 43 H 1.08998 * 117.50408 * 359.97438 * 26 9 7 44 44 H 1.08997 * 117.50195 * 252.50648 * 27 26 9 45 45 H 1.09000 * 117.49660 * 107.48824 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0804 -1.1963 -0.0954 9 6 1.2569 -2.4958 0.1311 10 6 0.7013 -3.0724 -1.1726 11 16 1.9100 -2.8320 -2.5037 12 8 3.0690 -3.6212 -2.2733 13 8 2.0158 -1.4550 -2.8383 14 7 1.2035 -3.5222 -3.8330 15 6 -0.0264 -2.9517 -4.3881 16 1 -0.5599 -2.4095 -3.6075 17 6 0.3252 -1.9920 -5.5266 18 6 1.0742 -2.7532 -6.6222 19 6 0.1872 -3.8782 -7.1593 20 6 -0.1644 -4.8379 -6.0208 21 6 -0.9134 -4.0768 -4.9250 22 1 -1.8283 -3.6523 -5.3384 23 6 -1.2597 -5.0221 -3.8036 24 7 -2.0378 -6.0960 -4.0436 25 8 -0.8381 -4.8164 -2.6852 26 6 1.7433 -3.4862 1.1910 27 6 0.4394 -2.7151 1.4057 28 1 -0.4850 0.8368 -0.0736 29 1 -0.2275 -2.5627 -1.4286 30 1 0.5080 -4.1377 -1.0453 31 1 1.6040 -4.3042 -4.2440 32 1 0.9571 -1.1905 -5.1441 33 1 -0.5899 -1.5678 -5.9399 34 1 1.3243 -2.0695 -7.4336 35 1 1.9893 -3.1776 -6.2092 36 1 -0.7278 -3.4537 -7.5722 37 1 0.7207 -4.4202 -7.9401 38 1 -0.7959 -5.6397 -6.4034 39 1 0.7507 -5.2624 -5.6077 40 1 -2.3747 -6.2607 -4.9382 41 1 -2.2604 -6.7047 -3.3219 42 1 1.6674 -4.5486 0.9596 43 1 2.6045 -3.1965 1.7931 44 1 0.4426 -1.9180 2.1491 45 1 -0.4943 -3.2703 1.3154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451282829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:53 Heat of formation + Delta-G solvation = -131.830476 kcal Electronic energy + Delta-G solvation = -28890.691956 eV Core-core repulsion = 25034.014443 eV Total energy + Delta-G solvation = -3856.677513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.25753 -38.78460 -38.49880 -37.74658 -36.58141 -34.93138 -34.08882 -34.01622 -31.72141 -30.18403 -29.76750 -27.45460 -24.67862 -23.48556 -22.98711 -21.64868 -21.43927 -20.62935 -19.74023 -18.79898 -18.32331 -17.96934 -17.50400 -16.91271 -16.69722 -16.53655 -16.02496 -15.91017 -15.58730 -15.39536 -15.06676 -14.89251 -14.60152 -13.84240 -13.70905 -13.65517 -13.54526 -13.48626 -13.09840 -13.00970 -12.86951 -12.75364 -12.71394 -12.39866 -12.26444 -12.15055 -12.07356 -11.86739 -11.71490 -11.52203 -11.36544 -10.98020 -10.84874 -10.73962 -10.49804 -10.46965 -10.21477 -9.82560 -8.18326 -6.35717 -0.26166 1.35362 1.42323 1.46768 1.81153 2.24988 2.42022 2.70803 3.09668 3.13538 3.36778 3.59693 3.65499 3.85545 3.91812 4.12324 4.22566 4.30176 4.37547 4.42509 4.49989 4.51171 4.58104 4.62782 4.68121 4.77079 4.88856 4.94732 4.97232 5.06467 5.19265 5.19719 5.24305 5.31083 5.40556 5.41688 5.50943 5.57979 5.62392 5.71053 6.06524 6.24027 6.28643 6.63047 6.71171 7.40501 7.54950 8.89062 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.005358 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.316194 B = 5224.175583 C = 6047.092202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.060 3.940 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.550 4.550 8 H 0.045 0.955 9 C 0.012 3.988 10 C -0.524 4.524 11 S 2.637 3.363 12 O -1.018 7.018 13 O -0.982 6.982 14 N -1.099 6.099 15 C 0.168 3.832 16 H 0.063 0.937 17 C -0.139 4.139 18 C -0.122 4.122 19 C -0.109 4.109 20 C -0.108 4.108 21 C -0.106 4.106 22 H 0.140 0.860 23 C 0.509 3.491 24 N -0.837 5.837 25 O -0.575 6.575 26 C -0.195 4.195 27 C -0.138 4.138 28 H 0.265 0.735 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.413 0.587 32 H 0.047 0.953 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.056 0.944 40 H 0.417 0.583 41 H 0.404 0.596 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.705 -12.696 -17.651 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.144 4.144 3 Si 0.754 3.246 4 H -0.204 1.204 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.588 4.588 8 H 0.064 0.936 9 C 0.010 3.990 10 C -0.657 4.657 11 S 2.734 3.266 12 O -1.009 7.009 13 O -0.972 6.972 14 N -0.858 5.858 15 C 0.060 3.940 16 H 0.081 0.919 17 C -0.178 4.178 18 C -0.159 4.159 19 C -0.146 4.146 20 C -0.146 4.146 21 C -0.129 4.129 22 H 0.158 0.842 23 C 0.294 3.706 24 N -0.402 5.402 25 O -0.454 6.454 26 C -0.232 4.232 27 C -0.176 4.176 28 H 0.075 0.925 29 H 0.128 0.872 30 H 0.138 0.862 31 H 0.249 0.751 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.248 0.752 41 H 0.235 0.765 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.745 -11.713 -16.884 21.961 hybrid contribution -0.173 0.269 0.500 0.593 sum -7.918 -11.444 -16.384 21.497 Atomic orbital electron populations 1.70029 1.06710 1.27759 1.47661 1.25414 0.95469 1.01385 0.92156 0.85993 0.79602 0.80525 0.78438 1.20391 1.19302 1.19179 1.20652 0.92538 0.90603 1.54958 0.93645 1.18490 1.00104 0.93944 0.86448 1.29592 1.15060 1.07593 1.13405 1.03835 0.74844 0.73023 0.74906 1.93400 1.48756 1.72114 1.86630 1.93468 1.86203 1.35065 1.82434 1.55391 1.38919 1.45185 1.46345 1.20585 0.83877 0.93723 0.95790 0.91865 1.22067 1.02075 0.97719 0.95926 1.21536 0.98708 0.98341 0.97361 1.21519 1.00549 0.95556 0.97011 1.21587 1.00423 0.98468 0.94088 1.21674 1.01367 0.94777 0.95035 0.84236 1.20963 0.77511 0.82418 0.89667 1.43700 1.53022 1.27332 1.16126 1.90793 1.54059 1.74588 1.25920 1.23179 0.98226 0.96541 1.05252 1.22380 0.93146 1.00858 1.01264 0.92541 0.87175 0.86178 0.75070 0.93414 0.88626 0.91059 0.93386 0.89565 0.90058 0.87667 0.92484 0.75171 0.76504 0.89033 0.89850 0.91416 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.93 12.92 21.45 0.28 -51.66 16 2 C 0.06 3.53 5.39 84.65 0.46 3.98 16 3 Si 0.93 47.01 29.54 68.60 2.03 49.04 16 4 H -0.28 -14.30 7.11 99.48 0.71 -13.59 16 5 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.55 -32.75 6.65 25.60 0.17 -32.58 16 8 H 0.05 2.81 7.82 -2.91 -0.02 2.79 16 9 C 0.01 0.65 1.65 -52.93 -0.09 0.56 16 10 C -0.52 -25.28 4.62 71.98 0.33 -24.94 16 11 S 2.64 123.88 4.70 -56.49 -0.27 123.61 16 12 O -1.02 -52.33 18.08 -127.65 -2.31 -54.64 16 13 O -0.98 -52.87 15.90 -127.65 -2.03 -54.90 16 14 N -1.10 -36.83 3.43 -169.40 -0.58 -37.41 16 15 C 0.17 4.70 1.89 44.99 0.08 4.78 16 16 H 0.06 2.14 7.13 -2.39 -0.02 2.12 16 17 C -0.14 -3.50 5.64 30.59 0.17 -3.33 16 18 C -0.12 -2.36 5.76 30.59 0.18 -2.18 16 19 C -0.11 -1.22 5.92 30.59 0.18 -1.04 16 20 C -0.11 -1.25 4.91 30.60 0.15 -1.10 16 21 C -0.11 -1.81 2.35 -11.54 -0.03 -1.84 16 22 H 0.14 1.51 8.14 -2.38 -0.02 1.49 16 23 C 0.51 10.78 7.26 87.66 0.64 11.42 16 24 N -0.84 -9.50 8.77 -173.53 -1.52 -11.02 16 25 O -0.57 -18.62 12.99 -3.03 -0.04 -18.65 16 26 C -0.19 -9.28 9.88 30.59 0.30 -8.98 16 27 C -0.14 -6.87 9.46 30.59 0.29 -6.58 16 28 H 0.27 14.71 8.32 -92.71 -0.77 13.93 16 29 H 0.11 5.53 7.46 -2.39 -0.02 5.51 16 30 H 0.12 5.39 6.49 -2.38 -0.02 5.38 16 31 H 0.41 11.92 6.78 -96.74 -0.66 11.27 16 32 H 0.05 1.60 7.42 -2.39 -0.02 1.58 16 33 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.05 1.10 7.44 -2.39 -0.02 1.08 16 36 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 0.48 7.57 -2.39 -0.02 0.46 16 39 H 0.06 0.85 6.51 -2.38 -0.02 0.83 16 40 H 0.42 1.42 8.25 -92.71 -0.76 0.66 16 41 H 0.40 4.52 8.93 -92.71 -0.83 3.69 16 42 H 0.09 3.89 8.08 -2.39 -0.02 3.87 16 43 H 0.08 3.89 8.14 -2.39 -0.02 3.87 16 44 H 0.07 3.54 8.14 -2.39 -0.02 3.52 16 45 H 0.08 3.61 8.14 -2.39 -0.02 3.59 16 Total: -1.00 -82.66 362.37 -2.82 -85.48 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -1.22 Total: 31.99 kcal Atomic # 6 Polarization: -64.66 SS G_CDS: 2.84 Total: -61.83 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -1.83 Total: -100.09 kcal Atomic # 8 Polarization: -123.82 SS G_CDS: -4.38 Total: -128.20 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Atomic # 16 Polarization: 123.88 SS G_CDS: -0.27 Total: 123.61 kcal Total: -82.66 -2.82 -85.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451282829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.353 kcal (2) G-P(sol) polarization free energy of solvation -82.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds